UHGV-0041553 (vOTU-169497)

Viral Genome: UHGV-0041553

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0041553
vOTU ID	vOTU-169497
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_2686
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.79 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.85
Jumbo phage	No

Genome content
Genome length (bp)	23,522
GC content	42.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	33
CDS density	92%
Average CDS length (bps)	653.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0041553_1	phrog_14030	159.2	0	N/A	unknown function
UniRef90	UHGV-0041553_1	UniRef90_G5FC83	221.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0041553_1	411461.DORFOR_00720	537.0	0	N/A	N/A
structural_annotation	UHGV-0041553_1	PF18342,NF041850,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_2	phrog_1129	76.5	2.5e-22	holin	lysis
UniRef90	UHGV-0041553_2	UniRef90_UPI001F15FE24	150.0	1.4013e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0041553_2	411461.DORFOR_00721	178.0	0	N/A	N/A
Pfam	UHGV-0041553_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0041553_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_3	phrog_1009	40.1	0.000000000059	N/A	unknown function
UniRef90	UHGV-0041553_3	UniRef90_A0A173RD60	173.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0041553_3	742765.HMPREF9457_03364	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-0041553_4	411461.DORFOR_00723	91.3	4.31e-24	N/A	N/A
eggNOG-mapper	UHGV-0041553_5	411461.DORFOR_00724	189.0	0	N/A	N/A
structural_annotation	UHGV-0041553_5	PF07703,NF038114,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_6	phrog_32322	79.4	3.5e-23	N/A	unknown function
UniRef90	UHGV-0041553_6	UniRef90_B0G3A4	227.0	0	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-0041553_6	411461.DORFOR_00725	227.0	0	N/A	N/A
Pfam	UHGV-0041553_6	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-0041553_6	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-0041553_7	K13276	80.2	1.5e-23	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0041553_7	phrog_11157	241.3	0	N/A	unknown function
UniRef90	UHGV-0041553_7	UniRef90_B0G3A5	555.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0041553_7	411461.DORFOR_00726	555.0	0	N/A	N/A
Pfam	UHGV-0041553_7	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0041553_7	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
NCBIFam	UHGV-0041553_7	NF033510.3	N/A	N/A	Ca2+-stabilized repeat-containing adhesin	N/A
COG	UHGV-0041553_7	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0041553_7	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_8	phrog_1382	73.1	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0041553_8	411461.DORFOR_00727	88.2	7.67e-23	N/A	N/A
PHROG	UHGV-0041553_9	phrog_12931	102.8	2.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0041553_9	411461.DORFOR_00728	234.0	0	N/A	N/A
KOfam	UHGV-0041553_10	K03733	206.0	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0041553_10	phrog_1	155.7	0	integrase	integration and excision
UniRef90	UHGV-0041553_10	UniRef90_A0A1C5SV17	614.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0041553_10	411461.DORFOR_00731	644.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0041553_10	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0041553_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0041553_10	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0041553_10	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_11	phrog_25635	216.6	0	N/A	unknown function
UniRef90	UHGV-0041553_11	UniRef90_A0A6L8RVX5	250.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0041553_11	411461.DORFOR_00732	539.0	0	N/A	N/A
structural_annotation	UHGV-0041553_11	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_12	phrog_538	206.4	0	minor tail protein	tail
UniRef90	UHGV-0041553_12	UniRef90_UPI001F3E20C1	284.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0041553_12	411461.DORFOR_00733	670.0	0	N/A	N/A
Pfam	UHGV-0041553_12	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0041553_12	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0041553_13	411461.DORFOR_00734	543.0	0	N/A	N/A
structural_annotation	UHGV-0041553_13	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_14	phrog_58	276.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0041553_14	UniRef90_A0A173TTL9	790.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0041553_14	411461.DORFOR_00735	1286.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0041553_14	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041553_14	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_15	phrog_706	166.9	0	N/A	unknown function
UniRef90	UHGV-0041553_15	UniRef90_B0G3B6	379.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0041553_15	411461.DORFOR_00737	379.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0041553_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0041553_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_16	phrog_4450	110.9	8.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0041553_16	411461.DORFOR_00738	278.0	0	N/A	N/A
