UHGV-0048654 (vOTU-151816)

Viral Genome: UHGV-0048654

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0048654
vOTU ID	vOTU-151816
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_28358
Associated BioSample	SAMEA2042226
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.36 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.35
Jumbo phage	No

Genome content
Genome length (bp)	28,059
GC content	41.93%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	94%
Average CDS length (bps)	657.83
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0048654_1	1123288.SOV_6c00720	63.9	0.00000000000013	N/A	N/A
PHROG	UHGV-0048654_3	phrog_87	46.7	0.00000000000037	metallo-protease	other
UniRef90	UHGV-0048654_3	UniRef90_UPI00191FA2AD	261.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0048654_3	997296.PB1_16109	138.0	2.27e-39	N/A	N/A
Pfam	UHGV-0048654_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0048654_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0048654_3	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0048654_4	K22299	52.3	0.000000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0048654_4	UniRef90_A0A6L6L8J3	140.0	4.83994e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0048654_4	59374.Fisuc_2499	91.3	3.24e-22	sequence-specific DNA binding	N/A
Pfam	UHGV-0048654_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0048654_4	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048654_4	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
KOfam	UHGV-0048654_5	K01447	96.1	5.5e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0048654_5	phrog_1493	190.8	0	endolysin	lysis
UniRef90	UHGV-0048654_5	UniRef90_UPI00041018D3	456.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0048654_5	1280698.AUJS01000007_gene1059	456.0	0	Ami_2	N/A
Pfam	UHGV-0048654_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0048654_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0048654_5	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0048654_5	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_6	phrog_1129	76.2	3e-22	holin	lysis
UniRef90	UHGV-0048654_6	UniRef90_UPI001F15FE24	150.0	1.4013e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0048654_6	411461.DORFOR_00721	172.0	0	N/A	N/A
Pfam	UHGV-0048654_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0048654_6	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_7	phrog_1009	43.8	0.0000000000042	N/A	unknown function
UniRef90	UHGV-0048654_7	UniRef90_A0A173RD60	180.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0048654_7	742765.HMPREF9457_03364	169.0	0	N/A	N/A
UniRef90	UHGV-0048654_9	UniRef90_UPI00189B9B17	515.0	0	pyocin knob domain-containing protein	N/A
eggNOG-mapper	UHGV-0048654_9	411462.DORLON_00771	188.0	0	N/A	N/A
structural_annotation	UHGV-0048654_9	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_10	phrog_19695	65.7	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0048654_10	411462.DORLON_00772	87.0	6.69e-21	N/A	N/A
structural_annotation	UHGV-0048654_10	PF19714	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_11	phrog_9478	293.1	0	minor tail protein	tail
UniRef90	UHGV-0048654_11	UniRef90_UPI0018A94FF7	1701.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0048654_11	543734.LCABL_13420	367.0	0	cellulase activity	N/A
Pfam	UHGV-0048654_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0048654_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0048654_11	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0048654_12	phrog_202	307.5	0	distal tail protein Dit	tail
UniRef90	UHGV-0048654_12	UniRef90_UPI001D093A04	1097.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0048654_12	1235796.C815_00909	408.0	0	Phage tail protein	N/A
Pfam	UHGV-0048654_12	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0048654_12	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0048654_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0048654_12	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_13	phrog_1204	111.9	0	tail protein	tail
UniRef90	UHGV-0048654_13	UniRef90_UPI001896B0C6	1365.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0048654_13	1232453.BAIF02000011_gene3367	753.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0048654_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0048654_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0048654_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0048654_13	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_14	phrog_441	57.2	3.2e-16	tail assembly chaperone	tail
UniRef90	UHGV-0048654_14	UniRef90_F0YWR6	62.8	0.0000000000722	N/A	N/A
eggNOG-mapper	UHGV-0048654_14	1232453.BAIF02000011_gene3366	76.6	4.37e-17	N/A	N/A
PHROG	UHGV-0048654_15	phrog_183	69.3	6.4e-20	tail chaperone protein	tail
UniRef90	UHGV-0048654_15	UniRef90_UPI001D067B55	236.0	0	tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0048654_15	476272.RUMHYD_02861	129.0	4.28e-37	Phage tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0048654_15	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-0048654_15	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_16	phrog_238	177.6	0	major tail protein	tail
UniRef90	UHGV-0048654_16	UniRef90_A0A173YN47	314.0	0	Phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0048654_16	1235798.C817_03471	218.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0048654_16	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0048654_16	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0048654_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_17	phrog_176	79.9	3.2e-23	tail terminator	connector
UniRef90	UHGV-0048654_17	UniRef90_UPI001D04E689	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048654_17	476272.RUMHYD_02859	160.0	0	N/A	N/A
structural_annotation	UHGV-0048654_17	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_18	phrog_5	88.1	1.4e-25	tail completion or Neck1 protein	connector
UniRef90	UHGV-0048654_18	UniRef90_A0A173ZF18	207.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0048654_18	476272.RUMHYD_02858	134.0	1.41e-39	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0048654_18	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0048654_18	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0048654_18	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_19	phrog_348	70.1	3.4e-20	minor head protein	head and packaging
eggNOG-mapper	UHGV-0048654_19	476272.RUMHYD_02857	121.0	1.46e-34	N/A	N/A
structural_annotation	UHGV-0048654_19	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_20	phrog_132	80.3	2e-23	head-tail adaptor	connector
