UHGV-0048573 (vOTU-123561)

Viral Genome: UHGV-0048573

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0048573
vOTU ID	vOTU-123561
Representative Genome?	Yes
Source	GPD
Original genome ID	ivig_3648
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.89
Jumbo phage	No

Genome content
Genome length (bp)	26,742
GC content	30.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	31
CDS density	89%
Average CDS length (bps)	766.74
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0048573_2	931276.Cspa_c26680	92.4	3.41e-22	N/A	N/A
PHROG	UHGV-0048573_3	phrog_36	75.1	9.1e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0048573_3	UniRef90_UPI0018A8ECDF	186.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0048573_3	1391647.AVSV01000022_gene2550	142.0	1.56e-40	N/A	N/A
NCBIFam	UHGV-0048573_3	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0048573_3	PF08281,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_4	phrog_10934	121.1	3.5e-36	N/A	unknown function
UniRef90	UHGV-0048573_4	UniRef90_A0A174QNV3	119.0	2.5e-32	Gp2	N/A
eggNOG-mapper	UHGV-0048573_4	195103.CPF_1567	109.0	1.07e-29	N/A	N/A
PHROG	UHGV-0048573_5	phrog_15411	328.8	0	N/A	unknown function
UniRef90	UHGV-0048573_5	UniRef90_UPI0006BF84C0	637.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048573_5	1499684.CCNP01000020_gene2275	348.0	0	N/A	N/A
Pfam	UHGV-0048573_5	PF13271	N/A	N/A	N/A	DUF4062
COG	UHGV-0048573_5	COG2865	N/A	N/A	Predicted transcriptional regulator, contains HTH domain	N/A
structural_annotation	UHGV-0048573_5	PF13271,PF14277,MF_00526,NF006747,NF006931,COG4271,COG3373	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048573_6	1280689.AUJC01000003_gene960	56.6	0.00000000163	N/A	N/A
structural_annotation	UHGV-0048573_6	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0048573_7	K07474	116.7	4e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0048573_7	phrog_51	130.9	6.9e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0048573_7	UniRef90_UPI0006C08353	249.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0048573_7	1280689.AUJC01000003_gene961	243.0	0	Terminase small subunit	N/A
Pfam	UHGV-0048573_7	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0048573_7	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0048573_7	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0048573_8	K06909	361.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0048573_8	phrog_3717	164.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0048573_8	UniRef90_A0A1B8RSV7	855.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0048573_8	1280689.AUJC01000003_gene962	857.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0048573_8	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0048573_8	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0048573_8	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0048573_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0048573_8	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_9	phrog_64	404.8	0	portal protein	head and packaging
UniRef90	UHGV-0048573_9	UniRef90_UPI000EA0DF01	853.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0048573_9	1280689.AUJC01000003_gene963	845.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0048573_9	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0048573_9	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0048573_9	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_10	phrog_115	351.0	0	minor head protein	head and packaging
UniRef90	UHGV-0048573_10	UniRef90_UPI001A9A821E	971.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0048573_10	1280689.AUJC01000003_gene964	970.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0048573_10	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0048573_10	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0048573_10	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048573_10	PF15542,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048573_11	1280689.AUJC01000003_gene965	165.0	0	N/A	N/A
PHROG	UHGV-0048573_12	phrog_172	166.2	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0048573_12	UniRef90_UPI0012E1D36F	343.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048573_12	1280689.AUJC01000003_gene966	323.0	0	N/A	N/A
Pfam	UHGV-0048573_12	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0048573_12	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_13	phrog_283	292.1	0	major head protein	head and packaging
UniRef90	UHGV-0048573_13	UniRef90_A0A1I2NUB2	690.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0048573_13	1499683.CCFF01000014_gene3908	694.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0048573_13	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0048573_13	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_14	phrog_132	84.5	9.5e-25	head-tail adaptor	connector
UniRef90	UHGV-0048573_14	UniRef90_UPI000829FFA7	178.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0048573_14	1280689.AUJC01000003_gene968	198.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0048573_14	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0048573_14	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_15	phrog_2168	130.5	5.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-0048573_15	1280689.AUJC01000003_gene969	205.0	0	N/A	N/A
