UHGV-0047739 (vOTU-012799)

Viral Genome: UHGV-0047739

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0047739
vOTU ID	vOTU-012799
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_5433
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.54
Jumbo phage	No

Genome content
Genome length (bp)	36,527
GC content	40.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	93%
Average CDS length (bps)	719.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0047739_1	phrog_581	306.8	0	minor head protein	head and packaging
UniRef90	UHGV-0047739_1	UniRef90_UPI001897AC3D	986.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0047739_1	658655.HMPREF0988_02563	345.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0047739_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0047739_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0047739_1	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_2	phrog_533	323.3	0	portal protein	head and packaging
UniRef90	UHGV-0047739_2	UniRef90_UPI00189C53D6	816.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0047739_2	1304866.K413DRAFT_3035	476.0	0	N/A	N/A
structural_annotation	UHGV-0047739_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0047739_3	K06909	80.8	1.9e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0047739_3	phrog_2	85.9	7.6e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0047739_3	UniRef90_UPI00189AB5B3	861.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0047739_3	1304866.K413DRAFT_3034	608.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0047739_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0047739_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0047739_3	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_4	phrog_309	144.6	2.49431e-43	terminase small subunit	head and packaging
UniRef90	UHGV-0047739_4	UniRef90_UPI001B3C9B19	223.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0047739_4	411470.RUMGNA_02210	147.0	2.8026e-43	transposase activity	N/A
Pfam	UHGV-0047739_4	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0047739_4	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0047739_4	PF07141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0047739_5	TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0047739_6	PF14282,COG5570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0047739_7	NF041288,COG4830	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_8	phrog_25754	53.5	0.0000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0047739_8	97139.C824_00736	60.5	0.000000000208	N/A	N/A
structural_annotation	UHGV-0047739_8	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_9	phrog_98	75.2	9.2e-22	N/A	unknown function
UniRef90	UHGV-0047739_9	UniRef90_UPI00189E57B4	137.0	7.54e-39	YopX family protein	N/A
eggNOG-mapper	UHGV-0047739_9	742767.HMPREF9456_03352	77.8	2.79e-16	YopX protein	N/A
Pfam	UHGV-0047739_9	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0047739_9	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0047739_9	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0047739_12	K06919	102.8	3.4e-30	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0047739_12	phrog_1829	842.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047739_12	UniRef90_A0A2N0ULU7	1444.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0047739_12	1410670.JHXF01000015_gene2274	869.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0047739_12	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0047739_12	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0047739_12	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0047739_12	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0047739_12	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0047739_12	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_13	phrog_378	127.2	1.3e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047739_13	UniRef90_A0A374ND86	279.0	0	N/A	N/A
eggNOG-mapper	UHGV-0047739_13	1410670.JHXF01000015_gene2272	162.0	0	N/A	N/A
Pfam	UHGV-0047739_13	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0047739_13	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_14	phrog_5702	73.8	7.1e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047739_14	UniRef90_A0A374N329	182.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0047739_14	1410670.JHXF01000015_gene2271	154.0	0	VRR_NUC	N/A
Pfam	UHGV-0047739_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0047739_14	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-0047739_15	K19789	321.0	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0047739_15	phrog_16	275.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047739_15	UniRef90_A0A374N1T8	838.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0047739_15	1410670.JHXF01000015_gene2270	567.0	0	helicase	N/A
PADLOC	UHGV-0047739_15	mREase_IV_00005	109.8	1.1e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0047739_15	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0047739_15	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0047739_15	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0047739_15	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_16	phrog_1366	229.0	0	N/A	unknown function
UniRef90	UHGV-0047739_16	UniRef90_R6S946	436.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0047739_16	1410670.JHXF01000015_gene2269	404.0	0	AAA domain	N/A
Pfam	UHGV-0047739_16	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0047739_16	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0047739_16	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_17	phrog_253	92.0	3.5e-28	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047739_17	UniRef90_UPI0019171ADA	183.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0047739_17	632292.Calhy_0748	67.0	0.0000000000215	Siphovirus Gp157	N/A
Pfam	UHGV-0047739_17	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0047739_17	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_18	phrog_15609	91.8	8.4e-27	N/A	unknown function
UniRef90	UHGV-0047739_18	UniRef90_A0A373VML2	160.0	2.28412e-43	N/A	N/A
eggNOG-mapper	UHGV-0047739_18	641112.ACOK01000073_gene2872	117.0	4.05e-28	N/A	N/A
structural_annotation	UHGV-0047739_18	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_19	phrog_8470	216.1	0	N/A	unknown function
UniRef90	UHGV-0047739_19	UniRef90_UPI0018E45158	124.0	4.88e-27	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0047739_19	641112.ACOK01000073_gene2870	107.0	1.81e-22	PcfJ-like protein	N/A
