UHGV-0046972 (vOTU-067943)

Viral Genome: UHGV-0046972

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0046972
vOTU ID	vOTU-067943
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_3961
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.65 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.11
Jumbo phage	No

Genome content
Genome length (bp)	33,913
GC content	41.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	90%
Average CDS length (bps)	524.33
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0046972_1	phrog_1382	71.4	4.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0046972_1	411461.DORFOR_00727	89.0	1.89e-22	N/A	N/A
PHROG	UHGV-0046972_2	phrog_12931	97.0	1.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0046972_2	411461.DORFOR_00728	118.0	1.36e-32	N/A	N/A
structural_annotation	UHGV-0046972_2	PF10618	N/A	N/A	N/A	N/A
KOfam	UHGV-0046972_4	K03733	206.1	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0046972_4	phrog_1	163.2	0	integrase	integration and excision
UniRef90	UHGV-0046972_4	UniRef90_A0A174ILR0	625.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0046972_4	411468.CLOSCI_02414	484.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0046972_4	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0046972_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0046972_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0046972_4	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_6	phrog_25635	261.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0046972_6	1280698.AUJS01000007_gene1050	253.0	0	N/A	N/A
structural_annotation	UHGV-0046972_6	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_7	phrog_538	217.2	0	minor tail protein	tail
UniRef90	UHGV-0046972_7	UniRef90_UPI001F3E20C1	474.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0046972_7	1280698.AUJS01000007_gene1049	462.0	0	N/A	N/A
Pfam	UHGV-0046972_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0046972_7	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_8	phrog_33	52.0	0.000000000000017	distal tail protein Dit	tail
UniRef90	UHGV-0046972_8	UniRef90_UPI00156E3DDD	522.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0046972_8	1280698.AUJS01000007_gene1048	382.0	0	N/A	N/A
structural_annotation	UHGV-0046972_8	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_9	phrog_6900	260.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0046972_9	UniRef90_A0A174L0T5	816.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0046972_9	1280698.AUJS01000007_gene1047	557.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0046972_9	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046972_9	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_10	phrog_1633	145.1	2.10195e-43	N/A	unknown function
UniRef90	UHGV-0046972_10	UniRef90_UPI0006C2F0F2	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046972_10	1280698.AUJS01000007_gene1046	142.0	2.14959e-42	N/A	N/A
Pfam	UHGV-0046972_10	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0046972_10	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_11	phrog_1526	105.9	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0046972_11	665950.HMPREF1025_02524	89.7	1.89e-22	N/A	N/A
PHROG	UHGV-0046972_12	phrog_117	185.3	0	major tail protein	tail
UniRef90	UHGV-0046972_12	UniRef90_UPI00156E6ACC	307.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0046972_12	1280698.AUJS01000007_gene1044	272.0	0	domain, Protein	N/A
COG	UHGV-0046972_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0046972_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_13	phrog_123	58.4	1.4e-16	tail terminator	connector
eggNOG-mapper	UHGV-0046972_13	1280698.AUJS01000007_gene1043	163.0	0	N/A	N/A
structural_annotation	UHGV-0046972_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_14	phrog_387	42.3	0.0000000000066	neck protein	connector
eggNOG-mapper	UHGV-0046972_14	908337.HMPREF9257_0534	48.9	0.00000111	N/A	N/A
PHROG	UHGV-0046972_15	phrog_501	97.1	1.4e-28	head closure Hc1	connector
eggNOG-mapper	UHGV-0046972_15	1280698.AUJS01000007_gene1041	182.0	0	N/A	N/A
structural_annotation	UHGV-0046972_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_16	phrog_137	57.0	3.3e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-0046972_16	UniRef90_UPI0015704514	184.0	0	Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0046972_16	742742.HMPREF9452_01301	50.4	0.00000456	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0046972_16	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0046972_16	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_18	phrog_10	110.1	2.7e-32	major head protein	head and packaging
