UHGV-0042732 (vOTU-101592)

Viral Genome: UHGV-0042732

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0042732
vOTU ID	vOTU-101592
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_2554
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.71 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.38
Jumbo phage	No

Genome content
Genome length (bp)	20,001
GC content	41.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	29
CDS density	95%
Average CDS length (bps)	654.10
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0042732_1	UniRef90_UPI00156FC490	110.0	2.87e-23	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0042732_1	411462.DORLON_00771	117.0	5.04e-26	N/A	N/A
structural_annotation	UHGV-0042732_1	PF10651,COG3470	N/A	N/A	N/A	N/A
COG	UHGV-0042732_2	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0042732_3	phrog_14030	157.5	0	N/A	unknown function
UniRef90	UHGV-0042732_3	UniRef90_UPI0018999D57	663.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0042732_3	33035.JPJF01000093_gene2240	349.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0042732_3	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0042732_3	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0042732_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0042732_3	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_4	phrog_13289	426.9	0	tail protein	tail
UniRef90	UHGV-0042732_4	UniRef90_UPI001570BE36	1259.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0042732_4	1235798.C817_02568	473.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0042732_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0042732_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0042732_4	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0042732_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_5	phrog_33	64.2	3.5e-18	distal tail protein Dit	tail
UniRef90	UHGV-0042732_5	UniRef90_UPI001570C170	472.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0042732_5	1235798.C817_02569	209.0	0	tail component	N/A
NCBIFam	UHGV-0042732_5	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0042732_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0042732_5	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0042732_6	K10421	52.3	0.0000000000000045	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0042732_6	phrog_23464	194.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0042732_6	1232452.BAIB02000007_gene1616	423.0	0	phage tail tape measure protein	N/A
COG	UHGV-0042732_6	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0042732_8	phrog_88	92.0	7.1e-27	major tail protein	tail
UniRef90	UHGV-0042732_8	UniRef90_D4M596	382.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0042732_8	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0042732_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0042732_8	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_9	phrog_5	49.8	0.000000000000089	tail completion or Neck1 protein	connector
UniRef90	UHGV-0042732_9	UniRef90_D4M595	234.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0042732_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0042732_9	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0042732_10	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0042732_11	UniRef90_UPI00189B1559	231.0	0	phage head closure protein	N/A
structural_annotation	UHGV-0042732_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_13	phrog_10	75.4	3.8e-22	major head protein	head and packaging
UniRef90	UHGV-0042732_13	UniRef90_UPI00156F222D	717.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0042732_13	1232452.BAIB02000007_gene1625	465.0	0	Phage capsid family	N/A
Pfam	UHGV-0042732_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0042732_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0042732_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0042732_13	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0042732_14	K01358	109.4	4.5e-32	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0042732_14	phrog_94	179.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0042732_14	UniRef90_D4M590	468.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0042732_14	1235792.C808_00085	206.0	0	Clp protease	N/A
Pfam	UHGV-0042732_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0042732_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0042732_14	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0042732_15	1232452.BAIB02000007_gene1627	166.0	0	Phage portal protein, HK97 family	N/A
COG	UHGV-0042732_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
UniRef90	UHGV-0042732_16	UniRef90_UPI00156D5DC9	421.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0042732_16	1232452.BAIB02000007_gene1627	128.0	1.25e-32	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0042732_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0042732_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-0042732_17	phrog_9	258.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0042732_17	UniRef90_D4M588	1097.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0042732_17	1232452.BAIB02000007_gene1629	530.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0042732_17	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0042732_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0042732_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0042732_17	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_18	phrog_5110	78.0	9.4e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0042732_18	UniRef90_A0A1C5LZF0	85.5	1.52e-19	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0042732_18	349161.Dred_2608	63.9	0.00000000000389	N/A	N/A
structural_annotation	UHGV-0042732_18	PF05119,TIGR01558	N/A	N/A	N/A	N/A
KOfam	UHGV-0042732_19	K07451	51.0	0.00000000000003	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0042732_19	phrog_119	83.0	3.9e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0042732_19	UniRef90_UPI00156F1D4A	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0042732_19	1232452.BAIB02000007_gene1631	99.4	1.33e-25	HNH nucleases	N/A
Pfam	UHGV-0042732_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0042732_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0042732_20	phrog_497	58.0	2e-16	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0042732_20	UniRef90_A0A414EIB6	217.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0042732_20	1280694.AUJQ01000004_gene534	155.0	0	N/A	N/A
Pfam	UHGV-0042732_20	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0042732_20	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0042732_20	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0042732_21	K07339	64.9	1.1e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0042732_21	phrog_353	51.4	0.000000000000015	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0042732_21	UniRef90_A0A414J4J8	108.0	4.84e-30	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0042732_21	1042156.CXIVA_01550	88.6	6.88e-23	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0042732_21	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-0042732_21	PF07927	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_22	phrog_36	86.8	2.9e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-0042732_22	UniRef90_A0A3R5X3C8	246.0	0	N/A	N/A
eggNOG-mapper	UHGV-0042732_22	1235792.C808_03069	196.0	0	sigma factor activity	N/A
COG	UHGV-0042732_22	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0042732_22	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_23	phrog_15198	44.8	0.0000000000016	N/A	unknown function
PHROG	UHGV-0042732_24	phrog_8684	107.1	1.3e-31	N/A	unknown function
UniRef90	UHGV-0042732_24	UniRef90_A0A1C5X6R0	342.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-0042732_24	457412.RSAG_01162	180.0	0	YopX protein	N/A
Pfam	UHGV-0042732_24	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0042732_24	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_26	phrog_20593	50.6	0.000000000000025	N/A	unknown function
structural_annotation	UHGV-0042732_26	PF07870,TIGR02501	N/A	N/A	N/A	N/A
PHROG	UHGV-0042732_27	phrog_10714	45.0	0.0000000000015	N/A	unknown function
PHROG	UHGV-0042732_28	phrog_599	40.3	0.000000000059	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0042732_28	UniRef90_UPI00189A61B2	211.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0042732_28	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0042732_29	phrog_924	46.1	0.0000000000011	N/A	unknown function
UniRef90	UHGV-0042732_29	UniRef90_A0A893WE10	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-0042732_29	411461.DORFOR_01155	105.0	3.36e-28	N/A	N/A
Pfam	UHGV-0042732_29	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0042732_29	PF04448,NF041588	N/A	N/A	N/A	N/A