UHGV-0039913 (vOTU-146292)

Viral Genome: UHGV-0039913

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039913
vOTU ID	vOTU-146292
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_23_RAJ1014YZ__NODE_2543_length_29817_cov_4.022999
Associated BioSample	SAMEA4969164
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9784
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.32
Jumbo phage	No

Genome content
Genome length (bp)	29,817
GC content	38.75%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	91%
Average CDS length (bps)	646.21
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039913_1	K00945	302.4	0	cmk; CMP/dCMP kinase [EC:2.7.4.25]	N/A
UniRef90	UHGV-0039913_1	UniRef90_A0A173YKA5	412.0	0	Cytidylate kinase	N/A
eggNOG-mapper	UHGV-0039913_1	411469.EUBHAL_01686	412.0	0	Belongs to the cytidylate kinase family. Type 1 subfamily	N/A
Pfam	UHGV-0039913_1	PF02224	N/A	N/A	Cytidylate kinase	Cytidylate_kin
NCBIFam	UHGV-0039913_1	TIGR00017.1	N/A	N/A	(d)CMP kinase	N/A
COG	UHGV-0039913_1	COG0283	N/A	N/A	Cytidylate kinase	N/A
HAMAP	UHGV-0039913_1	MF_00238	N/A	N/A	Cytidylate kinase [cmk]	N/A
KOfam	UHGV-0039913_2	K07273	104.6	1.2e-30	acm; lysozyme	N/A
PHROG	UHGV-0039913_2	phrog_291	109.2	5.2e-32	endolysin	lysis
UniRef90	UHGV-0039913_2	UniRef90_A0A415G6T2	326.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039913_2	411469.EUBHAL_01497	226.0	0	lysozyme activity	N/A
Pfam	UHGV-0039913_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0039913_2	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0039913_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0039913_2	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_3	phrog_443	60.5	4.2e-17	holin	lysis
UniRef90	UHGV-0039913_3	UniRef90_UPI001BA9F6DF	85.9	1.42e-20	holin	N/A
eggNOG-mapper	UHGV-0039913_3	397288.C806_00114	89.4	7.93e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0039913_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0039913_3	PF16945	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039913_4	UniRef90_A0A173RD60	159.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0039913_4	742765.HMPREF9457_03364	156.0	0	N/A	N/A
structural_annotation	UHGV-0039913_5	PF03412	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_8	phrog_2232	174.0	0	N/A	unknown function
UniRef90	UHGV-0039913_8	UniRef90_A0A3E5GPI2	397.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039913_8	1235802.C823_03705	207.0	0	N/A	N/A
Pfam	UHGV-0039913_8	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-0039913_8	PF14337,TIGR03899	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039913_9	NF040910	N/A	N/A	N/A	N/A
COG	UHGV-0039913_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-0039913_12	phrog_16164	260.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0039913_12	457412.RSAG_01113	78.6	0.0000000000000125	N/A	N/A
structural_annotation	UHGV-0039913_12	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_13	phrog_6616	610.4	0	tail protein	tail
UniRef90	UHGV-0039913_13	UniRef90_A0A1C5RZB4	357.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039913_13	1121866.AUGK01000003_gene1439	247.0	0	Phage minor structural protein	N/A
COG	UHGV-0039913_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0039913_13	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_14	phrog_1194	80.4	1.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0039913_14	33035.JPJF01000093_gene2242	159.0	0	N/A	N/A
structural_annotation	UHGV-0039913_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_15	phrog_1535	392.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0039913_15	UniRef90_A0A1C5RGR7	924.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0039913_15	33035.JPJF01000093_gene2243	891.0	0	phage tail tape measure protein	N/A
COG	UHGV-0039913_15	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0039913_15	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_16	phrog_8355	99.8	1.1e-29	N/A	unknown function
UniRef90	UHGV-0039913_16	UniRef90_UPI001C10E2B7	204.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0039913_16	483218.BACPEC_01147	86.3	6.69e-21	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0039913_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039913_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_17	phrog_8300	88.1	7.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0039913_17	33035.JPJF01000093_gene2245	65.5	0.00000000000142	N/A	N/A
structural_annotation	UHGV-0039913_17	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_18	phrog_820	103.6	1.5e-30	major tail protein	tail
eggNOG-mapper	UHGV-0039913_18	33035.JPJF01000093_gene2246	193.0	0	N/A	N/A
structural_annotation	UHGV-0039913_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_19	phrog_2595	79.9	2.8e-23	head-tail connector protein	connector
UniRef90	UHGV-0039913_19	UniRef90_UPI001C10E28D	245.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0039913_19	483218.BACPEC_01150	125.0	2.22e-35	N/A	N/A
