UHGV-0045569 (vOTU-110659)

Viral Genome: UHGV-0045569

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0045569
vOTU ID	vOTU-110659
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_14266
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.65 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9829
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.9
Jumbo phage	No

Genome content
Genome length (bp)	25,671
GC content	39.51%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	95%
Average CDS length (bps)	661.87
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0045569_1	K24076	76.4	2e-22	PGRP-LB; peptidoglycan-recognition protein LB [EC:3.5.1.28]	N/A
PHROG	UHGV-0045569_1	phrog_7854	238.5	0	endolysin	lysis
UniRef90	UHGV-0045569_1	UniRef90_UPI001C3B2E98	227.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0045569_1	1235798.C817_04599	234.0	0	Ami_2	N/A
Pfam	UHGV-0045569_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0045569_1	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-0045569_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-0045569_2	phrog_443	53.9	0.0000000000000053	holin	lysis
UniRef90	UHGV-0045569_2	UniRef90_UPI001C0212A6	102.0	6.32e-27	holin	N/A
eggNOG-mapper	UHGV-0045569_2	1235802.C823_05612	84.0	1.72e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0045569_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0045569_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_4	phrog_18593	175.7	0	N/A	unknown function
PHROG	UHGV-0045569_5	phrog_16164	44.5	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0045569_5	476272.RUMHYD_00002	207.0	0	N/A	N/A
PHROG	UHGV-0045569_6	phrog_16164	341.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0045569_6	457412.RSAG_01113	80.1	0.00000000000000338	N/A	N/A
structural_annotation	UHGV-0045569_6	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_7	phrog_25635	542.5	0	N/A	unknown function
UniRef90	UHGV-0045569_7	UniRef90_A0A173RZM4	113.0	4.61e-25	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0045569_7	411462.DORLON_00774	109.0	1.35e-24	N/A	N/A
structural_annotation	UHGV-0045569_7	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_8	phrog_538	186.1	0	minor tail protein	tail
UniRef90	UHGV-0045569_8	UniRef90_UPI001E2C8064	263.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0045569_8	658655.HMPREF0988_02550	275.0	0	N/A	N/A
structural_annotation	UHGV-0045569_8	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_9	phrog_33	70.6	3.4e-20	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0045569_9	658655.HMPREF0988_02551	210.0	0	N/A	N/A
structural_annotation	UHGV-0045569_9	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_10	phrog_6900	254.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0045569_10	UniRef90_UPI000E548070	219.0	0	PblA	N/A
eggNOG-mapper	UHGV-0045569_10	658655.HMPREF0988_02552	336.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0045569_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0045569_10	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_11	phrog_706	156.5	0	N/A	unknown function
UniRef90	UHGV-0045569_11	UniRef90_R6NIL0	375.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0045569_11	411470.RUMGNA_02226	207.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0045569_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0045569_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_12	phrog_4450	117.0	1.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0045569_12	1235792.C808_05374	108.0	6.38e-29	N/A	N/A
Pfam	UHGV-0045569_12	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0045569_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_13	phrog_3099	173.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0045569_13	658655.HMPREF0988_02555	317.0	0	N/A	N/A
structural_annotation	UHGV-0045569_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_14	phrog_3266	169.5	0	tail completion	connector
eggNOG-mapper	UHGV-0045569_14	658655.HMPREF0988_02556	272.0	0	N/A	N/A
structural_annotation	UHGV-0045569_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_15	phrog_556	138.4	1.99993e-41	minor head protein	head and packaging
UniRef90	UHGV-0045569_15	UniRef90_UPI001C8E2A32	209.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0045569_15	411470.RUMGNA_02222	209.0	0	N/A	N/A
structural_annotation	UHGV-0045569_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_16	phrog_3366	89.8	6.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0045569_16	411470.RUMGNA_02221	151.0	0	N/A	N/A
Pfam	UHGV-0045569_16	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0045569_16	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_17	phrog_541	87.1	1.8e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0045569_17	411462.DORLON_00785	63.9	0.0000000000271	N/A	N/A
structural_annotation	UHGV-0045569_17	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_18	phrog_422	230.7	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0045569_18	658655.HMPREF0988_02560	508.0	0	N/A	N/A
