UHGV-0039921 (vOTU-063016)

Viral Genome: UHGV-0039921

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0039921
vOTU ID	vOTU-063016
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_23_RAJ1014YZ__NODE_2199_length_33740_cov_5.425007
Associated BioSample	SAMEA4969164
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.65 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9734
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.97
Jumbo phage	No

Genome content
Genome length (bp)	33,740
GC content	28.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	95%
Average CDS length (bps)	532.65
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039921_2	K06400	350.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0039921_2	phrog_95	339.5	0	integrase	integration and excision
UniRef90	UHGV-0039921_2	UniRef90_B0K4R6	393.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0039921_2	1094508.Tsac_0903	384.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0039921_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0039921_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0039921_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0039921_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0039921_2	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_3	phrog_87	41.6	0.000000000016	metallo-protease	other
eggNOG-mapper	UHGV-0039921_3	1507.HMPREF0262_00423	64.3	0.0000000000442	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0039921_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0039921_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0039921_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0039921_4	K22299	60.6	3.8e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0039921_4	phrog_8	73.0	6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039921_4	UniRef90_A0A3D1PLJ6	109.0	1.71e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0039921_4	264732.Moth_1715	72.0	0.0000000000000238	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0039921_4	retron_type_VI_hth_cluster2_1	40.6	0.000000000068	N/A	Retron
Pfam	UHGV-0039921_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039921_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039921_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039921_5	UniRef90_A0A1W7LKW5	67.4	0.000000000000216	Helix-turn-helix family protein	N/A
eggNOG-mapper	UHGV-0039921_5	195103.CPF_1603	52.0	0.0000000323	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0039921_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0039921_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039921_12	UniRef90_A0A858BRQ4	236.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039921_12	33035.JPJF01000135_gene5082	182.0	0	N/A	N/A
Pfam	UHGV-0039921_12	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0039921_12	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_13	phrog_434	54.8	0.0000000000000016	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039921_13	UniRef90_B0PAM4	137.0	9.46e-38	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0039921_13	1462526.BN990_01808	70.1	0.00000000000239	N/A	N/A
structural_annotation	UHGV-0039921_13	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_14	phrog_72	58.6	4e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039921_14	UniRef90_A0A8D9PDS2	101.0	7.6e-24	NinB protein	N/A
eggNOG-mapper	UHGV-0039921_14	445972.ANACOL_01825	91.7	8.78e-21	N/A	N/A
structural_annotation	UHGV-0039921_14	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_16	phrog_7566	46.5	0.00000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0039921_16	1118057.CAGX01000020_gene1648	49.7	0.00000032	N/A	N/A
PHROG	UHGV-0039921_17	phrog_2514	105.1	6.9e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039921_17	UniRef90_A0A345AQ26	72.4	0.000000000000103	Replication initiation protein	N/A
eggNOG-mapper	UHGV-0039921_17	445974.CLORAM_02950	115.0	3.38e-30	N/A	N/A
Pfam	UHGV-0039921_17	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-0039921_17	PF09681,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_18	phrog_1123	55.3	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0039921_18	1308863.U5J9F3_9CAUD	59.7	0.00000000029	N/A	N/A
structural_annotation	UHGV-0039921_18	PF02002,TIGR03433,COG1695	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039921_19	PF15188	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_20	phrog_111	146.7	1.09301e-43	DNA methyltransferase	other
UniRef90	UHGV-0039921_20	UniRef90_A0A1G8EL36	181.0	0	Site-specific DNA-methyltransferase (Adenine-specific)	N/A
eggNOG-mapper	UHGV-0039921_20	1567011.A0A0A7RUD1_9VIRU	175.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0039921_20	oMTase_00015	189.5	0	orphan methyltransferase	RM
Pfam	UHGV-0039921_20	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0039921_20	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039921_22	PF09871,TIGR00739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039921_25	PF06401	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039921_26	536233.CLO_1052	49.3	0.00000826	N/A	N/A
structural_annotation	UHGV-0039921_28	PF14001,MF_01194,TIGR03318,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_30	phrog_36	58.7	1.2e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0039921_30	1121871.AUAT01000030_gene1019	52.0	0.0000022	N/A	N/A
COG	UHGV-0039921_30	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0039921_30	PF07374,NF008895	N/A	N/A	N/A	N/A
KOfam	UHGV-0039921_34	K07474	130.1	2.8e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0039921_34	phrog_51	131.1	6.7e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0039921_34	UniRef90_R7ITW3	262.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0039921_34	1304866.K413DRAFT_0812	160.0	0	Terminase small subunit	N/A