Pfam	UHGV-0041553_16	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0041553_16	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_17	phrog_3099	166.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0041553_17	411461.DORFOR_00739	336.0	0	N/A	N/A
structural_annotation	UHGV-0041553_17	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_18	phrog_3266	148.0	2.94273e-44	tail completion	connector
eggNOG-mapper	UHGV-0041553_18	411461.DORFOR_00740	288.0	0	N/A	N/A
structural_annotation	UHGV-0041553_18	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_19	phrog_556	150.5	2.8026e-45	minor head protein	head and packaging
UniRef90	UHGV-0041553_19	UniRef90_UPI00093128B4	188.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0041553_19	411461.DORFOR_00741	252.0	0	N/A	N/A
Pfam	UHGV-0041553_19	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0041553_19	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_20	phrog_3366	134.2	6.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-0041553_20	411461.DORFOR_00742	290.0	0	N/A	N/A
Pfam	UHGV-0041553_20	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0041553_20	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_21	phrog_541	98.0	7.3e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0041553_21	411461.DORFOR_00743	278.0	0	N/A	N/A
PHROG	UHGV-0041553_22	phrog_10	169.8	0	major head protein	head and packaging
UniRef90	UHGV-0041553_22	UniRef90_A6BER6	600.0	0	Putative phage capsid family	N/A
eggNOG-mapper	UHGV-0041553_22	411461.DORFOR_00744	650.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0041553_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0041553_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0041553_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0041553_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_23	phrog_2303	148.2	5.46506e-44	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0041553_23	411461.DORFOR_00745	330.0	0	N/A	N/A
AcrCatalog	UHGV-0041553_23	cluster_74817	80.1	6.61e-21	NA	N/A
structural_annotation	UHGV-0041553_23	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0041553_24	K07584	57.7	2.7e-16	N/A	N/A
PHROG	UHGV-0041553_24	phrog_4478	88.4	5.6e-26	peptidase	other
UniRef90	UHGV-0041553_24	UniRef90_A0A3E5EK56	181.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0041553_24	411461.DORFOR_00746	194.0	0	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0041553_24	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0041553_24	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041553_24	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0041553_25	411461.DORFOR_00747	175.0	0	N/A	N/A
PHROG	UHGV-0041553_26	phrog_581	335.7	0	minor head protein	head and packaging
UniRef90	UHGV-0041553_26	UniRef90_A0A3E5EL65	969.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0041553_26	411461.DORFOR_00748	1100.0	0	N/A	N/A
Pfam	UHGV-0041553_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0041553_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041553_26	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_27	phrog_533	434.6	0	portal protein	head and packaging
UniRef90	UHGV-0041553_27	UniRef90_B0G3C8	929.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0041553_27	411461.DORFOR_00749	929.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0041553_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0041553_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0041553_28	K06909	219.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0041553_28	phrog_2	120.2	2.7e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0041553_28	UniRef90_B0G3C9	925.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0041553_28	411461.DORFOR_00750	925.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0041553_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0041553_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0041553_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0041553_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0041553_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_29	phrog_509	272.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0041553_29	UniRef90_A0A391P905	389.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0041553_29	411461.DORFOR_00751	492.0	0	DNA packaging	N/A
Pfam	UHGV-0041553_29	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0041553_29	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0041553_29	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041553_29	NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0041553_30	phrog_8187	46.8	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0041553_30	411461.DORFOR_00752	356.0	0	N/A	N/A
PADLOC	UHGV-0041553_30	AbiN	45.4	0.0000000000022	AbiN	Abi
PHROG	UHGV-0041553_31	phrog_36	80.6	2e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0041553_31	UniRef90_A0A3R5X3C8	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-0041553_31	411461.DORFOR_00754	294.0	0	sigma factor activity	N/A
COG	UHGV-0041553_31	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0041553_31	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A