UHGV-0040747 (vOTU-044846)

Viral Genome: UHGV-0040747

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0040747
vOTU ID	vOTU-044846
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_J_1_RAJ1015YZ__NODE_3612_length_35699_cov_47.608051
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9738
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.74
Jumbo phage	No

Genome content
Genome length (bp)	35,622
GC content	53.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	94%
Average CDS length (bps)	551.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0040747_1	phrog_15768	74.3	2.4e-21	N/A	unknown function
UniRef90	UHGV-0040747_1	UniRef90_A0A8F2RUT8	59.3	0.00000000328	N/A	N/A
eggNOG-mapper	UHGV-0040747_1	1236514.BAKL01000051_gene3707	62.0	0.000000000485	N/A	N/A
Pfam	UHGV-0040747_1	PF19808	N/A	N/A	N/A	DUF6291
PHROG	UHGV-0040747_2	phrog_7566	92.3	3.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0040747_2	1507.HMPREF0262_00433	103.0	1.09e-27	N/A	N/A
PHROG	UHGV-0040747_3	phrog_72	70.5	2.2e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040747_3	UniRef90_A0A8D9PDS2	178.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0040747_3	445972.ANACOL_01825	137.0	9.22e-39	N/A	N/A
structural_annotation	UHGV-0040747_3	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_4	phrog_659	189.8	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040747_4	UniRef90_A0A139MHF1	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040747_4	1507.HMPREF0262_00431	179.0	0	N/A	N/A
Pfam	UHGV-0040747_4	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0040747_4	PF06378,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0040747_10	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0040747_10	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0040747_12	K01356	149.9	2.66247e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0040747_12	phrog_4	120.6	1.6e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0040747_12	UniRef90_A0A413QU80	194.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0040747_12	1111454.HMPREF1250_0095	192.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0040747_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0040747_12	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0040747_12	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0040747_12	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
COG	UHGV-0040747_13	COG4642	N/A	N/A	N/A	N/A
KOfam	UHGV-0040747_14	K14059	234.8	0	int; integrase	N/A
PHROG	UHGV-0040747_14	phrog_1	210.2	0	integrase	integration and excision
UniRef90	UHGV-0040747_14	UniRef90_A0A1V5YD17	211.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0040747_14	428125.CLOLEP_02743	169.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0040747_14	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0040747_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0040747_14	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0040747_14	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040747_16	UniRef90_UPI0008F8C887	82.0	3.68e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0040747_16	1145276.T479_12115	56.6	0.000000000691	Helix-turn-helix domain	N/A
Pfam	UHGV-0040747_16	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0040747_16	PF13560,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_17	phrog_1863	66.7	2e-19	N/A	unknown function
UniRef90	UHGV-0040747_17	UniRef90_A0A2K9NYV1	66.6	0.000000000000752	Holin	N/A
eggNOG-mapper	UHGV-0040747_17	1232453.BAIF02000059_gene1610	50.4	0.000000252	N/A	N/A
NCBIFam	UHGV-0040747_19	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0040747_21	phrog_1493	64.4	2.8e-18	endolysin	lysis
UniRef90	UHGV-0040747_21	UniRef90_A0A239QP18	111.0	4.58e-26	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0040747_21	397287.C807_01339	139.0	1.88e-36	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0040747_21	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0040747_21	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0040747_21	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_22	phrog_17334	42.8	0.0000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0040747_22	645991.Sgly_0358	54.3	0.00000437	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0040747_22	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
eggNOG-mapper	UHGV-0040747_23	411467.BACCAP_03156	68.9	0.000000000425	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-0040747_23	PF18998	N/A	N/A	Divergent InlB B-repeat domain	Flg_new_2
Pfam	UHGV-0040747_23	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-0040747_23	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
COG	UHGV-0040747_23	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040747_23	PF09479	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_24	phrog_29998	40.5	0.000000000035	N/A	unknown function
eggNOG-mapper	UHGV-0040747_24	324057.Pjdr2_1559	58.5	0.00000000628	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0040747_24	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
eggNOG-mapper	UHGV-0040747_25	1094508.Tsac_2414	61.6	0.000000000939	N/A	N/A
structural_annotation	UHGV-0040747_25	PF12571	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040747_26	913865.DOT_5621	121.0	7.09e-27	N/A	N/A
structural_annotation	UHGV-0040747_26	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_27	phrog_13339	353.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0040747_27	UniRef90_A0A412G4M4	245.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0040747_27	411490.ANACAC_00710	258.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0040747_27	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0040747_27	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0040747_27	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0040747_27	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_28	phrog_706	126.8	5.9e-38	N/A	unknown function
UniRef90	UHGV-0040747_28	UniRef90_UPI001E629CF3	121.0	3.28e-31	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0040747_28	120574.Q94M37_9CAUD	78.2	0.00000000000000255	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0040747_28	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0040747_28	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040747_29	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_30	phrog_820	128.4	3.6e-38	major tail protein	tail
