UHGV-0040252 (vOTU-044812)

Viral Genome: UHGV-0040252

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0040252
vOTU ID	vOTU-044812
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_11_CHE0013BZ__NODE_881_length_40723_cov_15.554839
Associated BioSample	SAMEA4969126
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.66
Jumbo phage	No

Genome content
Genome length (bp)	40,646
GC content	50.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	533.17
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0040252_1	1540257.JQMW01000009_gene3382	66.2	0.0000000165	tail tape measure protein	N/A
COG	UHGV-0040252_1	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0040252_2	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040252_3	1232443.BAIA02000078_gene16	61.6	0.0000000697	N/A	N/A
PHROG	UHGV-0040252_5	phrog_5240	92.6	3.6e-27	tail fiber protein	tail
eggNOG-mapper	UHGV-0040252_5	880070.Cycma_0058	100.0	1.62e-19	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-0040252_5	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0040252_5	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0040252_5	PF16255,NF007819,COG2755	N/A	N/A	N/A	N/A
KOfam	UHGV-0040252_6	K08640	106.1	5.4e-31	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0040252_6	phrog_894	56.4	5.1e-16	endolysin	lysis
UniRef90	UHGV-0040252_6	UniRef90_R5EEL2	166.0	0	Putative muramoyl-pentapeptide carboxypeptidase	N/A
eggNOG-mapper	UHGV-0040252_6	931626.Awo_c26840	115.0	1.95e-29	Peptidase M15	N/A
Pfam	UHGV-0040252_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0040252_6	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0040252_6	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_6	PF05951,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_7	phrog_4105	107.2	8.1e-32	N/A	unknown function
UniRef90	UHGV-0040252_7	UniRef90_A0A8D9UHA9	122.0	4.25e-34	Holin protein	N/A
eggNOG-mapper	UHGV-0040252_7	742733.HMPREF9469_05011	135.0	7.82999e-40	N/A	N/A
PHROG	UHGV-0040252_8	phrog_881	90.8	6.9e-27	holin	lysis
UniRef90	UHGV-0040252_8	UniRef90_A0A4Q7P349	94.4	4.35e-24	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0040252_8	742740.HMPREF9474_02251	94.7	5.56e-25	Putative phage holin Dp-1	N/A
Pfam	UHGV-0040252_8	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0040252_8	PF16938	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_9	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_10	phrog_3754	101.1	1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0040252_10	476272.RUMHYD_01764	134.0	5.69e-39	N/A	N/A
UniRef90	UHGV-0040252_11	UniRef90_A0A285PT36	84.0	8.74e-18	Consensus disorder prediction	N/A
PHROG	UHGV-0040252_12	phrog_22984	69.7	3.4e-20	N/A	unknown function
PHROG	UHGV-0040252_13	phrog_16490	128.0	4.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-0040252_13	658655.HMPREF0988_00917	96.3	6.6e-21	N/A	N/A
PHROG	UHGV-0040252_14	phrog_20016	166.6	0	N/A	unknown function
UniRef90	UHGV-0040252_14	UniRef90_A0A2Z4QB67	156.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0040252_14	1226322.HMPREF1545_00077	147.0	1.33123e-43	N/A	N/A
structural_annotation	UHGV-0040252_14	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_15	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0040252_17	K14059	148.7	7.00649e-44	int; integrase	N/A
PHROG	UHGV-0040252_17	phrog_1	144.5	8.80015e-43	integrase	integration and excision
UniRef90	UHGV-0040252_17	UniRef90_A0A3D2HVQ9	358.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0040252_17	1226322.HMPREF1545_03745	82.8	0.00000000000000961	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0040252_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0040252_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0040252_17	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_18	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_21	phrog_8	46.7	0.00000000000071	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040252_21	UniRef90_UPI0018986A55	78.6	1.48e-16	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0040252_21	1507.HMPREF0262_00424	56.6	0.00000000977	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0040252_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0040252_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0040252_21	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_22	MF_00273,NF001981	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_25	PF08962,PF07653,COG2388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_27	PF20432,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0040252_28	K23779	57.3	3.8e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0040252_28	phrog_3	40.1	0.00000000013	transcriptional repressor	transcription regulation
PADLOC	UHGV-0040252_28	retron_type_VI_hth_cluster2_1	52.2	0.000000000000019	N/A	Retron
Pfam	UHGV-0040252_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0040252_28	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_30	phrog_434	303.8	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040252_30	UniRef90_A0A3D3XZF3	278.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0040252_30	1121344.JHZO01000003_gene985	280.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0040252_30	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0040252_30	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0040252_30	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0040252_30	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0040252_31	K07455	299.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0040252_31	phrog_148	276.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040252_31	UniRef90_U2SBP2	372.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0040252_31	1226322.HMPREF1545_00015	372.0	0	RecT family	N/A
Pfam	UHGV-0040252_31	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0040252_31	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0040252_31	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0040252_31	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0040252_32	K03111	135.7	5.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0040252_32	phrog_44	147.7	6.16571e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040252_32	UniRef90_A0A645AIU7	167.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0040252_32	693746.OBV_12860	164.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0040252_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0040252_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0040252_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0040252_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0040252_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_33	phrog_997	122.0	3.4e-36	replication terminator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0040252_33	1298920.KI911353_gene2719	107.0	9.92e-28	N/A	N/A
PHROG	UHGV-0040252_34	phrog_1029	286.3	0	N/A	unknown function
