UHGV-0046103 (vOTU-038082)

Viral Genome: UHGV-0046103

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0046103
vOTU ID	vOTU-038082
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_27158
Associated BioSample	SAMEA2042578
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.59 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.09
Jumbo phage	No

Genome content
Genome length (bp)	25,961
GC content	39.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	91%
Average CDS length (bps)	473.10
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0046103_2	phrog_544	138.9	3.59994e-41	major head protein	head and packaging
UniRef90	UHGV-0046103_2	UniRef90_A0A395X7A1	352.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0046103_2	476272.RUMHYD_01776	313.0	0	N/A	N/A
structural_annotation	UHGV-0046103_2	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_3	phrog_194	55.8	0.0000000000000011	head scaffolding protein	head and packaging
UniRef90	UHGV-0046103_3	UniRef90_UPI000E538A87	109.0	3.35e-26	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0046103_3	476272.RUMHYD_01775	104.0	5.52e-25	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0046103_3	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0046103_5	phrog_1233	45.5	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0046103_5	397290.C810_01336	120.0	3.66e-34	N/A	N/A
structural_annotation	UHGV-0046103_5	PF20352,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0046103_6	658655.HMPREF0988_00915	120.0	6.65e-31	N/A	N/A
PHROG	UHGV-0046103_7	phrog_20016	216.7	0	N/A	unknown function
UniRef90	UHGV-0046103_7	UniRef90_A0A285PT46	155.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0046103_7	397290.C810_05214	221.0	0	N/A	N/A
structural_annotation	UHGV-0046103_7	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_8	phrog_16490	217.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0046103_8	397290.C810_01328	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046103_9	658655.HMPREF0988_00918	87.8	4.51e-22	N/A	N/A
eggNOG-mapper	UHGV-0046103_10	658655.HMPREF0988_00919	84.3	1.19e-18	N/A	N/A
PHROG	UHGV-0046103_12	phrog_581	211.6	0	minor head protein	head and packaging
UniRef90	UHGV-0046103_12	UniRef90_A0A6L5YIK0	578.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0046103_12	645991.Sgly_0338	165.0	2.46068e-42	N/A	N/A
Pfam	UHGV-0046103_12	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0046103_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046103_12	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_13	phrog_556	85.7	4.4e-25	minor head protein	head and packaging
UniRef90	UHGV-0046103_13	UniRef90_UPI000E4A8F9F	121.0	3.88e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-0046103_13	1449050.JNLE01000003_gene3886	51.2	0.00000189	N/A	N/A
Pfam	UHGV-0046103_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-0046103_15	phrog_533	251.1	0	portal protein	head and packaging
UniRef90	UHGV-0046103_15	UniRef90_A0A3R5WTT1	926.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0046103_15	476272.RUMHYD_01758	327.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0046103_15	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0046103_16	K06909	212.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0046103_16	phrog_5653	96.2	2.2e-28	terminase large subunit	head and packaging
UniRef90	UHGV-0046103_16	UniRef90_A0A3R5WSV0	1069.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0046103_16	33035.JPJF01000106_gene3136	308.0	0	Terminase small subunit	N/A
Pfam	UHGV-0046103_16	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0046103_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0046103_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0046103_16	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_17	phrog_33130	91.5	4.6e-27	N/A	unknown function
UniRef90	UHGV-0046103_17	UniRef90_A0A3B9CD52	126.0	3.44e-36	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0046103_17	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-0046103_21	K07727	41.8	0.000000000026	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0046103_21	UniRef90_A0A3R5WW48	138.0	2.09004e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0046103_21	1235799.C818_04243	111.0	1.16e-31	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0046103_21	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0046103_21	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046103_25	UniRef90_A0A412KFA7	140.0	4.15065e-42	ABC transporter ATP-binding protein	N/A
KOfam	UHGV-0046103_30	K00558	224.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0046103_30	phrog_116	266.4	0	DNA methyltransferase	other
