UHGV-0040783 (vOTU-065232)

Viral Genome: UHGV-0040783

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0040783
vOTU ID	vOTU-065232
Representative Genome?	Yes
Source	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_7_RAU0027AZ__NODE_2966_length_34292_cov_5.608359
Associated BioSample	SAMEA11460267
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.01 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.83
Jumbo phage	No

Genome content
Genome length (bp)	34,292
GC content	39.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	91%
Average CDS length (bps)	581.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0040783_1	K14059	212.5	0	int; integrase	N/A
PHROG	UHGV-0040783_1	phrog_1	209.9	0	integrase	integration and excision
UniRef90	UHGV-0040783_1	UniRef90_UPI001899FB9B	736.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0040783_1	1507.HMPREF0262_00307	193.0	0	Phage integrase family	N/A
Pfam	UHGV-0040783_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0040783_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0040783_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040783_2	UniRef90_A0A348ZC97	346.0	0	UDP-N-acetylglucosamine kinase	N/A
eggNOG-mapper	UHGV-0040783_2	246199.CUS_4649	199.0	0	zeta toxin	N/A
Pfam	UHGV-0040783_2	PF06414	N/A	N/A	Zeta toxin	Zeta_toxin
COG	UHGV-0040783_2	COG4185	N/A	N/A	Predicted ABC-type ATPase or kinase	N/A
structural_annotation	UHGV-0040783_2	PF06414,MF_00234,NF041574,COG4185	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_3	K07728	45.3	0.00000000000035	K07728; putative transcriptional regulator	N/A
PHROG	UHGV-0040783_3	phrog_2439	341.2	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040783_3	UniRef90_UPI00164BBB9D	382.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0040783_3	536233.CLO_1870	273.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0040783_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0040783_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0040783_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0040783_3	PF06114,PF01381,MF_00584,NF038139,COG2856,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_5	phrog_16442	135.8	2.9e-40	N/A	unknown function
UniRef90	UHGV-0040783_5	UniRef90_A0A373KW38	304.0	0	Nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0040783_5	397291.C804_06293	192.0	0	Predicted nucleotide-binding protein containing TIR-like domain	N/A
PADLOC	UHGV-0040783_5	Effector_00069	46.5	0.00000000000045	TIR	CBASS
Pfam	UHGV-0040783_5	PF10137	N/A	N/A	CAP12/Pycsar effector protein, TIR domain	CAP12-PCTIR_TIR
COG	UHGV-0040783_5	COG4271	N/A	N/A	Predicted nucleotide-binding protein containing TIR -like domain	N/A
structural_annotation	UHGV-0040783_5	PF10137,COG4271	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_6	K18830	58.5	1.7e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0040783_6	phrog_8	44.1	0.0000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040783_6	UniRef90_A0A1G5CKS8	197.0	0	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0040783_6	1151292.QEW_0314	99.8	7.48e-25	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0040783_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0040783_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0040783_6	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_19	phrog_674	162.2	0	N/A	unknown function
UniRef90	UHGV-0040783_19	UniRef90_A0A374N9T8	372.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040783_19	1408437.JNJN01000039_gene373	186.0	0	N/A	N/A
Pfam	UHGV-0040783_19	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0040783_19	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_20	K07455	181.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0040783_20	phrog_148	203.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040783_20	UniRef90_A0A374N9W0	422.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0040783_20	1095750.HMPREF9970_1675	280.0	0	RecT family	N/A
Pfam	UHGV-0040783_20	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0040783_20	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0040783_20	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0040783_20	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_21	K06167	47.4	0.00000000000025	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0040783_21	phrog_392	103.2	3.3e-30	metal-dependent hydrolase	other
UniRef90	UHGV-0040783_21	UniRef90_A0A373XYI8	246.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0040783_21	665956.HMPREF1032_03101	177.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0040783_21	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0040783_21	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0040783_21	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_22	phrog_2562	137.5	9.70007e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040783_22	UniRef90_A0A374US31	462.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040783_22	1232449.BAHV02000016_gene1836	169.0	0	N/A	N/A
Pfam	UHGV-0040783_22	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0040783_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0040783_22	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_23	K02315	131.9	5.6e-39	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0040783_23	phrog_50	129.1	3.7e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040783_23	UniRef90_A0A374UPV4	499.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0040783_23	445972.ANACOL_01829	204.0	0	N/A	N/A
Pfam	UHGV-0040783_23	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0040783_23	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0040783_23	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_24	K01160	52.3	0.000000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0040783_24	phrog_140	99.5	3.3e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040783_24	UniRef90_A0A374US90	221.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0040783_24	411462.DORLON_00806	188.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0040783_24	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0040783_24	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0040783_24	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040783_25	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_28	K18830	57.2	4.4e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0040783_28	phrog_8	65.3	1.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040783_28	UniRef90_A0A374N9T4	109.0	3.61e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0040783_28	717605.Theco_0106	78.6	9.12e-18	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0040783_28	retron_type_VI_hth_cluster2_1	44.6	0.0000000000042	N/A	Retron
