UHGV-0043741 (vOTU-160319)

Viral Genome: UHGV-0043741

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0043741
vOTU ID	vOTU-160319
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_4376
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.46 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.975
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.58
Jumbo phage	No

Genome content
Genome length (bp)	28,833
GC content	46.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	94%
Average CDS length (bps)	599.73
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0043741_1	UniRef90_A0A413LG66	115.0	1.15e-32	GNAT family acetyltransferase	N/A
eggNOG-mapper	UHGV-0043741_2	411470.RUMGNA_03785	72.0	0.0000000000000364	N/A	N/A
UniRef90	UHGV-0043741_3	UniRef90_A0A174XID1	125.0	2.28e-36	Cag pathogenicity island protein	N/A
structural_annotation	UHGV-0043741_3	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043741_4	1235793.C809_04605	74.7	1.25e-17	N/A	N/A
eggNOG-mapper	UHGV-0043741_6	1235790.C805_00098	50.8	0.00000324	N/A	N/A
UniRef90	UHGV-0043741_7	UniRef90_A0A174XWS3	205.0	0	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0043741_7	689781.AUJX01000009_gene401	83.2	5.4e-18	N/A	N/A
Pfam	UHGV-0043741_7	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
Pfam	UHGV-0043741_7	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0043741_7	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0043741_9	K18830	50.3	0.000000000000062	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0043741_9	phrog_8	64.2	3.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0043741_9	UniRef90_UPI0011DDF723	151.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0043741_9	742740.HMPREF9474_01069	95.1	6.13e-25	Helix-turn-helix domain	N/A
Pfam	UHGV-0043741_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0043741_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0043741_9	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0043741_10	K17733	150.9	8.40779e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0043741_10	phrog_2649	130.6	1.5e-38	endolysin	lysis
UniRef90	UHGV-0043741_10	UniRef90_D3ADD3	509.0	0	Cell wall-binding repeat protein	N/A
eggNOG-mapper	UHGV-0043741_10	742733.HMPREF9469_01368	437.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0043741_10	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0043741_10	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0043741_10	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_11	phrog_1129	68.3	8.2e-20	holin	lysis
UniRef90	UHGV-0043741_11	UniRef90_A0A2N0KEV2	141.0	5.5001e-42	Enolase	N/A
eggNOG-mapper	UHGV-0043741_11	742740.HMPREF9474_03522	141.0	4.52619e-43	N/A	N/A
Pfam	UHGV-0043741_11	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0043741_11	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_12	phrog_1009	48.0	0.0000000000002	N/A	unknown function
UniRef90	UHGV-0043741_12	UniRef90_A0A3E2WI44	157.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0043741_12	742740.HMPREF9474_03521	145.0	2.38221e-44	N/A	N/A
PHROG	UHGV-0043741_14	phrog_35834	326.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0043741_14	610130.Closa_0859	94.0	5.36e-19	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0043741_14	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0043741_14	PF16351	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043741_15	768710.DesyoDRAFT_5193	51.6	0.00000832	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0043741_15	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0043741_16	phrog_521	134.8	6.3e-40	tail protein	tail
UniRef90	UHGV-0043741_16	UniRef90_A0A413XD85	386.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043741_16	931276.Cspa_c07900	233.0	0	N/A	N/A
Pfam	UHGV-0043741_16	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0043741_16	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043741_16	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_17	phrog_13589	170.8	0	N/A	unknown function
UniRef90	UHGV-0043741_17	UniRef90_A0A174KVG7	323.0	0	Virion structural protein	N/A
eggNOG-mapper	UHGV-0043741_17	1345695.CLSA_c35400	270.0	0	N/A	N/A
PHROG	UHGV-0043741_18	phrog_6	184.2	0	baseplate protein	tail