Pfam	UHGV-0039921_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0039921_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0039921_34	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0039921_35	K06909	68.8	9.3e-20	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039921_35	phrog_2	62.3	1.2e-17	terminase large subunit	head and packaging
UniRef90	UHGV-0039921_35	UniRef90_A0A1Q6LGZ0	924.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0039921_35	1232449.BAHV02000018_gene1531	539.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0039921_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039921_35	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_37	phrog_533	228.7	0	portal protein	head and packaging
UniRef90	UHGV-0039921_37	UniRef90_R7FBF4	785.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0039921_37	1294142.CINTURNW_1024	466.0	0	N/A	N/A
structural_annotation	UHGV-0039921_37	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_38	phrog_581	214.5	0	minor head protein	head and packaging
UniRef90	UHGV-0039921_38	UniRef90_UPI001D086335	362.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0039921_38	742740.HMPREF9474_03503	280.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0039921_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039921_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039921_38	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039921_40	UniRef90_UPI001B376D40	73.2	0.0000000000000154	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039921_40	1499689.CCNN01000007_gene1692	65.1	0.0000000000049	TM2 domain	N/A
Pfam	UHGV-0039921_40	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-0039921_40	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_42	phrog_422	282.1	0	major head protein	head and packaging
UniRef90	UHGV-0039921_42	UniRef90_R7FBE8	496.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0039921_42	663278.Ethha_1589	398.0	0	N/A	N/A
structural_annotation	UHGV-0039921_42	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_44	phrog_541	63.7	2.9e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0039921_44	552396.HMPREF0863_01637	60.5	0.000000000452	N/A	N/A
PHROG	UHGV-0039921_45	phrog_8710	104.5	6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0039921_45	1391647.AVSV01000003_gene1811	77.0	9.11e-17	N/A	N/A
structural_annotation	UHGV-0039921_45	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_46	phrog_556	47.2	0.00000000000038	minor head protein	head and packaging
eggNOG-mapper	UHGV-0039921_46	585501.HMPREF6123_0831	95.5	1.02e-23	N/A	N/A
PHROG	UHGV-0039921_47	phrog_2595	62.9	4.5e-18	head-tail connector protein	connector
eggNOG-mapper	UHGV-0039921_47	1151292.QEW_2427	62.8	0.000000000106	N/A	N/A
Pfam	UHGV-0039921_47	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0039921_47	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_48	phrog_820	113.1	1.4e-33	major tail protein	tail
eggNOG-mapper	UHGV-0039921_48	33035.JPJF01000093_gene2246	205.0	0	N/A	N/A
structural_annotation	UHGV-0039921_48	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_49	phrog_8300	55.7	8.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0039921_49	1151292.QEW_2425	60.5	0.000000000162	N/A	N/A
structural_annotation	UHGV-0039921_49	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_50	phrog_8355	105.8	9.7e-32	N/A	unknown function
UniRef90	UHGV-0039921_50	UniRef90_UPI001D0309B6	119.0	1.76e-32	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0039921_50	1415775.U729_2613	107.0	1.96e-28	N/A	N/A
Pfam	UHGV-0039921_50	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039921_50	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039921_51	UniRef90_R7F982	63.9	0.00000000000137	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0039921_51	1540257.JQMW01000013_gene732	55.5	0.000000000513	Mu-like prophage protein Com	N/A
structural_annotation	UHGV-0039921_51	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_52	phrog_1535	476.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0039921_52	UniRef90_A0A174SV65	554.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0039921_52	33035.JPJF01000093_gene2243	577.0	0	phage tail tape measure protein	N/A
COG	UHGV-0039921_52	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0039921_52	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_53	phrog_1194	113.0	1.6e-33	N/A	unknown function
UniRef90	UHGV-0039921_53	UniRef90_R7F8R7	179.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0039921_53	1122918.KB907248_gene4488	112.0	1.3e-30	N/A	N/A
Pfam	UHGV-0039921_53	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0039921_53	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0039921_54	phrog_6616	138.2	1.29998e-41	tail protein	tail
UniRef90	UHGV-0039921_54	UniRef90_R7F857	569.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0039921_54	272562.CA_C0063	96.3	1.82e-17	Prophage endopeptidase tail	N/A
COG	UHGV-0039921_54	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0039921_55	phrog_9116	149.2	1.96182e-44	tail protein	tail
UniRef90	UHGV-0039921_55	UniRef90_A0A3D1PJI0	225.0	0	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0039921_55	694427.Palpr_1970	139.0	4.55e-32	tail collar domain protein	N/A
Pfam	UHGV-0039921_55	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0039921_55	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0039921_59	phrog_2310	54.0	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0039921_59	1415774.U728_3409	52.8	0.0000000191	N/A	N/A