UHGV-0039861 (vOTU-168645)

Viral Genome: UHGV-0039861

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039861
vOTU ID	vOTU-168645
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_9_CHE0002SZ__NODE_1677_length_38439_cov_4.776758
Associated BioSample	SAMEA4969120
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.45 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.92
Jumbo phage	No

Genome content
Genome length (bp)	38,439
GC content	42.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	93%
Average CDS length (bps)	505.52
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039861_1	phrog_10054	205.2	0	N/A	unknown function
UniRef90	UHGV-0039861_1	UniRef90_UPI0010BE14EF	554.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0039861_1	1158604.I591_00541	153.0	6.21e-38	InterPro IPR018913 Domain of	N/A
Pfam	UHGV-0039861_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0039861_2	phrog_11663	305.7	0	minor head protein	head and packaging
UniRef90	UHGV-0039861_2	UniRef90_C9B751	353.0	0	Predicted protein	N/A
eggNOG-mapper	UHGV-0039861_2	565664.EFXG_01758	153.0	6.3619e-43	N/A	N/A
KOfam	UHGV-0039861_3	K03651	42.6	0.0000000000074	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0039861_3	phrog_7158	471.4	0	N/A	unknown function
UniRef90	UHGV-0039861_3	UniRef90_UPI000A359A0F	942.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0039861_3	1158604.I591_00539	414.0	0	N/A	N/A
Pfam	UHGV-0039861_3	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0039861_3	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-0039861_3	PF10651,PF14582,MF_00905,NF008359,COG1409	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_4	phrog_1067	526.1	0	minor head protein	head and packaging
UniRef90	UHGV-0039861_4	UniRef90_A0A7H4KH69	1788.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0039861_4	1158612.I580_01364	807.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0039861_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0039861_4	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
NCBIFam	UHGV-0039861_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0039861_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0039861_4	PF14594,PF18013,TIGR01665,NF041249,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_5	phrog_5163	103.5	1.4e-30	minor tail protein	tail
UniRef90	UHGV-0039861_5	UniRef90_A0A7H4KH68	427.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0039861_5	565664.EFXG_01177	170.0	0	Phage tail protein	N/A
Pfam	UHGV-0039861_5	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0039861_5	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0039861_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0039861_5	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0039861_6	K08757	40.1	6.8e-18	APOA1; apolipoprotein A-I	N/A
PHROG	UHGV-0039861_6	phrog_1533	533.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0039861_6	UniRef90_A0A7H4KH67	1197.0	0	Phage tail tape measure protein, TP901 family, core region	N/A
eggNOG-mapper	UHGV-0039861_6	35241.Q9AYV8_BPTU2	305.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0039861_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0039861_6	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-0039861_6	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_7	phrog_441	79.6	4.3e-23	tail assembly chaperone	tail
UniRef90	UHGV-0039861_7	UniRef90_A0A0K9N8J7	65.5	0.000000000012	N/A	N/A
eggNOG-mapper	UHGV-0039861_7	568703.LGG_01136	64.3	0.00000000000595	N/A	N/A
PHROG	UHGV-0039861_8	phrog_183	43.7	0.0000000000048	tail chaperone protein	tail
UniRef90	UHGV-0039861_8	UniRef90_A0A7H4KH65	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039861_8	682370.C9W9I6_9CAUD	76.6	1.99e-16	Pfam:Phage_TAC_12	N/A
Pfam	UHGV-0039861_8	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-0039861_8	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_9	phrog_238	176.4	0	major tail protein	tail
UniRef90	UHGV-0039861_9	UniRef90_UPI000A353549	298.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0039861_9	1201292.DR75_348	199.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0039861_9	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0039861_9	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0039861_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_10	phrog_176	85.5	5.4e-25	tail terminator	connector
UniRef90	UHGV-0039861_10	UniRef90_UPI00118564FA	127.0	4.57e-35	N/A	N/A
eggNOG-mapper	UHGV-0039861_10	1423724.BAMM01000023_gene1906	86.7	5.09e-20	N/A	N/A
structural_annotation	UHGV-0039861_10	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_11	phrog_5	62.8	8.1e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0039861_11	UniRef90_UPI000CF31754	201.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0039861_11	883081.HMPREF9698_01611	72.8	0.0000000000000046	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0039861_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0039861_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0039861_11	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_12	phrog_348	66.5	4.4e-19	minor head protein	head and packaging
UniRef90	UHGV-0039861_12	UniRef90_A0A139MCW8	75.1	0.00000000000000149	Putative phage protein	N/A
eggNOG-mapper	UHGV-0039861_12	663241.C9E2J7_9CAUD	75.5	2.17e-16	N/A	N/A
structural_annotation	UHGV-0039861_12	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_13	phrog_132	77.0	2.1e-22	head-tail adaptor	connector
UniRef90	UHGV-0039861_13	UniRef90_A0A097BY55	108.0	1.67e-28	Head-tail connector domain protein	N/A
eggNOG-mapper	UHGV-0039861_13	1486428.A0A097BY55_9CAUD	108.0	2.8e-29	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0039861_13	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0039861_13	PF05135	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039861_14	UniRef90_UPI00032EAA26	176.0	0	fibronectin type III domain-containing protein	N/A
PHROG	UHGV-0039861_15	phrog_544	175.3	0	major head protein	head and packaging
UniRef90	UHGV-0039861_15	UniRef90_UPI00137A7C7D	166.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0039861_15	1214217.ALNF01000014_gene1375	148.0	3.12001e-40	N/A	N/A
structural_annotation	UHGV-0039861_15	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_16	phrog_172	119.2	4.4e-35	head scaffolding protein	head and packaging
UniRef90	UHGV-0039861_16	UniRef90_UPI000B68655F	313.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039861_16	272558.10176153	79.3	0.00000000000000292	N/A	N/A
Pfam	UHGV-0039861_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0039861_16	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_17	phrog_115	253.0	0	minor head protein	head and packaging
UniRef90	UHGV-0039861_17	UniRef90_A0A7H4KH56	564.0	0	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0039861_17	114416.Q8LTR2_9CAUD	208.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0039861_17	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0039861_17	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