UniRef90	UHGV-0043741_18	UniRef90_A0A413LCN6	675.0	0	Baseplate_J domain-containing protein	N/A
eggNOG-mapper	UHGV-0043741_18	1352230.S6AVU3_9CAUD	286.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0043741_18	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
structural_annotation	UHGV-0043741_18	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_19	phrog_120	62.2	8.3e-18	baseplate protein	tail
UniRef90	UHGV-0043741_19	UniRef90_A0A413LCR6	265.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043741_19	1163671.JAGI01000002_gene3046	159.0	0	N/A	N/A
Pfam	UHGV-0043741_19	PF10934	N/A	N/A	N/A	DUF2634
COG	UHGV-0043741_19	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
PHROG	UHGV-0043741_20	phrog_579	50.3	0.000000000000035	N/A	unknown function
UniRef90	UHGV-0043741_20	UniRef90_A0A413LCR1	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043741_20	1536769.P40081_33805	53.1	0.0000000852	N/A	N/A
Pfam	UHGV-0043741_20	PF10844	N/A	N/A	N/A	DUF2577
structural_annotation	UHGV-0043741_20	PF10844	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_21	phrog_400	260.3	0	tail protein	tail
eggNOG-mapper	UHGV-0043741_21	1163671.JAGI01000002_gene3048	470.0	0	PFAM Phage late control gene D protein (GPD)	N/A
COG	UHGV-0043741_21	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
structural_annotation	UHGV-0043741_21	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_22	phrog_380	124.8	7e-37	endolysin	lysis
UniRef90	UHGV-0043741_22	UniRef90_UPI00082A614A	94.7	4.02e-20	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0043741_22	1163671.JAGI01000002_gene3049	367.0	0	positive regulation of growth rate	N/A
COG	UHGV-0043741_22	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0043741_22	PF21821,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_23	phrog_1068	550.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0043741_23	UniRef90_A0A413XDA8	1138.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0043741_23	1163671.JAGI01000002_gene3050	619.0	0	tape measure	N/A
Pfam	UHGV-0043741_23	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0043741_23	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0043741_23	COG5281	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0043741_23	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_25	phrog_389	115.6	3.3e-34	tail protein XkdN-like	tail
UniRef90	UHGV-0043741_25	UniRef90_A0A2S6HYB3	180.0	0	XkdN-like tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0043741_25	1163671.JAGI01000002_gene3052	165.0	0	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0043741_25	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-0043741_25	PF08890,COG4518	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_26	phrog_365	139.0	2.09999e-41	tail protein	tail
UniRef90	UHGV-0043741_26	UniRef90_UPI001177916C	246.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0043741_26	1163671.JAGI01000002_gene3053	270.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0043741_26	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0043741_26	PF09393,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_27	phrog_279	332.7	0	tail sheath	tail
UniRef90	UHGV-0043741_27	UniRef90_A0A413XD92	842.0	0	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-0043741_27	1163671.JAGI01000002_gene3054	612.0	0	Phage tail sheath protein beta-sandwich domain	N/A
Pfam	UHGV-0043741_27	PF17481	N/A	N/A	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
Pfam	UHGV-0043741_27	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0043741_27	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0043741_27	PF17482,PF04984,PF17481,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_29	phrog_525	97.1	1.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0043741_29	768710.DesyoDRAFT_5212	58.9	0.0000000068	N/A	N/A
Pfam	UHGV-0043741_29	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0043741_29	PF20765,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043741_30	UniRef90_UPI0011DCDED9	315.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0043741_30	398512.JQKC01000052_gene2665	57.0	0.0000000543	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0043741_30	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0043741_30	PF04883,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_31	phrog_615	78.2	8.7e-23	head-tail adaptor	connector
