UHGV-0043570 (vOTU-117706)

Viral Genome: UHGV-0043570

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0043570
vOTU ID	vOTU-117706
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_3543
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9754
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.7
Jumbo phage	No

Genome content
Genome length (bp)	28,477
GC content	30.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	92%
Average CDS length (bps)	546.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0043570_1	K02051	41.5	0.000000000023	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	N/A
UniRef90	UHGV-0043570_1	UniRef90_A0A1C6HWG1	226.0	0	NMT1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0043570_1	1414720.CBYM010000006_gene1188	179.0	0	NMT1/THI5 like	N/A
Pfam	UHGV-0043570_1	PF09084	N/A	N/A	NMT1/THI5 like	NMT1
COG	UHGV-0043570_1	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A
KOfam	UHGV-0043570_2	K06400	364.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0043570_2	phrog_95	388.5	0	integrase	integration and excision
UniRef90	UHGV-0043570_2	UniRef90_A0A1C6HWU7	949.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-0043570_2	1414720.CBYM010000006_gene1187	907.0	0	resolvase	N/A
Pfam	UHGV-0043570_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0043570_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0043570_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0043570_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0043570_2	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_3	phrog_87	87.8	9.2e-26	metallo-protease	other
UniRef90	UHGV-0043570_3	UniRef90_A0A174F3Q6	306.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043570_3	1414720.CBYM010000006_gene1186	309.0	0	Zn peptidase	N/A
COG	UHGV-0043570_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0043570_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0043570_4	K02342	134.7	7.69999e-40	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0043570_4	phrog_192	129.8	1.6e-38	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043570_4	UniRef90_A0A1C6K783	619.0	0	Probable ATP-dependent helicase dinG homolog	N/A
eggNOG-mapper	UHGV-0043570_4	748727.CLJU_c36230	276.0	0	3' exoribonuclease, RNase T-like	N/A
PADLOC	UHGV-0043570_4	cd06127	93.1	2.6e-27	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0043570_4	PF00929	N/A	N/A	Exonuclease	RNase_T
COG	UHGV-0043570_4	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-0043570_4	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-0043570_7	K22299	67.8	2.4e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0043570_7	phrog_8	79.7	4.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0043570_7	UniRef90_A0A1C6K6M9	227.0	0	HTH-type transcriptional regulator immR	N/A
eggNOG-mapper	UHGV-0043570_7	1414720.CBYM010000006_gene1182	139.0	2.64005e-41	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0043570_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0043570_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0043570_7	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0043570_8	K07729	46.5	0.00000000000084	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0043570_8	phrog_3	41.5	0.000000000054	transcriptional repressor	transcription regulation
UniRef90	UHGV-0043570_8	UniRef90_A0A1C6K6N5	129.0	7.28e-38	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0043570_8	1499683.CCFF01000017_gene2618	68.9	0.00000000000000872	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0043570_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0043570_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0043570_12	phrog_130	119.3	3.9e-35	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0043570_12	UniRef90_A0A174F3X7	420.0	0	BRO domain protein	N/A
eggNOG-mapper	UHGV-0043570_12	1414720.CBYM010000063_gene3453	448.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0043570_12	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0043570_12	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0043570_12	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0043570_12	PF03374,PF02498,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043570_14	UniRef90_A0A1C6K6D1	191.0	0	Spo0E like sporulation regulatory protein	N/A
Pfam	UHGV-0043570_14	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
PHROG	UHGV-0043570_15	phrog_155	70.2	3.1e-20	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043570_15	UniRef90_A0A1C6K6Q2	422.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0043570_15	1391647.AVSV01000003_gene1788	206.0	0	ERF superfamily	N/A
Pfam	UHGV-0043570_15	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0043570_15	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_16	phrog_674	126.4	2.5e-37	N/A	unknown function
UniRef90	UHGV-0043570_16	UniRef90_UPI00164AE6E6	415.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043570_16	1415775.U729_2587	192.0	0	N/A	N/A
Pfam	UHGV-0043570_16	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0043570_16	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_18	phrog_2514	123.9	1.1e-36	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043570_18	UniRef90_A0A174F2L9	421.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043570_18	1415775.U729_2588	218.0	0	DnaD domain protein	N/A
COG	UHGV-0043570_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0043570_18	PF09681,PF17214,MF_01819,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_20	phrog_3497	57.2	6.1e-18	N/A	unknown function
UniRef90	UHGV-0043570_20	UniRef90_A0A174EZL9	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043570_20	1280689.AUJC01000003_gene939	112.0	3.67e-30	N/A	N/A
structural_annotation	UHGV-0043570_20	COG5126	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_21	phrog_25509	81.1	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0043570_21	1196322.A370_05735	103.0	2.16e-27	N/A	N/A
KOfam	UHGV-0043570_22	K01160	54.9	0.0000000000000025	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0043570_22	phrog_140	121.6	5.3e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043570_22	UniRef90_A0A1C6K6Q7	267.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0043570_22	1499683.CCFF01000014_gene3920	217.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0043570_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0043570_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0043570_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0043570_23	K03111	135.2	7.80001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0043570_23	phrog_44	138.6	4.19997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043570_23	UniRef90_A0A1C6K705	276.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0043570_23	1414720.CBYM010000001_gene680	203.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0043570_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0043570_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0043570_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0043570_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0043570_23	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043570_24	1414720.CBYM010000001_gene681	474.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043570_27	1414720.CBYM010000040_gene1631	122.0	5.15e-36	N/A	N/A
KOfam	UHGV-0043570_28	K04763	207.0	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0043570_28	phrog_1	180.5	0	integrase	integration and excision
UniRef90	UHGV-0043570_28	UniRef90_A0A174DBC4	651.0	0	Integrase/recombinase (XerC/CodV family)	N/A
eggNOG-mapper	UHGV-0043570_28	1211817.CCAT010000049_gene2471	265.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0043570_28	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0043570_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0043570_28	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0043570_28	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_29	phrog_2245	81.5	1.1e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0043570_29	UniRef90_N9WF59	78.2	6.62e-17	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0043570_29	588581.Cpap_1498	54.3	0.0000000248	COG NOG14118 non supervised orthologous group	N/A
PHROG	UHGV-0043570_30	phrog_36	54.3	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0043570_30	UniRef90_A0A174F044	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043570_30	545697.HMPREF0216_02836	246.0	0	N/A	N/A
structural_annotation	UHGV-0043570_30	PF08281,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0043570_32	K07474	115.2	1.1e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0043570_32	phrog_51	133.6	1.3e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0043570_32	UniRef90_A0A1C6K772	287.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0043570_32	195103.CPF_0948	192.0	0	Terminase small subunit	N/A
Pfam	UHGV-0043570_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0043570_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0043570_32	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0043570_33	K06909	108.0	1.2e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0043570_33	phrog_5653	41.1	0.0000000000016	terminase large subunit	head and packaging
UniRef90	UHGV-0043570_33	UniRef90_A0A1C6GX29	904.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0043570_33	1305708.M9Q2I1_9CAUD	679.0	0	DNA packaging	N/A
Pfam	UHGV-0043570_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
structural_annotation	UHGV-0043570_33	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_34	phrog_533	273.5	0	portal protein	head and packaging
UniRef90	UHGV-0043570_34	UniRef90_A0A1C6GX09	904.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0043570_34	742740.HMPREF9474_03501	520.0	0	N/A	N/A
structural_annotation	UHGV-0043570_34	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_35	phrog_25639	75.5	4.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0043570_35	1282664.H354_06631	62.0	0.00000000000545	N/A	N/A
PHROG	UHGV-0043570_36	phrog_581	262.2	0	minor head protein	head and packaging
UniRef90	UHGV-0043570_36	UniRef90_A0A1C6K723	696.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0043570_36	742740.HMPREF9474_03503	380.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0043570_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0043570_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043570_36	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_37	phrog_2546	62.1	1.4e-17	N/A	unknown function
UniRef90	UHGV-0043570_37	UniRef90_A0A1C6K893	335.0	0	TM2 domain	N/A
eggNOG-mapper	UHGV-0043570_37	552396.HMPREF0863_04116	70.1	0.000000000000671	N/A	N/A
Pfam	UHGV-0043570_37	PF05154	N/A	N/A	TM2 domain	TM2
structural_annotation	UHGV-0043570_37	PF05154,PF02701,COG3478,COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_38	phrog_2303	133.7	1e-39	head scaffolding protein	head and packaging
UniRef90	UHGV-0043570_38	UniRef90_A0A0N7BTJ7	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043570_38	1391647.AVSV01000003_gene1807	201.0	0	N/A	N/A
structural_annotation	UHGV-0043570_38	PF10788	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_39	phrog_422	351.9	0	major head protein	head and packaging
UniRef90	UHGV-0043570_39	UniRef90_UPI000C06A988	540.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0043570_39	1280692.AUJL01000027_gene2160	530.0	0	N/A	N/A
structural_annotation	UHGV-0043570_39	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_40	phrog_1378	84.3	1.1e-24	N/A	unknown function
UniRef90	UHGV-0043570_40	UniRef90_A0A0B3VH35	80.1	3.76e-18	HALZ domain-containing protein	N/A
eggNOG-mapper	UHGV-0043570_40	1280692.AUJL01000027_gene2159	101.0	2.42e-27	N/A	N/A
PHROG	UHGV-0043570_41	phrog_541	83.3	2.4e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0043570_41	742740.HMPREF9474_03507	142.0	2.93012e-42	N/A	N/A
PHROG	UHGV-0043570_42	phrog_8710	166.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0043570_42	1304866.K413DRAFT_0782	145.0	6.02558e-44	N/A	N/A
structural_annotation	UHGV-0043570_42	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_43	phrog_556	41.5	0.00000000001	minor head protein	head and packaging
eggNOG-mapper	UHGV-0043570_43	33035.JPJF01000093_gene2248	186.0	0	N/A	N/A
structural_annotation	UHGV-0043570_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_44	phrog_2595	87.9	1e-25	head-tail connector protein	connector
UniRef90	UHGV-0043570_44	UniRef90_UPI001D0627B3	123.0	1.44e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-0043570_44	1282664.H354_06686	164.0	0	N/A	N/A
Pfam	UHGV-0043570_44	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0043570_44	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_45	phrog_820	138.2	3.59994e-41	major tail protein	tail
eggNOG-mapper	UHGV-0043570_45	1507.HMPREF0262_01184	186.0	0	domain, Protein	N/A
COG	UHGV-0043570_45	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043570_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_46	phrog_8300	105.7	2.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0043570_46	1151292.QEW_2425	118.0	3.37e-33	N/A	N/A
structural_annotation	UHGV-0043570_46	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0043570_47	phrog_8355	108.3	2.3e-32	N/A	unknown function
UniRef90	UHGV-0043570_47	UniRef90_A0A1C6K7X9	152.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0043570_47	1262449.CP6013_3207	80.9	3.25e-19	N/A	N/A
PHROG	UHGV-0043570_48	phrog_1535	269.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0043570_48	UniRef90_A0A1C6GVH2	762.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0043570_48	33035.JPJF01000093_gene2243	478.0	0	phage tail tape measure protein	N/A
COG	UHGV-0043570_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0043570_48	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A