UniRef90	UHGV-0040747_30	UniRef90_A0A3A6EPU8	145.0	7.66006e-41	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0040747_30	428125.CLOLEP_00178	216.0	0	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-0040747_30	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040747_31	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_32	phrog_556	64.2	1.9e-18	minor head protein	head and packaging
eggNOG-mapper	UHGV-0040747_32	428125.CLOLEP_00180	63.2	0.0000000000327	Minor capsid protein	N/A
Pfam	UHGV-0040747_32	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0040747_32	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_33	phrog_793	40.8	0.000000000034	head-tail adaptor	connector
Pfam	UHGV-0040747_33	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-0040747_33	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_34	phrog_541	103.6	1.4e-30	head-tail adaptor	connector
UniRef90	UHGV-0040747_34	UniRef90_F5L4I5	59.3	0.0000000179	Protein gp8	N/A
eggNOG-mapper	UHGV-0040747_34	986075.CathTA2_0698	59.3	0.000000003	N/A	N/A
PHROG	UHGV-0040747_35	phrog_422	326.9	0	major head protein	head and packaging
UniRef90	UHGV-0040747_35	UniRef90_A0A316T938	390.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0040747_35	428125.CLOLEP_00183	413.0	0	COG NOG28280 non supervised orthologous group	N/A
structural_annotation	UHGV-0040747_35	PF19821,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
COG	UHGV-0040747_37	COG0783	N/A	N/A	DNA-binding ferritin-like protein (oxidative damage protectant)	N/A
structural_annotation	UHGV-0040747_37	PF14530,MF_01441,NF009990,COG0783	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_40	phrog_581	200.3	0	minor head protein	head and packaging
UniRef90	UHGV-0040747_40	UniRef90_A0A1C6FMR4	238.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0040747_40	428125.CLOLEP_01802	221.0	0	N/A	N/A
Pfam	UHGV-0040747_40	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0040747_40	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040747_40	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_41	phrog_533	388.8	0	portal protein	head and packaging
UniRef90	UHGV-0040747_41	UniRef90_UPI001898C571	601.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0040747_41	428125.CLOLEP_01803	579.0	0	N/A	N/A
Pfam	UHGV-0040747_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0040747_41	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0040747_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0040747_42	K06909	96.2	3.9e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0040747_42	phrog_2	87.5	2.4e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0040747_42	UniRef90_UPI001D102108	448.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0040747_42	1032362.F6K8Q6_9CAUD	448.0	0	DNA packaging	N/A
Pfam	UHGV-0040747_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
structural_annotation	UHGV-0040747_42	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_44	phrog_21498	266.0	0	N/A	unknown function
UniRef90	UHGV-0040747_44	UniRef90_F0NXT0	212.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0040747_44	865938.Weevi_0265	212.0	0	DNA binding	N/A
COG	UHGV-0040747_44	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0040747_44	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_45	phrog_36	57.7	2.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040747_45	UniRef90_UPI00137B3314	75.1	0.000000000000022	N/A	N/A
eggNOG-mapper	UHGV-0040747_45	994573.T472_0214010	68.9	0.000000000000877	sigma factor activity	N/A
Pfam	UHGV-0040747_45	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0040747_45	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-0040747_47	phrog_6721	298.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0040747_47	665956.HMPREF1032_00655	297.0	0	N/A	N/A
structural_annotation	UHGV-0040747_47	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_48	phrog_30930	141.1	4.1002e-42	N/A	unknown function
UniRef90	UHGV-0040747_48	UniRef90_D2BQD3	105.0	3.74e-27	N/A	N/A
eggNOG-mapper	UHGV-0040747_48	1214184.ALKY01000039_gene933	122.0	1.5e-34	N/A	N/A
KOfam	UHGV-0040747_51	K00558	47.7	0.00000000000012	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0040747_51	phrog_757	122.5	2.8e-36	DNA methyltransferase	other
UniRef90	UHGV-0040747_51	UniRef90_UPI000CF1F213	342.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0040747_51	622312.ROSEINA2194_01264	324.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0040747_51	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0040747_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0040747_51	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_56	phrog_801	92.8	4.7e-27	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0040747_56	UniRef90_A0A7G6E7Z0	133.0	5.98e-38	N/A	N/A
eggNOG-mapper	UHGV-0040747_56	1100790.H2ELW3_9CAUD	65.5	0.00000000000946	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0040747_56	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
PHROG	UHGV-0040747_59	phrog_244	86.1	5.3e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0040747_59	33035.JPJF01000122_gene2460	119.0	3.47e-33	N/A	N/A
structural_annotation	UHGV-0040747_59	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0040747_60	K03111	111.4	1.4e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0040747_60	phrog_44	129.8	2.1e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040747_60	UniRef90_A0A358AUU6	109.0	7.99e-28	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0040747_60	1385512.N784_08510	102.0	5.21e-26	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0040747_60	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0040747_60	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0040747_60	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0040747_60	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0040747_60	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0040747_61	phrog_9804	59.4	5.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0040747_61	1291050.JAGE01000002_gene3261	64.7	0.0000000000832	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0040747_61	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P