Pfam	UHGV-0047739_19	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0047739_19	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_23	phrog_8	60.5	4.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0047739_23	UniRef90_A0A2N0ULV0	160.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0047739_23	445335.CBN_3090	56.6	0.00000000418	Helix-turn-helix domain	N/A
Pfam	UHGV-0047739_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0047739_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0047739_24	K22299	52.9	0.0000000000000096	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0047739_24	phrog_8	66.9	4.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0047739_24	UniRef90_A0A2N0ULR3	439.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-0047739_24	649747.HMPREF0083_01078	72.0	0.000000000000258	Transcriptional regulator	N/A
Pfam	UHGV-0047739_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0047739_24	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0047739_25	phrog_1914	126.3	1.6e-37	N/A	unknown function
UniRef90	UHGV-0047739_25	UniRef90_A0A2N0ULV1	368.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0047739_25	1160721.RBI_I01604	137.0	2.26e-38	N/A	N/A
Pfam	UHGV-0047739_25	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0047739_25	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0047739_25	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0047739_26	K14059	189.4	0	int; integrase	N/A
PHROG	UHGV-0047739_26	phrog_1	183.3	0	integrase	integration and excision
UniRef90	UHGV-0047739_26	UniRef90_UPI000E4C7350	568.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0047739_26	887325.HMPREF0381_0346	236.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0047739_26	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0047739_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0047739_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0047739_26	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0047739_27	999413.HMPREF1094_00199	83.2	0.00000000000000149	N/A	N/A
PHROG	UHGV-0047739_28	phrog_443	55.8	0.0000000000000014	holin	lysis
UniRef90	UHGV-0047739_28	UniRef90_R6MWB0	124.0	8.65e-36	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0047739_28	1235797.C816_04172	81.3	1.18e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0047739_28	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0047739_28	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_29	phrog_1863	41.1	0.0000000000056	N/A	unknown function
UniRef90	UHGV-0047739_29	UniRef90_UPI001E345E1F	62.4	0.000000000066	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0047739_29	1226322.HMPREF1545_04027	63.9	0.00000000000242	N/A	N/A
KOfam	UHGV-0047739_30	K01447	117.4	1.7e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0047739_30	phrog_833	183.5	0	endolysin	lysis
UniRef90	UHGV-0047739_30	UniRef90_R6MSP5	630.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0047739_30	428125.CLOLEP_01782	185.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0047739_30	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0047739_30	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0047739_30	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0047739_32	PF01664	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_33	phrog_18190	72.6	1.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0047739_33	483218.BACPEC_01143	73.2	0.0000000000546	N/A	N/A
structural_annotation	UHGV-0047739_33	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_34	phrog_1194	61.9	1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0047739_34	397290.C810_05238	97.8	3.18e-24	N/A	N/A
Pfam	UHGV-0047739_34	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0047739_34	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0047739_35	K10866	40.3	0.0000000000079	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	N/A
PHROG	UHGV-0047739_35	phrog_1535	496.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0047739_35	UniRef90_A0A2N0ULX3	1129.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0047739_35	33035.JPJF01000093_gene2243	347.0	0	phage tail tape measure protein	N/A
COG	UHGV-0047739_35	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0047739_35	PF20155,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0047739_36	1408311.JNJM01000003_gene2963	66.2	0.00000000125	N/A	N/A
structural_annotation	UHGV-0047739_36	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_38	phrog_706	129.7	2.1e-38	N/A	unknown function
UniRef90	UHGV-0047739_38	UniRef90_UPI001B3C82AE	256.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0047739_38	1160721.RBI_II00530	193.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0047739_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0047739_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_39	phrog_11299	102.1	5.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0047739_39	1449050.JNLE01000003_gene3883	67.0	0.0000000000042	N/A	N/A
structural_annotation	UHGV-0047739_39	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_40	phrog_3099	144.4	5.70328e-43	N/A	unknown function
eggNOG-mapper	UHGV-0047739_40	1160721.RBI_II00532	232.0	0	N/A	N/A
structural_annotation	UHGV-0047739_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_41	phrog_3266	96.3	2.5e-28	tail completion	connector
eggNOG-mapper	UHGV-0047739_41	1449050.JNLE01000003_gene3885	143.0	4.60046e-42	N/A	N/A
structural_annotation	UHGV-0047739_41	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_42	phrog_556	107.5	5.2e-32	minor head protein	head and packaging
UniRef90	UHGV-0047739_42	UniRef90_UPI00189BC4F9	332.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0047739_42	1449050.JNLE01000003_gene3886	150.0	3.78351e-44	N/A	N/A
Pfam	UHGV-0047739_42	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0047739_42	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_43	phrog_3366	62.8	4.4e-18	N/A	unknown function
Pfam	UHGV-0047739_43	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0047739_43	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_44	phrog_541	77.8	1.3e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-0047739_44	1449050.JNLE01000003_gene3888	82.0	1.64e-18	N/A	N/A
PHROG	UHGV-0047739_45	phrog_422	235.2	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0047739_45	693746.OBV_18090	385.0	0	N/A	N/A
structural_annotation	UHGV-0047739_45	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0047739_46	phrog_194	99.6	4e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0047739_46	UniRef90_UPI0018995066	340.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0047739_46	742765.HMPREF9457_02126	163.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0047739_46	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0047739_46	PF06810	N/A	N/A	N/A	N/A