UniRef90	UHGV-0046972_18	UniRef90_A0A174L023	576.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0046972_18	205876.Q855V6_9CAUD	300.0	0	peptidase activity	N/A
Pfam	UHGV-0046972_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0046972_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0046972_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_19	phrog_233	85.2	1.5e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0046972_19	UniRef90_A0A3E4GMR3	275.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046972_19	1408304.JAHA01000007_gene1323	102.0	2.35e-26	N/A	N/A
Pfam	UHGV-0046972_19	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0046972_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_20	phrog_1048	173.7	0	N/A	unknown function
UniRef90	UHGV-0046972_20	UniRef90_A0A395V4Z5	295.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046972_20	457412.RSAG_01107	266.0	0	N/A	N/A
Pfam	UHGV-0046972_20	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0046972_20	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0046972_20	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_22	phrog_193	147.3	7.42688e-44	head maturation protease	head and packaging
UniRef90	UHGV-0046972_22	UniRef90_A0A6N8H118	263.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0046972_22	748224.HMPREF9436_01469	282.0	0	N/A	N/A
COG	UHGV-0046972_22	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0046972_22	PF20344	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_23	phrog_104	242.5	0	portal protein	head and packaging
UniRef90	UHGV-0046972_23	UniRef90_A0A174L3Q9	961.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0046972_23	1123263.AUKY01000112_gene2059	579.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0046972_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0046972_23	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_24	phrog_9	168.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0046972_24	UniRef90_UPI001D0087E2	870.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0046972_24	1123263.AUKY01000112_gene2060	696.0	0	phage terminase, large subunit	N/A
COG	UHGV-0046972_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0046972_24	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046972_25	UniRef90_R6GFM0	126.0	3.32e-36	Conserved domain protein	N/A
structural_annotation	UHGV-0046972_25	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_26	phrog_338	62.9	7.2e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046972_26	UniRef90_A0A3E4GMG2	244.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0046972_26	1123263.AUKY01000112_gene2062	154.0	0	N/A	N/A
PHROG	UHGV-0046972_27	phrog_36	73.6	3.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0046972_27	UniRef90_UPI001F14539B	119.0	6.62e-32	N/A	N/A
eggNOG-mapper	UHGV-0046972_27	1235800.C819_02243	107.0	9.06e-28	N/A	N/A
structural_annotation	UHGV-0046972_27	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_28	phrog_6568	62.8	3.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0046972_28	1203606.HMPREF1526_00241	51.2	0.000000277	N/A	N/A
PHROG	UHGV-0046972_29	phrog_15198	63.5	4.1e-18	N/A	unknown function
UniRef90	UHGV-0046972_29	UniRef90_A0A174HIL1	151.0	0	N/A	N/A
Pfam	UHGV-0046972_29	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0046972_30	phrog_8684	102.0	4.9e-30	N/A	unknown function
UniRef90	UHGV-0046972_30	UniRef90_A0A1C5X6R0	361.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-0046972_30	457412.RSAG_01162	177.0	0	YopX protein	N/A
Pfam	UHGV-0046972_30	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0046972_30	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_32	phrog_20593	83.6	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0046972_32	483218.BACPEC_01161	60.8	0.0000000026	N/A	N/A
PHROG	UHGV-0046972_34	phrog_924	47.6	0.0000000000004	N/A	unknown function
UniRef90	UHGV-0046972_34	UniRef90_A0A893WE10	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046972_34	411461.DORFOR_01155	107.0	4.44e-29	N/A	N/A
Pfam	UHGV-0046972_34	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0046972_34	PF04448,NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046972_38	UniRef90_A0A7C6N025	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046972_38	1232452.BAIB02000014_gene2268	204.0	0	N/A	N/A
Pfam	UHGV-0046972_38	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-0046972_38	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_39	phrog_7566	102.5	2.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0046972_39	97139.C824_05985	114.0	2.01e-31	N/A	N/A
KOfam	UHGV-0046972_41	K03497	144.1	1.60028e-42	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0046972_41	phrog_6218	201.9	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046972_41	UniRef90_A0A174HNH0	799.0	0	Probable chromosome-partitioning protein parB	N/A