Pfam	UHGV-0040783_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0040783_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0040783_28	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040783_30	PF14282,COG5570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040783_31	1540257.JQMW01000004_gene433	50.8	0.0000026	N/A	N/A
structural_annotation	UHGV-0040783_31	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_32	phrog_8680	259.4	0	N/A	unknown function
UniRef90	UHGV-0040783_32	UniRef90_A0A373KTP5	417.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040783_32	411470.RUMGNA_02208	264.0	0	N/A	N/A
Pfam	UHGV-0040783_32	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0040783_32	PF14386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040783_33	557436.Lreu_0830	93.6	1.57e-22	N/A	N/A
PHROG	UHGV-0040783_34	phrog_9479	168.3	0	N/A	unknown function
structural_annotation	UHGV-0040783_34	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_35	phrog_309	144.9	1.59748e-43	terminase small subunit	head and packaging
UniRef90	UHGV-0040783_35	UniRef90_UPI001B3C9B19	222.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0040783_35	411470.RUMGNA_02210	148.0	6.86636e-44	transposase activity	N/A
Pfam	UHGV-0040783_35	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0040783_35	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0040783_35	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0040783_36	K06909	79.5	4.3e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0040783_36	phrog_2	86.3	5.2e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0040783_36	UniRef90_UPI00189AB5B3	852.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0040783_36	1304866.K413DRAFT_3034	608.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0040783_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0040783_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0040783_36	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_37	phrog_533	321.1	0	portal protein	head and packaging
UniRef90	UHGV-0040783_37	UniRef90_UPI00189C53D6	818.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0040783_37	1304866.K413DRAFT_3035	475.0	0	N/A	N/A
structural_annotation	UHGV-0040783_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_38	phrog_581	304.9	0	minor head protein	head and packaging
UniRef90	UHGV-0040783_38	UniRef90_UPI001897AC3D	985.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0040783_38	1449050.JNLE01000003_gene3892	347.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0040783_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0040783_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040783_38	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_39	phrog_419	86.8	2.6e-27	N/A	unknown function
UniRef90	UHGV-0040783_39	UniRef90_UPI001E40EA70	108.0	5.79e-30	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0040783_39	203119.Cthe_2457	101.0	8.13e-28	N/A	N/A
structural_annotation	UHGV-0040783_39	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_41	phrog_194	101.5	9.5e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0040783_41	UniRef90_UPI0018995066	345.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0040783_41	742765.HMPREF9457_02126	166.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0040783_41	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0040783_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_42	phrog_422	236.0	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0040783_42	693746.OBV_18090	386.0	0	N/A	N/A
structural_annotation	UHGV-0040783_42	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_43	phrog_541	80.8	1.4e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0040783_43	1449050.JNLE01000003_gene3888	76.6	2.19e-16	N/A	N/A
PHROG	UHGV-0040783_44	phrog_3366	66.5	3.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0040783_44	1449050.JNLE01000003_gene3887	79.3	3.52e-17	N/A	N/A
Pfam	UHGV-0040783_44	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0040783_44	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_45	phrog_556	119.7	7.1e-36	minor head protein	head and packaging
UniRef90	UHGV-0040783_45	UniRef90_UPI00189BC4F9	345.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0040783_45	1449050.JNLE01000003_gene3886	151.0	1.26117e-44	N/A	N/A
Pfam	UHGV-0040783_45	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0040783_45	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_46	phrog_3266	97.9	7.7e-29	tail completion	connector
eggNOG-mapper	UHGV-0040783_46	1449050.JNLE01000003_gene3885	142.0	1.85994e-41	N/A	N/A
structural_annotation	UHGV-0040783_46	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_47	phrog_3099	143.1	1.3004e-42	N/A	unknown function
eggNOG-mapper	UHGV-0040783_47	1160721.RBI_II00532	207.0	0	N/A	N/A
structural_annotation	UHGV-0040783_47	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_48	phrog_11299	116.6	1.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0040783_48	1449050.JNLE01000003_gene3883	67.4	0.00000000000299	N/A	N/A
structural_annotation	UHGV-0040783_48	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_49	phrog_706	139.4	2.09999e-41	N/A	unknown function
UniRef90	UHGV-0040783_49	UniRef90_A0A2N0ULW2	252.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0040783_49	1160721.RBI_II00530	198.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0040783_49	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0040783_49	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_50	phrog_5319	70.9	9.7e-21	outer membrane protein	other
UniRef90	UHGV-0040783_50	UniRef90_A0A1Q6JN93	200.0	0	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040783_50	1042156.CXIVA_15870	110.0	2.6e-25	sh3 domain protein	N/A
Pfam	UHGV-0040783_50	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-0040783_50	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040783_50	PF03843,PF12773,MF_00984,TIGR00752,COG3065	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_51	phrog_1535	310.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0040783_51	33035.JPJF01000093_gene2243	321.0	0	phage tail tape measure protein	N/A
COG	UHGV-0040783_51	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0040783_51	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_52	phrog_1194	59.9	3.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0040783_52	397290.C810_05238	97.1	6.37e-24	N/A	N/A
Pfam	UHGV-0040783_52	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0040783_52	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0040783_53	phrog_18190	68.3	2.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0040783_53	483218.BACPEC_01143	70.1	0.000000000529	N/A	N/A
structural_annotation	UHGV-0040783_53	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A