Pfam	UHGV-0039913_19	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0039913_19	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_20	phrog_556	58.1	1.6e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0039913_20	742740.HMPREF9474_03509	159.0	0	N/A	N/A
PHROG	UHGV-0039913_21	phrog_8710	143.5	5.19882e-43	N/A	unknown function
eggNOG-mapper	UHGV-0039913_21	742740.HMPREF9474_03508	146.0	2.94273e-44	N/A	N/A
structural_annotation	UHGV-0039913_21	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_22	phrog_541	95.0	6.2e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0039913_22	742740.HMPREF9474_03507	197.0	0	N/A	N/A
PHROG	UHGV-0039913_23	phrog_15682	64.3	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0039913_23	469618.FVAG_01311	72.4	0.00000000000000181	N/A	N/A
PHROG	UHGV-0039913_24	phrog_212	286.2	0	major head protein	head and packaging
UniRef90	UHGV-0039913_24	UniRef90_UPI001C11B7FF	615.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0039913_24	1151292.QEW_2433	500.0	0	N/A	N/A
structural_annotation	UHGV-0039913_24	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_25	phrog_194	163.0	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0039913_25	UniRef90_UPI001C10C492	358.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0039913_25	1262449.CP6013_3198	158.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0039913_25	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0039913_25	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_27	phrog_478	127.5	5.6e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0039913_27	UniRef90_A0A285PT53	241.0	0	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0039913_27	1235792.C808_00058	194.0	0	N/A	N/A
PHROG	UHGV-0039913_28	phrog_872	79.1	6.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0039913_28	397290.C810_05225	107.0	1.96e-28	N/A	N/A
dbAPIS	UHGV-0039913_28	APIS052	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039913_29	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_30	phrog_581	248.9	0	minor head protein	head and packaging
UniRef90	UHGV-0039913_30	UniRef90_UPI001C0F53DF	860.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0039913_30	33035.JPJF01000093_gene2255	487.0	0	N/A	N/A
Pfam	UHGV-0039913_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039913_30	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
PHROG	UHGV-0039913_31	phrog_25639	138.7	8.09951e-42	N/A	unknown function
eggNOG-mapper	UHGV-0039913_31	742740.HMPREF9474_03502	108.0	7.24e-30	N/A	N/A
PHROG	UHGV-0039913_32	phrog_533	273.8	0	portal protein	head and packaging
UniRef90	UHGV-0039913_32	UniRef90_UPI001C0F908C	1003.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0039913_32	1122918.KB907248_gene4503	520.0	0	N/A	N/A
structural_annotation	UHGV-0039913_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0039913_33	K06909	75.3	1e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039913_33	phrog_2	69.6	6.6e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0039913_33	UniRef90_UPI001C114A0D	967.0	0	terminase	N/A
eggNOG-mapper	UHGV-0039913_33	1304866.K413DRAFT_0811	650.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0039913_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0039913_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039913_33	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0039913_34	K07474	146.2	3.60134e-43	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0039913_34	phrog_51	141.9	3.39955e-42	terminase small subunit	head and packaging
UniRef90	UHGV-0039913_34	UniRef90_A0A417CPY2	264.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0039913_34	742740.HMPREF9474_03499	213.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0039913_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0039913_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0039913_34	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_36	phrog_36	60.5	3.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039913_36	UniRef90_R6ZAS5	147.0	1.76003e-42	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0039913_36	411490.ANACAC_00789	149.0	3.92364e-44	N/A	N/A
structural_annotation	UHGV-0039913_36	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_37	phrog_6568	60.0	2.2e-17	N/A	unknown function
PHROG	UHGV-0039913_38	phrog_1455	68.5	5.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0039913_38	1567013.A0A0A7RTM3_9CAUD	56.6	0.000000000538	N/A	N/A
Pfam	UHGV-0039913_38	PF21793	N/A	N/A	N/A	DUF6877
structural_annotation	UHGV-0039913_38	PF21793	N/A	N/A	N/A	N/A
PHROG	UHGV-0039913_41	phrog_17690	130.0	6.2e-39	N/A	unknown function
UniRef90	UHGV-0039913_41	UniRef90_A0A6L5XWF4	103.0	2.16e-25	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0039913_41	33035.JPJF01000123_gene2433	91.3	2.47e-21	N/A	N/A
PHROG	UHGV-0039913_42	phrog_2562	121.6	8.4e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039913_42	UniRef90_A0A1Y4B2C4	293.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039913_42	411461.DORFOR_00014	178.0	0	N/A	N/A
Pfam	UHGV-0039913_42	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0039913_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0039913_42	PF14297	N/A	N/A	N/A	N/A