UHGV-0046756 (vOTU-067205)

Viral Genome: UHGV-0046756

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0046756
vOTU ID	vOTU-067205
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_3121
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9529
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.54
Jumbo phage	No

Genome content
Genome length (bp)	42,452
GC content	28.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	81%
Average CDS length (bps)	579.81
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0046756_1	K03657	453.9	0	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	N/A
PHROG	UHGV-0046756_1	phrog_1967	350.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046756_1	UniRef90_UPI000591497B	1307.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0046756_1	1499683.CCFF01000017_gene2105	1307.0	0	helicase	N/A
PADLOC	UHGV-0046756_1	GajB_00015	236.0	0	UrvD helicase	Gabija
Pfam	UHGV-0046756_1	PF00580	N/A	N/A	UvrD/REP helicase N-terminal domain	UvrD-helicase
Pfam	UHGV-0046756_1	PF13361	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C
COG	UHGV-0046756_1	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
structural_annotation	UHGV-0046756_1	PF00580,PF13361,PF12073,MF_01920,NF008743,COG0210	N/A	N/A	N/A	N/A
KOfam	UHGV-0046756_2	K04763	124.6	1.3e-36	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0046756_2	phrog_1	127.1	1.8e-37	integrase	integration and excision
UniRef90	UHGV-0046756_2	UniRef90_UPI00058E2272	655.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0046756_2	1499683.CCFF01000017_gene2106	655.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0046756_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0046756_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0046756_2	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_3	phrog_270	48.0	0.00000000000027	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046756_3	UniRef90_UPI00058DC3CE	270.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0046756_3	1499683.CCFF01000017_gene2107	270.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0046756_3	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
eggNOG-mapper	UHGV-0046756_4	1499683.CCFF01000017_gene2110	372.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046756_5	1499683.CCFF01000017_gene2111	196.0	0	N/A	N/A
PHROG	UHGV-0046756_7	phrog_12047	86.5	4.1e-25	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0046756_7	1499683.CCFF01000017_gene2113	304.0	0	N/A	N/A
KOfam	UHGV-0046756_9	K07448	65.4	1e-18	mrr; restriction system protein	N/A
PHROG	UHGV-0046756_9	phrog_17577	56.2	2.9e-16	restriction endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046756_9	UniRef90_UPI0018CF180A	290.0	0	restriction endonuclease	N/A
eggNOG-mapper	UHGV-0046756_9	1499683.CCFF01000017_gene2115	362.0	0	Restriction endonuclease	N/A
Pfam	UHGV-0046756_9	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0046756_9	COG1715	N/A	N/A	Restriction endonuclease Mrr	N/A
UniRef90	UHGV-0046756_11	UniRef90_UPI000AABEC73	142.0	2.95674e-43	LLM class flavin-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0046756_11	1499683.CCFF01000017_gene2117	142.0	5.74532e-44	N/A	N/A
structural_annotation	UHGV-0046756_11	PF20075,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0046756_13	1280689.AUJC01000023_gene1967	58.9	0.000000000348	N/A	N/A
NCBIFam	UHGV-0046756_13	TIGR04104.1	N/A	N/A	TIGR04104 family putative zinc finger protein	N/A
eggNOG-mapper	UHGV-0046756_15	1499683.CCFF01000017_gene2120	136.0	2.51001e-41	N/A	N/A
structural_annotation	UHGV-0046756_19	PF20317,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046756_22	UniRef90_UPI000BF790AF	91.7	0.00000000000000146	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-0046756_22	1499683.CCFF01000017_gene2126	1245.0	0	N/A	N/A
structural_annotation	UHGV-0046756_22	PF00270,MF_02205,TIGR01407,COG1199	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046756_23	PF18903	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_24	phrog_8308	253.4	0	N/A	unknown function
UniRef90	UHGV-0046756_24	UniRef90_Q97JY3	329.0	0	Phage related protein, YonO B.subtilis homolog	N/A
eggNOG-mapper	UHGV-0046756_24	1499683.CCFF01000017_gene2128	1826.0	0	N/A	N/A
structural_annotation	UHGV-0046756_24	PF05183	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046756_28	UniRef90_UPI00058DD713	191.0	0	GIY-YIG nuclease family protein	N/A
PHROG	UHGV-0046756_34	phrog_478	125.9	1.8e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0046756_34	UniRef90_A0A0U2WUA4	171.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0046756_34	1499683.CCFF01000017_gene2138	265.0	0	N/A	N/A
UniRef90	UHGV-0046756_35	UniRef90_UPI0009DD7BE0	124.0	1.87e-36	zinc-ribbon domain containing protein	N/A
eggNOG-mapper	UHGV-0046756_35	332101.JIBU02000059_gene2610	60.5	0.00000000000925	Probable zinc-ribbon domain	N/A
Pfam	UHGV-0046756_35	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-0046756_35	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
PHROG	UHGV-0046756_37	phrog_2538	65.9	6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0046756_37	UniRef90_UPI001967DBF7	181.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0046756_37	1499683.CCFF01000017_gene2141	294.0	0	N/A	N/A
Pfam	UHGV-0046756_37	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0046756_37	PF13022,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0046756_38	K04763	186.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0046756_38	phrog_216	140.3	9.99967e-42	integrase	integration and excision
UniRef90	UHGV-0046756_38	UniRef90_A0A6M0SUC0	298.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0046756_38	1499683.CCFF01000017_gene2142	379.0	0	Phage integrase family	N/A