structural_annotation	UHGV-0043741_31	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_32	phrog_302	111.5	3.1e-33	virion structural protein	head and packaging
UniRef90	UHGV-0043741_32	UniRef90_A0A413XDA3	343.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043741_32	742738.HMPREF9460_02517	153.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0043741_32	PF13262	N/A	N/A	N/A	DUF4054
structural_annotation	UHGV-0043741_32	PF13262	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_34	phrog_264	201.8	0	major head protein	head and packaging
UniRef90	UHGV-0043741_34	UniRef90_A0A413XDB7	687.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043741_34	742738.HMPREF9460_02515	419.0	0	N/A	N/A
Pfam	UHGV-0043741_34	PF09950	N/A	N/A	N/A	DUF2184
COG	UHGV-0043741_34	COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043741_34	PF09950,MF_04113,TIGR01554,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_35	phrog_563	165.0	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0043741_35	742738.HMPREF9460_02514	208.0	0	N/A	N/A
structural_annotation	UHGV-0043741_35	PF09956	N/A	N/A	N/A	N/A
KOfam	UHGV-0043741_36	K09960	240.2	0	N/A	N/A
PHROG	UHGV-0043741_36	phrog_16985	340.0	0	N/A	unknown function
UniRef90	UHGV-0043741_36	UniRef90_A0A413LCL5	791.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043741_36	1415774.U728_3751	236.0	0	N/A	N/A
Pfam	UHGV-0043741_36	PF09979	N/A	N/A	N/A	DUF2213
COG	UHGV-0043741_36	COG3566	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043741_36	PF09979,TIGR01543,COG3566	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_38	phrog_581	137.5	8.5e-41	minor head protein	head and packaging
UniRef90	UHGV-0043741_38	UniRef90_A0A416U5F1	563.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0043741_38	742738.HMPREF9460_02508	343.0	0	Portal protein	N/A
Pfam	UHGV-0043741_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0043741_38	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0043741_38	PF06152,PF21814	N/A	N/A	N/A	N/A
KOfam	UHGV-0043741_39	K09961	442.6	0	N/A	N/A
PHROG	UHGV-0043741_39	phrog_146	438.8	0	portal protein	head and packaging
UniRef90	UHGV-0043741_39	UniRef90_A0A413LCQ9	964.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043741_39	1007096.BAGW01000022_gene2656	591.0	0	TIGRFAM phage-associated protein, HI1409 family	N/A
Pfam	UHGV-0043741_39	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
NCBIFam	UHGV-0043741_39	TIGR01555.1	N/A	N/A	phage-associated protein, HI1409 family	N/A
COG	UHGV-0043741_39	COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043741_39	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0043741_41	K06909	129.1	4.4e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0043741_41	phrog_10250	146.2	1.90577e-43	N/A	unknown function
UniRef90	UHGV-0043741_41	UniRef90_A0A413LCT2	914.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0043741_41	1211817.CCAT010000003_gene241	520.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0043741_41	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0043741_41	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0043741_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0043741_41	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0043741_42	phrog_2412	148.8	1.96182e-44	N/A	unknown function
UniRef90	UHGV-0043741_42	UniRef90_A0A4V1EFZ3	90.1	9.15e-20	N/A	N/A
eggNOG-mapper	UHGV-0043741_42	742765.HMPREF9457_02118	143.0	1.60995e-41	N/A	N/A
Pfam	UHGV-0043741_42	PF10685	N/A	N/A	Stress-induced bacterial acidophilic repeat motif	KGG
PHROG	UHGV-0043741_43	phrog_1558	160.0	0	N/A	unknown function
UniRef90	UHGV-0043741_43	UniRef90_A0A1C7GFB4	244.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0043741_43	1163671.JAGI01000002_gene3057	192.0	0	N/A	N/A
structural_annotation	UHGV-0043741_43	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043741_44	UniRef90_R6ZHB9	99.8	1.55e-24	Putative bacteriocin ABC transporter	N/A
eggNOG-mapper	UHGV-0043741_44	742733.HMPREF9469_02894	123.0	1.13e-34	N/A	N/A
structural_annotation	UHGV-0043741_44	PF19962,COG1579	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043741_45	PF14192	N/A	N/A	N/A	N/A