UniRef90	UHGV-0040252_34	UniRef90_A0A3D5WKT6	287.0	0	Peptidase S59 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040252_34	1298920.KI911353_gene2718	260.0	0	N/A	N/A
structural_annotation	UHGV-0040252_34	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0040252_35	K01160	52.5	0.000000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0040252_35	phrog_140	129.7	1.5e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040252_35	UniRef90_A0A7C6XX43	124.0	6.51e-34	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0040252_35	545697.HMPREF0216_02819	115.0	6.47e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0040252_35	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0040252_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0040252_35	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_36	phrog_4973	68.2	1.1e-19	N/A	unknown function
UniRef90	UHGV-0040252_36	UniRef90_A0A3D3Y0P8	98.2	2.06e-25	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0040252_36	1072685.IX83_07155	53.1	0.0000000158	Helix-turn-helix domain	N/A
Pfam	UHGV-0040252_36	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0040252_36	PF14090,MF_01586,TIGR00373,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_37	phrog_15768	132.4	4.3e-40	N/A	unknown function
UniRef90	UHGV-0040252_37	UniRef90_A0A4D7AS84	130.0	4.14e-34	N/A	N/A
eggNOG-mapper	UHGV-0040252_37	642492.Clole_1479	91.7	1.01e-19	DnaD domain protein	N/A
AcrCatalog	UHGV-0040252_37	cluster_38323	108.0	9.64e-31	NA	N/A
Pfam	UHGV-0040252_37	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0040252_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0040252_37	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_38	phrog_9804	154.5	0	N/A	unknown function
UniRef90	UHGV-0040252_38	UniRef90_A0A3D1LDS2	174.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0040252_38	1121344.JHZO01000003_gene981	167.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0040252_38	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0040252_38	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_40	phrog_599	44.8	0.0000000000025	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0040252_40	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0040252_40	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_42	phrog_37916	45.4	0.0000000000011	N/A	unknown function
Pfam	UHGV-0040252_44	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0040252_44	PF04448	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_46	PF02001,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0040252_47	K07319	122.4	3.7e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0040252_47	phrog_498	437.1	0	DNA methyltransferase	other
UniRef90	UHGV-0040252_47	UniRef90_A0A810Q3Z7	442.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0040252_47	1423758.BN55_01455	422.0	0	DNA methylase	N/A
PADLOC	UHGV-0040252_47	MTase_II_00015	239.5	0	Type II methyltransferase	RM
Pfam	UHGV-0040252_47	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0040252_47	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0040252_47	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0040252_47	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_51	phrog_38	168.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0040252_51	UniRef90_UPI00166CA12B	459.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0040252_51	1140001.I571_01829	466.0	0	N/A	N/A
structural_annotation	UHGV-0040252_51	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_52	phrog_64	153.5	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-0040252_52	UniRef90_A0A856HZB4	459.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0040252_52	673376.F2VHW1_9CAUD	207.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0040252_52	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0040252_52	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_53	phrog_115	128.6	4.6e-38	minor head protein	head and packaging
UniRef90	UHGV-0040252_53	UniRef90_A0A4D7AUA1	392.0	0	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0040252_53	1504822.CCNO01000013_gene286	145.0	1.75e-35	cell adhesion	N/A
Pfam	UHGV-0040252_53	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0040252_53	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_53	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_54	phrog_5	70.1	4.5e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0040252_54	UniRef90_UPI0018AA0B5A	171.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0040252_54	1443125.Z962_05620	84.7	2.93e-19	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0040252_54	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0040252_54	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0040252_54	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040252_55	1235798.C817_04600	60.1	0.000000000437	N/A	N/A
structural_annotation	UHGV-0040252_55	NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040252_56	UniRef90_A0A1H4G788	115.0	2.91e-28	XPA protein C-terminus	N/A
eggNOG-mapper	UHGV-0040252_56	1121115.AXVN01000020_gene103	167.0	0	N/A	N/A
structural_annotation	UHGV-0040252_56	PF05181	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_59	phrog_16123	49.8	0.00000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0040252_59	1394176.AWUO01000014_gene641	55.1	0.000000164	N/A	N/A
UniRef90	UHGV-0040252_61	UniRef90_A0A6B9SU02	107.0	1.35e-25	Fibronectin autolysin	N/A
structural_annotation	UHGV-0040252_61	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_62	phrog_544	166.4	0	major head protein	head and packaging
UniRef90	UHGV-0040252_62	UniRef90_A0A6B9SRJ5	390.0	0	Putative head protein	N/A
eggNOG-mapper	UHGV-0040252_62	1347392.CCEZ01000005_gene1236	221.0	0	N/A	N/A
structural_annotation	UHGV-0040252_62	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_64	phrog_17977	80.7	1.3e-23	N/A	unknown function
UniRef90	UHGV-0040252_64	UniRef90_A0A285PT57	142.0	1.04004e-41	Phage head-tail joining protein	N/A
Pfam	UHGV-0040252_64	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0040252_64	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040252_65	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_66	phrog_885	77.8	9.1e-23	major tail protein	tail
UniRef90	UHGV-0040252_66	UniRef90_A0A843J9F0	186.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0040252_66	1504822.CCNO01000012_gene492	216.0	0	N/A	N/A
structural_annotation	UHGV-0040252_66	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0040252_67	phrog_18646	53.9	0.0000000000000037	N/A	unknown function
UniRef90	UHGV-0040252_67	UniRef90_B6CXF0	65.1	0.0000000000436	Peptidase-colicin	N/A
PHROG	UHGV-0040252_69	phrog_6900	114.1	1.3e-33	tail length tape measure protein	tail
UniRef90	UHGV-0040252_69	UniRef90_A0A7X8M4B4	124.0	6.1e-29	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0040252_69	1111121.HMPREF1247_0787	167.0	1.7236e-43	nuclear chromosome segregation	N/A
COG	UHGV-0040252_69	COG5412	N/A	N/A	Phage-related protein	N/A