structural_annotation	UHGV-0048573_15	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_16	phrog_5	110.1	2.2e-32	tail completion or Neck1 protein	connector
UniRef90	UHGV-0048573_16	UniRef90_UPI001B3C7E28	274.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0048573_16	1280689.AUJC01000003_gene970	319.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0048573_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0048573_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0048573_16	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_17	phrog_78	60.2	4.1e-17	tail terminator	connector
eggNOG-mapper	UHGV-0048573_17	1280689.AUJC01000003_gene971	229.0	0	N/A	N/A
structural_annotation	UHGV-0048573_17	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_18	phrog_158	78.7	1.1e-22	major tail protein	tail
UniRef90	UHGV-0048573_18	UniRef90_UPI0006C6C404	283.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0048573_18	1280689.AUJC01000003_gene972	239.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0048573_18	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0048573_18	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_19	phrog_2546	80.2	4.1e-23	N/A	unknown function
UniRef90	UHGV-0048573_19	UniRef90_UPI0006C261E9	328.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0048573_19	1280689.AUJC01000003_gene973	113.0	5.73e-29	N/A	N/A
Pfam	UHGV-0048573_19	PF05154	N/A	N/A	TM2 domain	TM2
structural_annotation	UHGV-0048573_19	PF05154,PF02701,COG3478,COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_20	phrog_183	78.8	7.8e-23	tail chaperone protein	tail
UniRef90	UHGV-0048573_20	UniRef90_UPI0006C0E497	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048573_20	1280689.AUJC01000003_gene974	221.0	0	N/A	N/A
Pfam	UHGV-0048573_20	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0048573_20	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_21	phrog_2066	48.9	0.000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0048573_21	1280689.AUJC01000003_gene975	156.0	0	N/A	N/A
PHROG	UHGV-0048573_22	phrog_31409	392.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0048573_22	UniRef90_A0A383RGU3	384.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0048573_22	1280689.AUJC01000003_gene976	717.0	0	phage tail tape measure protein	N/A
COG	UHGV-0048573_22	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0048573_22	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_23	phrog_1194	126.6	1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0048573_23	1280689.AUJC01000003_gene977	228.0	0	N/A	N/A
Pfam	UHGV-0048573_23	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0048573_23	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_24	phrog_6616	76.9	1.9e-22	tail protein	tail
eggNOG-mapper	UHGV-0048573_24	1280689.AUJC01000003_gene978	1616.0	0	Phage minor structural protein	N/A
COG	UHGV-0048573_24	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0048573_24	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_25	phrog_19567	72.1	5.3e-21	tail fiber protein	tail
eggNOG-mapper	UHGV-0048573_25	1280689.AUJC01000003_gene979	1666.0	0	N/A	N/A
NCBIFam	UHGV-0048573_27	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0048573_28	phrog_199	107.5	1.3e-31	holin	lysis
UniRef90	UHGV-0048573_28	UniRef90_A0A1C6KXX7	219.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0048573_28	1280689.AUJC01000003_gene982	263.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0048573_28	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0048573_28	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0048573_28	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0048573_28	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0048573_29	K01448	111.5	1e-32	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0048573_29	phrog_435	177.4	0	endolysin	lysis
UniRef90	UHGV-0048573_29	UniRef90_UPI0006C0CFD4	544.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0048573_29	1280689.AUJC01000011_gene1538	515.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0048573_29	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0048573_29	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0048573_29	PF01520,PF05036,MF_02022,MF_00562,TIGR02883,COG0860,COG3147	N/A	N/A	N/A	N/A
PHROG	UHGV-0048573_30	phrog_2277	79.9	2e-23	N/A	unknown function
UniRef90	UHGV-0048573_30	UniRef90_A0A1L3NHL2	73.2	7.13e-16	Putative nicotinate phosphoribosyltransferase	N/A
eggNOG-mapper	UHGV-0048573_30	1280689.AUJC01000003_gene984	120.0	1.97e-35	N/A	N/A
UniRef90	UHGV-0048573_31	UniRef90_A0A1B8RTA2	453.0	0	Carb-bd_dom_fam9 domain-containing protein	N/A
eggNOG-mapper	UHGV-0048573_31	1280689.AUJC01000003_gene985	453.0	0	Carbohydrate-binding family 9	N/A
Pfam	UHGV-0048573_31	PF16011	N/A	N/A	Carbohydrate-binding family 9	CBM9_2
COG	UHGV-0048573_31	COG2199	N/A	N/A	GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants	N/A