Pfam	UHGV-0046756_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0046756_38	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0046756_38	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_39	phrog_38	208.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0046756_39	UniRef90_A0A6M1VQP6	773.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0046756_39	1499683.CCFF01000017_gene2143	1148.0	0	TIGRFAM Phage	N/A
COG	UHGV-0046756_39	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0046756_39	PF17289,PF03354,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_40	phrog_64	262.4	0	portal protein	head and packaging
UniRef90	UHGV-0046756_40	UniRef90_UPI0006948AA9	843.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0046756_40	1499683.CCFF01000017_gene2144	842.0	0	portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0046756_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0046756_40	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_41	phrog_115	154.1	1.4013e-45	minor head protein	head and packaging
UniRef90	UHGV-0046756_41	UniRef90_UPI0005A64308	576.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0046756_41	1499683.CCFF01000017_gene2145	576.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0046756_41	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0046756_41	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0046756_41	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046756_41	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_42	phrog_172	74.2	2.7e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0046756_42	UniRef90_UPI00058FD64F	397.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046756_42	1499683.CCFF01000017_gene2146	397.0	0	N/A	N/A
Pfam	UHGV-0046756_42	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0046756_42	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_43	phrog_544	273.0	0	major head protein	head and packaging
UniRef90	UHGV-0046756_43	UniRef90_UPI00058FA11F	534.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0046756_43	1499683.CCFF01000017_gene2147	534.0	0	N/A	N/A
NCBIFam	UHGV-0046756_43	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0046756_43	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046756_44	UniRef90_UPI0013C967CA	65.1	0.00000000000823	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0046756_44	573061.Clocel_3540	70.9	0.00000000000000933	N/A	N/A
eggNOG-mapper	UHGV-0046756_45	1499683.CCFF01000017_gene2149	216.0	0	N/A	N/A
structural_annotation	UHGV-0046756_45	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_46	phrog_5	43.7	0.0000000000077	tail completion or Neck1 protein	connector
UniRef90	UHGV-0046756_46	UniRef90_UPI00058EA0FC	208.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0046756_46	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0046756_46	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046756_47	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_48	phrog_885	44.8	0.0000000000014	major tail protein	tail
structural_annotation	UHGV-0046756_48	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_51	phrog_9959	98.6	4e-29	tail length tape measure protein	tail
UniRef90	UHGV-0046756_51	UniRef90_UPI0006939F80	949.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0046756_51	1499683.CCFF01000017_gene2155	949.0	0	tape measure	N/A
Pfam	UHGV-0046756_51	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0046756_51	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0046756_51	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0046756_51	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_52	phrog_33	97.7	2.1e-28	distal tail protein Dit	tail
UniRef90	UHGV-0046756_52	UniRef90_UPI00058D3907	491.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0046756_52	1499683.CCFF01000017_gene2156	491.0	0	tail component	N/A
Pfam	UHGV-0046756_52	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0046756_52	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0046756_52	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0046756_52	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0046756_54	phrog_7043	342.5	0	tail protein	tail
UniRef90	UHGV-0046756_54	UniRef90_UPI000693DC75	1285.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0046756_54	1499683.CCFF01000017_gene2158	1285.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0046756_54	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0046756_54	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0046756_54	COG4926	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-0046756_56	1499683.CCFF01000017_gene2160	353.0	0	N/A	N/A
KOfam	UHGV-0046756_57	K03657	55.2	0.000000000000001	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	N/A
PHROG	UHGV-0046756_57	phrog_1967	40.9	0.000000000017	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046756_57	UniRef90_A0A645J0D3	117.0	2.51e-31	DNA helicase	N/A
eggNOG-mapper	UHGV-0046756_57	1499683.CCFF01000017_gene2105	251.0	0	helicase	N/A
Pfam	UHGV-0046756_57	PF13361	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C
COG	UHGV-0046756_57	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
KOfam	UHGV-0046756_58	K01972	48.7	0.000000000000084	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	N/A
PHROG	UHGV-0046756_58	phrog_3869	42.0	0.0000000000088	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046756_58	UniRef90_UPI00058F64B3	233.0	0	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0046756_58	1499683.CCFF01000017_gene2162	224.0	0	breast cancer carboxy-terminal domain	N/A
Pfam	UHGV-0046756_58	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0046756_58	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
eggNOG-mapper	UHGV-0046756_59	1499683.CCFF01000017_gene2163	81.6	0.00000000000000248	repeat protein	N/A
COG	UHGV-0046756_59	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A