UHGV-0046304 (vOTU-010581)

Viral Genome: UHGV-0046304

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0046304
vOTU ID	vOTU-010581
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_26315
Associated BioSample	SAMEA2042911
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.98 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.959
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.11
Jumbo phage	No

Genome content
Genome length (bp)	24,285
GC content	36.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	79%
Average CDS length (bps)	550.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0046304_1	UniRef90_UPI001F0320C0	97.4	8.67e-25	capsular biosynthesis protein	N/A
eggNOG-mapper	UHGV-0046304_1	1408323.JQKK01000004_gene2360	98.2	1.29e-25	D,D-heptose 1,7-bisphosphate phosphatase	N/A
COG	UHGV-0046304_1	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
KOfam	UHGV-0046304_2	K19167	55.4	0.0000000000000016	abiQ; protein AbiQ	N/A
PHROG	UHGV-0046304_2	phrog_9764	57.5	3.2e-16	N/A	unknown function
UniRef90	UHGV-0046304_2	UniRef90_A0A3E3DP64	147.0	3.9937e-43	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0046304_2	999413.HMPREF1094_04511	89.0	2.5e-20	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0046304_2	AbiQ	53.1	0.000000000000016	AbiQ	Abi
Pfam	UHGV-0046304_2	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
KOfam	UHGV-0046304_3	K04763	211.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0046304_3	phrog_1	190.0	0	integrase	integration and excision
UniRef90	UHGV-0046304_3	UniRef90_A0A1W1X195	348.0	0	Integrase/recombinase XerD	N/A
eggNOG-mapper	UHGV-0046304_3	1540257.JQMW01000009_gene3340	340.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0046304_3	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0046304_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0046304_3	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0046304_3	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_4	phrog_937	57.2	3.5e-16	hemolysin	other
eggNOG-mapper	UHGV-0046304_4	1007096.BAGW01000017_gene814	51.6	0.000000346	N/A	N/A
PHROG	UHGV-0046304_5	phrog_1067	320.5	0	minor head protein	head and packaging
UniRef90	UHGV-0046304_5	UniRef90_A0A0X8VB37	539.0	0	Prophage endopeptidase tail	N/A
eggNOG-mapper	UHGV-0046304_5	1443125.Z962_05575	246.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0046304_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0046304_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0046304_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0046304_5	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_6	phrog_2310	64.1	1.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0046304_6	1460635.JCM19038_2823	48.1	0.000000407	N/A	N/A
PHROG	UHGV-0046304_8	phrog_863	60.6	2.9e-17	tail fiber assembly	tail
UniRef90	UHGV-0046304_8	UniRef90_R5AIX9	176.0	0	BppU_N domain-containing protein	N/A
Pfam	UHGV-0046304_8	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0046304_8	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-0046304_8	COG3209	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_9	phrog_33	106.4	4.8e-31	distal tail protein Dit	tail
UniRef90	UHGV-0046304_9	UniRef90_A0A350TW29	455.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0046304_9	545697.HMPREF0216_00910	185.0	0	tail component	N/A
Pfam	UHGV-0046304_9	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0046304_9	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0046304_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0046304_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_10	phrog_1272	333.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0046304_10	UniRef90_A0A0X1U6Z5	749.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0046304_10	642492.Clole_1867	317.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0046304_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0046304_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0046304_12	phrog_2175	94.0	1.7e-27	protein with Ig domain	other
eggNOG-mapper	UHGV-0046304_12	1219626.HMPREF1639_07450	230.0	0	N/A	N/A
structural_annotation	UHGV-0046304_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046304_13	PF06141,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046304_14	UniRef90_UPI00085CD908	91.3	8.46e-22	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0046304_14	768710.DesyoDRAFT_3136	55.1	0.0000000179	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0046304_14	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046304_15	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_17	phrog_544	83.0	4.3e-24	major head protein	head and packaging
UniRef90	UHGV-0046304_17	UniRef90_A0A6N3FT63	249.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0046304_17	642492.Clole_0972	340.0	0	N/A	N/A
structural_annotation	UHGV-0046304_17	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_18	phrog_172	81.3	1.8e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0046304_18	UniRef90_UPI00085C378A	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046304_18	642492.Clole_0971	73.2	0.000000000000227	N/A	N/A
Pfam	UHGV-0046304_18	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0046304_18	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_19	phrog_115	122.7	3.3e-36	minor head protein	head and packaging
UniRef90	UHGV-0046304_19	UniRef90_A0A0X8VEJ5	310.0	0	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0046304_19	642492.Clole_0969	155.0	1.1911e-43	cell adhesion	N/A
COG	UHGV-0046304_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046304_19	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_20	phrog_64	346.5	0	portal protein	head and packaging
UniRef90	UHGV-0046304_20	UniRef90_A0A110A7P9	615.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0046304_20	642492.Clole_0968	244.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0046304_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0046304_20	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0046304_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0046304_21	K06909	338.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0046304_21	phrog_3717	198.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0046304_21	UniRef90_A0A0X8VB17	706.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0046304_21	86416.Clopa_1892	358.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0046304_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0046304_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0046304_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0046304_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0046304_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0046304_22	phrog_2538	40.9	0.000000000035	terminase small subunit	head and packaging
UniRef90	UHGV-0046304_22	UniRef90_A0A3D4VTN0	112.0	5.97e-29	HTH_8 domain-containing protein	N/A
Pfam	UHGV-0046304_22	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
PHROG	UHGV-0046304_24	phrog_13256	73.1	2.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0046304_24	1226322.HMPREF1545_00132	71.2	0.00000000000000101	N/A	N/A
KOfam	UHGV-0046304_25	K00571	124.4	4.7e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0046304_25	phrog_18293	149.9	8.40779e-45	methyltransferase	other
UniRef90	UHGV-0046304_25	UniRef90_A0A832Q1E6	291.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0046304_25	755731.Clo1100_1145	177.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0046304_25	MTase_II_00037	103.3	3.78351e-44	Type II methyltransferase	RM
Pfam	UHGV-0046304_25	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0046304_25	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0046304_25	PF01555,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0046304_26	K18843	40.5	0.000000000057	hicB; antitoxin HicB	N/A
PHROG	UHGV-0046304_26	phrog_497	67.0	3.8e-19	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0046304_26	UniRef90_A0A1I5LYR1	168.0	0	Predicted nuclease of the RNAse H fold, HicB family	N/A
eggNOG-mapper	UHGV-0046304_26	1408311.JNJM01000003_gene2816	166.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0046304_26	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0046304_26	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0046304_26	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0046304_27	K07339	66.4	4e-19	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0046304_27	phrog_353	50.4	0.000000000000029	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0046304_27	UniRef90_UPI0016511A60	97.4	3.68e-25	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0046304_27	665956.HMPREF1032_00122	95.1	5.2e-25	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0046304_27	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-0046304_28	PF11645,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0046304_29	397290.C810_01731	64.3	0.00000000000668	N/A	N/A
PHROG	UHGV-0046304_30	phrog_36702	78.7	8.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0046304_30	397290.C810_01700	140.0	7.01e-35	N/A	N/A
UniRef90	UHGV-0046304_31	UniRef90_A0A4S2HFY1	54.3	0.0000000246	N/A	N/A
eggNOG-mapper	UHGV-0046304_31	397288.C806_01227	57.0	0.000000000317	N/A	N/A
UniRef90	UHGV-0046304_34	UniRef90_A0A401LF18	79.3	6.05e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0046304_34	1121289.JHVL01000006_gene2897	54.7	0.00000000485	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0046304_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0046304_34	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0046304_35	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin