UHGV-0045936 (vOTU-005837)

Viral Genome: UHGV-0045936

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0045936
vOTU ID	vOTU-005837
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_23247
Associated BioSample	SAMEA2042216
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9785
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.51
Jumbo phage	No

Genome content
Genome length (bp)	37,021
GC content	42.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	95%
Average CDS length (bps)	705.24
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0045936_1	K06400	280.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0045936_1	phrog_95	310.3	0	integrase	integration and excision
UniRef90	UHGV-0045936_1	UniRef90_UPI001D0DC2F1	787.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0045936_1	1123075.AUDP01000026_gene425	389.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0045936_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0045936_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0045936_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0045936_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0045936_2	1235800.C819_02268	141.0	1.06e-38	N/A	N/A
PHROG	UHGV-0045936_3	phrog_4	41.2	0.000000000035	transcriptional repressor	transcription regulation
UniRef90	UHGV-0045936_3	UniRef90_UPI00156EE44C	259.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0045936_3	1235792.C808_00647	101.0	5.67e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0045936_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0045936_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0045936_3	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0045936_6	1235792.C808_00637	47.0	0.00000203	N/A	N/A
PHROG	UHGV-0045936_9	phrog_3584	150.6	9.80909e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0045936_9	1235792.C808_03084	247.0	0	N/A	N/A
structural_annotation	UHGV-0045936_9	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-0045936_10	UniRef90_A0A1C6IUE3	174.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0045936_10	411461.DORFOR_01140	90.5	5.77e-21	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-0045936_10	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0045936_10	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0045936_12	K03496	194.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0045936_12	phrog_164	148.9	3.36312e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0045936_12	UniRef90_A0A417PG63	441.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0045936_12	97139.C824_00725	244.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0045936_12	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0045936_12	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0045936_12	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0045936_13	K03497	51.1	0.000000000000024	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0045936_13	phrog_15982	102.0	2.1e-30	N/A	unknown function
UniRef90	UHGV-0045936_13	UniRef90_A0A417ANM7	989.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0045936_13	1235792.C808_00610	149.0	2.49e-36	ParB-like nuclease domain	N/A
Pfam	UHGV-0045936_13	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0045936_13	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0045936_13	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0045936_15	UniRef90_A0A1Q6JLU8	58.5	0.0000000687	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0045936_15	411470.RUMGNA_00212	179.0	0	N/A	N/A
PHROG	UHGV-0045936_19	phrog_3502	41.5	0.000000000026	N/A	unknown function
UniRef90	UHGV-0045936_19	UniRef90_A0A417ANR7	174.0	0	LexA_DNA_bind domain-containing protein	N/A
Pfam	UHGV-0045936_19	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0045936_19	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0045936_19	PF01726,MF_00732,TIGR00738,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0045936_21	K03111	134.6	1.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0045936_21	phrog_44	127.1	1.4e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0045936_21	UniRef90_A0A417PG59	225.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0045936_21	457412.RSAG_03244	214.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0045936_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0045936_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0045936_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0045936_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0045936_21	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_23	phrog_7566	94.1	7.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0045936_23	411459.RUMOBE_00948	97.8	1.57e-24	N/A	N/A
PHROG	UHGV-0045936_24	phrog_6072	44.6	0.0000000000014	N/A	unknown function
PHROG	UHGV-0045936_25	phrog_11237	64.7	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0045936_25	1235798.C817_02584	103.0	2.32e-26	N/A	N/A
PHROG	UHGV-0045936_27	phrog_119	47.5	0.00000000000023	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0045936_27	UniRef90_A0A417PG49	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0045936_27	1235792.C808_00081	142.0	2.5924e-43	HNH nucleases	N/A
Pfam	UHGV-0045936_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0045936_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0045936_28	phrog_5110	98.2	4.9e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0045936_28	UniRef90_A0A1M6MVK9	154.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0045936_28	1235792.C808_00082	162.0	0	N/A	N/A
Pfam	UHGV-0045936_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0045936_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_29	phrog_9	250.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0045936_29	UniRef90_A0A417PG72	1160.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0045936_29	1235792.C808_00083	932.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0045936_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0045936_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0045936_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0045936_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_30	phrog_12	98.7	4.8e-29	portal protein	head and packaging