structural_annotation	UHGV-0045569_18	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_19	phrog_194	112.8	3.8e-33	head scaffolding protein	head and packaging
UniRef90	UHGV-0045569_19	UniRef90_A5KPA4	310.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0045569_19	411470.RUMGNA_02218	316.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0045569_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0045569_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_20	phrog_13199	97.2	8e-29	N/A	unknown function
eggNOG-mapper	UHGV-0045569_20	476272.RUMHYD_02851	97.8	3.45e-26	N/A	N/A
PHROG	UHGV-0045569_21	phrog_581	342.9	0	minor head protein	head and packaging
UniRef90	UHGV-0045569_21	UniRef90_UPI001EE14397	607.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0045569_21	411470.RUMGNA_02213	686.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0045569_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0045569_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0045569_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_22	phrog_533	340.5	0	portal protein	head and packaging
UniRef90	UHGV-0045569_22	UniRef90_A7B3T1	822.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0045569_22	658655.HMPREF0988_02564	824.0	0	N/A	N/A
structural_annotation	UHGV-0045569_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0045569_23	K06909	83.4	3.6e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0045569_23	phrog_2	88.5	1.4e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0045569_23	UniRef90_R6PMS4	902.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0045569_23	411460.RUMTOR_02085	814.0	0	N/A	N/A
Pfam	UHGV-0045569_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0045569_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0045569_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0045569_23	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_24	phrog_509	259.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0045569_24	UniRef90_R6NFZ0	432.0	0	N/A	N/A
eggNOG-mapper	UHGV-0045569_24	610130.Closa_1389	225.0	0	Putative ATPase subunit of terminase (gpP-like)	N/A
Pfam	UHGV-0045569_24	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-0045569_24	PF11544	N/A	N/A	Spindle pole body component Spc42p	Spc42p
NCBIFam	UHGV-0045569_24	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0045569_24	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0045569_24	PF06056,NF040785,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_25	phrog_15411	437.0	0	N/A	unknown function
UniRef90	UHGV-0045569_25	UniRef90_R6NXQ9	617.0	0	N/A	N/A
eggNOG-mapper	UHGV-0045569_25	1499684.CCNP01000020_gene2275	226.0	0	N/A	N/A
Pfam	UHGV-0045569_25	PF13271	N/A	N/A	N/A	DUF4062
COG	UHGV-0045569_25	COG2865	N/A	N/A	Predicted transcriptional regulator, contains HTH domain	N/A
structural_annotation	UHGV-0045569_25	PF13271,PF14277,MF_00526,NF006747,NF006931,COG4271,COG3373	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_26	phrog_36	79.2	5.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0045569_26	UniRef90_R6ZAS5	147.0	2.90069e-42	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0045569_26	476272.RUMHYD_02841	209.0	0	N/A	N/A
structural_annotation	UHGV-0045569_26	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_27	phrog_6568	70.6	1.7e-20	N/A	unknown function
PHROG	UHGV-0045569_28	phrog_15198	126.8	7.40026e-42	N/A	unknown function
UniRef90	UHGV-0045569_28	UniRef90_R6NRQ0	283.0	0	N/A	N/A
Pfam	UHGV-0045569_28	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0045569_32	K19779	47.3	0.00000000000037	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0045569_32	phrog_599	54.2	0.0000000000000036	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0045569_32	UniRef90_UPI0012B5467F	56.6	0.00000000187	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0045569_32	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0045569_32	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0045569_32	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0045569_32	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0045569_33	phrog_10714	111.4	4.6e-33	N/A	unknown function
UniRef90	UHGV-0045569_33	UniRef90_R6PMU2	219.0	0	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0045569_33	537007.BLAHAN_05460	51.2	0.000000587	N/A	N/A
Pfam	UHGV-0045569_33	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-0045569_35	phrog_37410	123.5	4.4e-37	N/A	unknown function
structural_annotation	UHGV-0045569_35	PF08169,NF037951,COG1918	N/A	N/A	N/A	N/A
KOfam	UHGV-0045569_37	K03111	132.1	7e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0045569_37	phrog_44	141.9	4.30058e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0045569_37	UniRef90_F3AAS3	271.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0045569_37	537007.BLAHAN_04317	233.0	0	N/A	N/A
Pfam	UHGV-0045569_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0045569_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0045569_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0045569_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0045569_37	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A