structural_annotation	UHGV-0039861_17	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_18	phrog_64	405.7	0	portal protein	head and packaging
UniRef90	UHGV-0039861_18	UniRef90_A0A7H4KH55	853.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0039861_18	1139219.I569_01383	411.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0039861_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0039861_18	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0039861_18	PF05133,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0039861_19	K06909	379.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039861_19	phrog_3717	276.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039861_19	UniRef90_UPI0002A28D93	826.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0039861_19	1034809.SLUG_08620	526.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0039861_19	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0039861_19	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0039861_19	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0039861_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039861_19	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_27	phrog_7446	100.6	7.6e-30	N/A	unknown function
UniRef90	UHGV-0039861_27	UniRef90_Q9MC27	102.0	1.43e-27	ORF56	N/A
PHROG	UHGV-0039861_28	phrog_2538	62.4	7.8e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0039861_28	UniRef90_A0A7Z8ZV05	67.8	0.00000000000493	N/A	N/A
eggNOG-mapper	UHGV-0039861_28	1140002.I570_01447	61.2	0.000000000289	Helix-turn-helix of insertion element transposase	N/A
KOfam	UHGV-0039861_30	K21527	173.8	0	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-0039861_30	phrog_1384	173.6	0	Mom-like DNA modification protein	other
UniRef90	UHGV-0039861_30	UniRef90_K1TCY0	211.0	0	DNA modification protein (Fragment)	N/A
eggNOG-mapper	UHGV-0039861_30	679935.Alfi_0758	207.0	0	N/A	N/A
structural_annotation	UHGV-0039861_30	PF16092,MF_02210,NF007025,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_31	phrog_704	237.1	0	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039861_31	UniRef90_A0A7T4G856	275.0	0	Metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0039861_31	1154757.Q5C_03075	224.0	0	N/A	N/A
Pfam	UHGV-0039861_31	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-0039861_31	PF12850,MF_00905,NF008359,COG2908	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_39	phrog_21958	41.4	0.00000000002	N/A	unknown function
structural_annotation	UHGV-0039861_39	PF07870,NF011893,COG3461	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_40	phrog_1682	74.8	1.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039861_40	UniRef90_A0A7H4KH39	245.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0039861_40	60520.HR47_13580	121.0	8.06e-34	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0039861_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0039861_40	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0039861_42	K03111	110.2	3.1e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0039861_42	phrog_44	117.9	9.7e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039861_42	UniRef90_A0A7H4KH37	285.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039861_42	941770.GL622178_gene368	100.0	5.13e-25	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0039861_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0039861_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0039861_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0039861_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039861_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_47	phrog_1083	147.5	2.8026e-44	N/A	unknown function
UniRef90	UHGV-0039861_47	UniRef90_A0A7H4KH32	201.0	0	Prophage pi3 protein 33	N/A
eggNOG-mapper	UHGV-0039861_47	565664.EFXG_01151	168.0	0	N/A	N/A
Pfam	UHGV-0039861_47	PF06600	N/A	N/A	N/A	DUF1140
structural_annotation	UHGV-0039861_47	PF06600,COG5420	N/A	N/A	N/A	N/A
KOfam	UHGV-0039861_51	K02314	186.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0039861_51	phrog_19	194.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039861_51	UniRef90_A0A7H4KH28	843.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0039861_51	1158604.I591_01788	196.0	0	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-0039861_51	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0039861_51	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0039861_51	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_52	phrog_270	185.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039861_52	UniRef90_UPI00032E2207	499.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039861_52	862514.HMPREF0623_0270	153.0	2.2701e-42	Helix-turn-helix domain	N/A
Pfam	UHGV-0039861_52	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0039861_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0039861_52	PF13730,MF_01909,NF040939,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_53	phrog_398	216.4	0	N/A	unknown function
UniRef90	UHGV-0039861_53	UniRef90_UPI000CF02DAF	367.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0039861_53	945021.TEH_18380	241.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0039861_53	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0039861_53	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0039861_54	phrog_2324	184.3	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039861_54	UniRef90_A0A7H4KH25	384.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0039861_54	985762.SAGN_05945	165.0	0	ERF superfamily	N/A
Pfam	UHGV-0039861_54	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0039861_54	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039861_68	UniRef90_UPI0003305021	108.0	1.01e-29	helix-turn-helix domain-containing protein	N/A
KOfam	UHGV-0039861_69	K22300	65.6	1.1e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0039861_69	phrog_8	69.4	7.5e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039861_69	UniRef90_A0A7H4KH10	152.0	0	Transcriptional repressor DicA	N/A
eggNOG-mapper	UHGV-0039861_69	1314.HKU360_01262	78.2	1.76e-16	Peptidase S24-like	N/A
Pfam	UHGV-0039861_69	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039861_69	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0039861_70	K06400	368.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0039861_70	phrog_95	356.5	0	integrase	integration and excision
UniRef90	UHGV-0039861_70	UniRef90_A0A7H4KH09	840.0	0	Resolvase family site-specific recombinase	N/A
eggNOG-mapper	UHGV-0039861_70	1486428.A0A097BY75_9CAUD	317.0	0	Recombinase	N/A
Pfam	UHGV-0039861_70	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0039861_70	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0039861_70	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
structural_annotation	UHGV-0039861_70	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A