UniRef90	UHGV-0045936_30	UniRef90_A0A417PG64	731.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0045936_30	1235792.C808_00084	425.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0045936_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0045936_30	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0045936_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0045936_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0045936_31	K01358	118.2	9.7e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0045936_31	phrog_94	208.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0045936_31	UniRef90_A0A417PG92	518.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0045936_31	1235792.C808_00085	286.0	0	Clp protease	N/A
Pfam	UHGV-0045936_31	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0045936_31	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0045936_31	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_32	phrog_10	128.2	9.5e-38	major head protein	head and packaging
UniRef90	UHGV-0045936_32	UniRef90_A0A417PG62	904.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0045936_32	1235792.C808_00086	678.0	0	Phage capsid family	N/A
Pfam	UHGV-0045936_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0045936_32	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0045936_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0045936_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0045936_32	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_33	phrog_749	71.9	7.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0045936_33	1235792.C808_00087	135.0	3.81e-40	N/A	N/A
eggNOG-mapper	UHGV-0045936_34	1235792.C808_00088	137.0	1.12e-39	N/A	N/A
structural_annotation	UHGV-0045936_34	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_35	phrog_5	49.5	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0045936_35	UniRef90_A0A417PG70	225.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0045936_35	397287.C807_04036	98.6	6.92e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0045936_35	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0045936_35	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_36	phrog_78	42.1	0.000000000013	tail terminator	connector
eggNOG-mapper	UHGV-0045936_36	610130.Closa_0748	129.0	1.12e-37	N/A	N/A
structural_annotation	UHGV-0045936_36	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_37	phrog_88	153.0	1.4013e-45	major tail protein	tail
UniRef90	UHGV-0045936_37	UniRef90_A0A417ANR0	397.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0045936_37	764299.STRIC_2428	236.0	0	phage tail protein	N/A
NCBIFam	UHGV-0045936_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0045936_37	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_38	phrog_709	118.1	4.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0045936_38	610130.Closa_0750	143.0	2.4803e-42	N/A	N/A
structural_annotation	UHGV-0045936_38	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_39	phrog_3033	68.2	9.4e-20	N/A	unknown function
UniRef90	UHGV-0045936_39	UniRef90_A0A2X2UJ60	80.9	3.89e-19	Phage-like protein	N/A
eggNOG-mapper	UHGV-0045936_39	1235799.C818_01010	86.7	3.35e-22	N/A	N/A
KOfam	UHGV-0045936_40	K10421	52.5	0.0000000000000044	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0045936_40	phrog_1272	477.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0045936_40	UniRef90_A0A417PG60	1753.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0045936_40	1235799.C818_00430	526.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0045936_40	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0045936_40	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0045936_40	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0045936_40	PF10145,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_41	phrog_33	48.4	0.0000000000002	distal tail protein Dit	tail
UniRef90	UHGV-0045936_41	UniRef90_A0A1M6MWV9	313.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0045936_41	1235792.C808_00094	292.0	0	phage tail	N/A
COG	UHGV-0045936_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0045936_41	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_42	phrog_9886	801.4	0	N/A	unknown function
UniRef90	UHGV-0045936_42	UniRef90_A0A417PG56	2194.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0045936_42	1123075.AUDP01000020_gene1524	704.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0045936_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0045936_42	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0045936_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0045936_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0045936_44	phrog_17147	442.2	0	N/A	unknown function
UniRef90	UHGV-0045936_44	UniRef90_A0A1M6MWL0	664.0	0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-0045936_44	33035.JPJF01000043_gene1001	671.0	0	N/A	N/A
KOfam	UHGV-0045936_45	K00986	70.2	2.9e-20	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0045936_45	phrog_1423	176.9	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0045936_45	UniRef90_A0A417ANK1	747.0	0	Reverse transcriptase	N/A
eggNOG-mapper	UHGV-0045936_45	33035.JPJF01000043_gene1000	459.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0045936_45	icity0040	41.9	0.0000000000014	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0045936_45	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0045936_45	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0045936_45	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0045936_46	457412.RSAG_04672	104.0	1.45e-27	N/A	N/A
PHROG	UHGV-0045936_47	phrog_1382	45.4	0.00000000000064	N/A	unknown function
PHROG	UHGV-0045936_48	phrog_937	65.4	1.1e-18	hemolysin	other
eggNOG-mapper	UHGV-0045936_48	411459.RUMOBE_01081	124.0	1.58e-34	N/A	N/A
PHROG	UHGV-0045936_49	phrog_443	74.9	1.6e-21	holin	lysis
UniRef90	UHGV-0045936_49	UniRef90_UPI000E5CA950	120.0	7.62e-34	holin	N/A
eggNOG-mapper	UHGV-0045936_49	626523.GCWU000342_01012	87.0	2.38e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0045936_49	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0045936_49	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0045936_50	K07273	190.3	0	acm; lysozyme	N/A
PHROG	UHGV-0045936_50	phrog_6745	158.5	0	endolysin	lysis
UniRef90	UHGV-0045936_50	UniRef90_UPI0018972B9E	806.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0045936_50	1121115.AXVN01000006_gene2170	351.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0045936_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0045936_50	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0045936_50	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0045936_50	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0045936_50	PF01183,PF05382,NF003627,TIGR02219,COG3757	N/A	N/A	N/A	N/A