UniRef90	UHGV-0046103_30	UniRef90_A0A1C5S2H5	900.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0046103_30	1235800.C819_02255	674.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0046103_30	MTase_II_00020	112.2	3e-36	Type II methyltransferase	RM
Pfam	UHGV-0046103_30	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0046103_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0046103_30	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_32	phrog_424	90.3	2.7e-26	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0046103_32	UniRef90_A0A3D5WJX6	444.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0046103_32	1410650.JHWL01000037_gene617	262.0	0	sulfate reduction	N/A
COG	UHGV-0046103_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0046103_32	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_34	phrog_13489	43.3	0.0000000000071	N/A	unknown function
eggNOG-mapper	UHGV-0046103_34	1158602.I590_00660	48.1	0.00000484	N/A	N/A
PHROG	UHGV-0046103_35	phrog_874	165.2	0	N/A	unknown function
UniRef90	UHGV-0046103_35	UniRef90_A0A6N7W7Q7	196.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0046103_35	411468.CLOSCI_00298	194.0	0	N/A	N/A
structural_annotation	UHGV-0046103_35	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_36	phrog_20593	62.1	6.9e-18	N/A	unknown function
PHROG	UHGV-0046103_37	phrog_599	47.5	0.0000000000004	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0046103_37	UniRef90_A0A412KFB8	167.0	0	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-0046103_37	1235790.C805_00069	82.0	1.33e-19	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0046103_37	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0046103_37	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0046103_37	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046103_38	UniRef90_UPI00192387A0	94.7	9.17e-22	N/A	N/A
PHROG	UHGV-0046103_39	phrog_8684	94.0	1.3e-27	N/A	unknown function
UniRef90	UHGV-0046103_39	UniRef90_UPI001C0135E5	260.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0046103_39	457412.RSAG_01162	74.3	0.00000000000000882	YopX protein	N/A
Pfam	UHGV-0046103_39	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0046103_39	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0046103_39	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046103_40	UniRef90_A0A6L5YG37	87.4	7.32e-20	N/A	N/A
eggNOG-mapper	UHGV-0046103_40	397288.C806_00098	53.5	0.000000343	N/A	N/A
KOfam	UHGV-0046103_43	K02315	147.1	1.49939e-43	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0046103_43	phrog_50	144.6	8.29569e-43	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046103_43	UniRef90_A0A1Q6KIH9	413.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0046103_43	742733.HMPREF9469_01844	227.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0046103_43	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0046103_43	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0046103_43	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_44	phrog_19658	45.3	0.00000000000094	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0046103_44	1071400.LBUCD034_0926	114.0	2.9e-27	DnaD domain protein	N/A
COG	UHGV-0046103_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0046103_44	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_45	phrog_1682	73.1	4.2e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046103_45	UniRef90_A0A412FH46	252.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0046103_45	1235790.C805_00029	161.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0046103_45	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0046103_45	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0046103_45	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_47	phrog_7566	100.4	9.9e-30	N/A	unknown function
UniRef90	UHGV-0046103_47	UniRef90_A0A412KF94	207.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0046103_47	411902.CLOBOL_05695	57.0	0.00000000257	N/A	N/A
PHROG	UHGV-0046103_48	phrog_72	53.2	0.000000000000004	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0046103_48	1304866.K413DRAFT_1197	119.0	1.14e-31	N/A	N/A
PHROG	UHGV-0046103_49	phrog_155	122.3	3.9e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046103_49	UniRef90_A0A412KFC1	439.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0046103_49	357809.Cphy_2988	221.0	0	ERF superfamily	N/A
Pfam	UHGV-0046103_49	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0046103_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0046103_49	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0046103_50	phrog_674	74.5	1.5e-21	N/A	unknown function
UniRef90	UHGV-0046103_50	UniRef90_A0A3R6B153	333.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046103_50	411460.RUMTOR_02065	92.4	4.43e-19	N/A	N/A
Pfam	UHGV-0046103_50	PF07083	N/A	N/A	N/A	DUF1351