UniRef90	UHGV-0048654_20	UniRef90_A0A173ZES1	206.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0048654_20	476272.RUMHYD_02856	135.0	4.33e-40	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0048654_20	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0048654_20	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_21	phrog_390	77.8	1.3e-22	Arc-like repressor	transcription regulation
UniRef90	UHGV-0048654_21	UniRef90_UPI00189B7272	141.0	4.18988e-42	Rho termination protein	N/A
PHROG	UHGV-0048654_22	phrog_544	134.9	4.2e-40	major head protein	head and packaging
UniRef90	UHGV-0048654_22	UniRef90_A0A173ZE35	779.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0048654_22	1232453.BAIF02000011_gene3359	617.0	0	N/A	N/A
Pfam	UHGV-0048654_22	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0048654_22	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_23	phrog_172	149.9	1.54143e-44	head scaffolding protein	head and packaging
UniRef90	UHGV-0048654_23	UniRef90_UPI001D0541EB	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048654_23	1232453.BAIF02000011_gene3358	137.0	2.96e-37	N/A	N/A
Pfam	UHGV-0048654_23	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0048654_23	PF14265	N/A	N/A	N/A	N/A
KOfam	UHGV-0048654_24	K07584	78.8	8.6e-23	N/A	N/A
PHROG	UHGV-0048654_24	phrog_4478	102.8	1.7e-30	peptidase	other
UniRef90	UHGV-0048654_24	UniRef90_UPI00156DEF22	176.0	0	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0048654_24	1235798.C817_03478	142.0	3.0268e-43	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0048654_24	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0048654_24	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048654_24	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_25	phrog_1233	82.8	5.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0048654_25	1232453.BAIF02000011_gene3355	148.0	1.12104e-44	N/A	N/A
structural_annotation	UHGV-0048654_26	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_27	phrog_115	313.3	0	minor head protein	head and packaging
UniRef90	UHGV-0048654_27	UniRef90_UPI00111156C2	1425.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0048654_27	476272.RUMHYD_02847	430.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0048654_27	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0048654_27	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0048654_27	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_28	phrog_64	387.6	0	portal protein	head and packaging
UniRef90	UHGV-0048654_28	UniRef90_UPI001A9B67CD	890.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0048654_28	1232453.BAIF02000011_gene3353	652.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0048654_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0048654_28	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0048654_28	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0048654_29	K06909	298.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0048654_29	phrog_3717	255.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0048654_29	UniRef90_UPI001897BF4F	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0048654_29	476272.RUMHYD_02845	557.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0048654_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0048654_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0048654_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0048654_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0048654_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0048654_30	K07474	102.8	7.2e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0048654_30	phrog_51	125.8	3.2e-37	terminase small subunit	head and packaging
UniRef90	UHGV-0048654_30	UniRef90_UPI001111365D	243.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0048654_30	608534.GCWU000341_02298	176.0	0	Terminase small subunit	N/A
Pfam	UHGV-0048654_30	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0048654_30	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0048654_30	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0048654_31	UniRef90_UPI00111142DD	510.0	0	toll/interleukin-1 receptor domain-containing protein	N/A
eggNOG-mapper	UHGV-0048654_31	1408473.JHXO01000001_gene1973	245.0	0	TIR domain	N/A
Pfam	UHGV-0048654_31	PF13676	N/A	N/A	TIR domain	TIR_2
COG	UHGV-0048654_31	COG4916	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048654_31	PF13676,PF06483,NF040588,COG4916	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_32	phrog_36	53.2	0.0000000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-0048654_32	UniRef90_R6ZAS5	149.0	5.45105e-43	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0048654_32	742765.HMPREF9457_02116	167.0	0	N/A	N/A
structural_annotation	UHGV-0048654_32	PF02996	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048654_34	PF10842,MF_00436,NF037951,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_36	phrog_15198	41.3	0.000000000024	N/A	unknown function
UniRef90	UHGV-0048654_36	UniRef90_UPI001EE0C335	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048654_36	411462.DORLON_00804	105.0	5.64e-28	N/A	N/A
Pfam	UHGV-0048654_36	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0048654_36	PF04448,NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048654_37	411462.DORLON_00805	125.0	8.94e-37	N/A	N/A
KOfam	UHGV-0048654_38	K01160	47.8	0.00000000000039	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0048654_38	phrog_140	92.5	5.3e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0048654_38	UniRef90_A0A173ZCZ5	265.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0048654_38	411462.DORLON_00806	254.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0048654_38	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0048654_38	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0048654_38	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0048654_39	phrog_16687	102.8	1.4e-30	N/A	unknown function
KOfam	UHGV-0048654_40	K07505	216.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0048654_40	phrog_2597	445.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0048654_40	UniRef90_A0A7X5IGW1	352.0	0	DNA primase (Fragment)	N/A
eggNOG-mapper	UHGV-0048654_40	411462.DORLON_00808	685.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0048654_40	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0048654_40	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0048654_40	PF03796,PF16007,TIGR03880,COG3598	N/A	N/A	N/A	N/A