eggNOG-mapper	UHGV-0046972_41	411461.DORFOR_01144	320.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0046972_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0046972_41	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0046972_41	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0046972_41	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0046972_42	UniRef90_R6TFD0	117.0	5.19e-32	Putative DNA-binding protein	N/A
eggNOG-mapper	UHGV-0046972_42	411470.RUMGNA_02055	115.0	1.1e-32	N/A	N/A
KOfam	UHGV-0046972_43	K03469	57.8	2.7e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0046972_43	phrog_531	61.8	1.4e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046972_43	UniRef90_A0A174L2W3	239.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0046972_43	1235792.C808_03083	95.1	5.4e-23	RNase H	N/A
Pfam	UHGV-0046972_43	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0046972_43	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0046972_43	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0046972_44	33035.JPJF01000138_gene3005	79.0	0.00000000000000103	N/A	N/A
PHROG	UHGV-0046972_45	phrog_3777	81.0	9.8e-24	N/A	unknown function
UniRef90	UHGV-0046972_45	UniRef90_A0A3E4GMR6	230.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046972_45	411460.RUMTOR_02064	116.0	4.86e-32	N/A	N/A
Pfam	UHGV-0046972_45	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0046972_45	PF12957	N/A	N/A	N/A	N/A
KOfam	UHGV-0046972_49	K07741	198.3	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0046972_49	phrog_63	163.5	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0046972_49	UniRef90_A0A1C5N1M2	486.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-0046972_49	658655.HMPREF0988_02592	357.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0046972_49	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0046972_49	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0046972_49	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0046972_49	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_50	phrog_9607	74.7	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0046972_50	1304866.K413DRAFT_4639	79.0	7e-16	N/A	N/A
structural_annotation	UHGV-0046972_50	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
PHROG	UHGV-0046972_52	phrog_14088	54.8	0.000000000000001	N/A	unknown function
UniRef90	UHGV-0046972_52	UniRef90_A0A3R6M7R7	61.6	0.0000000000471	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-0046972_52	1256908.HMPREF0373_00648	56.2	0.00000000109	N/A	N/A
PHROG	UHGV-0046972_54	phrog_20330	80.2	2.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0046972_54	1094508.Tsac_2450	80.5	5.75e-18	N/A	N/A
KOfam	UHGV-0046972_56	K22300	52.0	0.000000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0046972_56	phrog_4	41.6	0.000000000026	transcriptional repressor	transcription regulation
UniRef90	UHGV-0046972_56	UniRef90_A0A3R6IKH4	257.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0046972_56	1280698.AUJS01000007_gene1002	148.0	4.2039e-44	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0046972_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0046972_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0046972_56	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0046972_57	K02342	191.3	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0046972_57	phrog_192	170.1	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046972_57	UniRef90_A0A1C5N213	794.0	0	DNA polymerase III polC-type	N/A
eggNOG-mapper	UHGV-0046972_57	537013.CLOSTMETH_02498	267.0	0	EXOIII	N/A
PADLOC	UHGV-0046972_57	cd06127	134.8	7.6e-40	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0046972_57	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0046972_57	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0046972_57	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0046972_57	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0046972_57	PF00929,PF00533,MF_00157,NF005289,COG0847,COG5275	N/A	N/A	N/A	N/A
KOfam	UHGV-0046972_58	K06400	229.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0046972_58	phrog_95	276.0	0	integrase	integration and excision
UniRef90	UHGV-0046972_58	UniRef90_A0A1C5N2V2	1016.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0046972_58	665950.HMPREF1025_02566	615.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0046972_58	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0046972_58	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0046972_58	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0046972_58	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0046972_58	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A