UHGV-0049036 (vOTU-085672)

Viral Genome: UHGV-0049036

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0049036
vOTU ID	vOTU-085672
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_22161
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9741
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.78
Jumbo phage	No

Genome content
Genome length (bp)	45,782
GC content	44.92%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	91%
Average CDS length (bps)	639.32
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0049036_1	K07263	57.4	1.7e-16	pqqL; zinc protease [EC:3.4.24.-]	N/A
UniRef90	UHGV-0049036_1	UniRef90_A0A3C2DTC7	782.0	0	Peptidase_M16_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0049036_1	537013.CLOSTMETH_02826	271.0	0	Peptidase M16 inactive domain protein	N/A
Pfam	UHGV-0049036_1	PF05193	N/A	N/A	Peptidase M16 inactive domain	Peptidase_M16_C
COG	UHGV-0049036_1	COG0612	N/A	N/A	Predicted Zn-dependent peptidase, M16 family	N/A
KOfam	UHGV-0049036_2	K22227	144.5	6.60012e-43	ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]	N/A
PHROG	UHGV-0049036_2	phrog_1802	78.6	1.1e-22	radical SAM domain-containing protein	other
UniRef90	UHGV-0049036_2	UniRef90_R5MIN5	1021.0	0	Radical SAM domain protein	N/A
eggNOG-mapper	UHGV-0049036_2	1280694.AUJQ01000007_gene940	536.0	0	Iron-sulfur cluster-binding domain	N/A
Pfam	UHGV-0049036_2	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0049036_2	COG0535	N/A	N/A	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	N/A
KOfam	UHGV-0049036_3	K06400	285.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0049036_3	phrog_95	294.6	0	integrase	integration and excision
UniRef90	UHGV-0049036_3	UniRef90_A0A1C5MTR3	728.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0049036_3	445972.ANACOL_03320	367.0	0	N/A	N/A
Pfam	UHGV-0049036_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0049036_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0049036_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0049036_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0049036_3	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049036_4	UniRef90_A0A1C6L0N4	150.0	8.40779e-45	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0049036_4	PF08667,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049036_5	PF00157	N/A	N/A	N/A	N/A
KOfam	UHGV-0049036_6	K08309	52.3	0.000000000000011	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0049036_6	phrog_19349	147.0	5.32493e-44	N/A	unknown function
UniRef90	UHGV-0049036_6	UniRef90_D7GXC0	372.0	0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	N/A
eggNOG-mapper	UHGV-0049036_6	742740.HMPREF9474_02375	115.0	3.52e-29	lytic transglycosylase activity	N/A
Pfam	UHGV-0049036_6	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0049036_6	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0049036_6	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
KOfam	UHGV-0049036_9	K03552	44.0	0.0000000000036	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	N/A
UniRef90	UHGV-0049036_9	UniRef90_D7GXC2	248.0	0	Archaeal holliday junction resolvase (Hjc)	N/A
eggNOG-mapper	UHGV-0049036_9	1449050.JNLE01000003_gene3909	121.0	2.05e-33	Recombination protein U	N/A
Pfam	UHGV-0049036_9	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
structural_annotation	UHGV-0049036_9	PF03838,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_10	phrog_799	182.6	0	DNA methyltransferase	other
UniRef90	UHGV-0049036_10	UniRef90_A0A1C0AG94	283.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0049036_10	1123263.AUKY01000096_gene1823	246.0	0	DNA restriction-modification system	N/A
COG	UHGV-0049036_10	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-0049036_10	PF19587,MF_01872,NF011489,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0049036_11	K18959	199.2	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0049036_11	phrog_16	188.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_11	UniRef90_D7GXC3	787.0	0	DNA or RNA helicases of superfamily II	N/A
eggNOG-mapper	UHGV-0049036_11	1449050.JNLE01000003_gene3908	512.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0049036_11	mREase_IV_00005	59.1	5.7e-17	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0049036_11	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0049036_11	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0049036_11	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0049036_11	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_12	phrog_3377	191.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_12	UniRef90_UPI0013002188	155.0	2.8026e-45	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0049036_12	397290.C810_05173	144.0	5.21998e-41	N/A	N/A
PHROG	UHGV-0049036_13	phrog_1252	475.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_13	UniRef90_D7GXC4	1578.0	0	DNA polymerase elongation subunit (Family B)	N/A
eggNOG-mapper	UHGV-0049036_13	1121866.AUGK01000003_gene1403	667.0	0	DNA replication proofreading	N/A
Pfam	UHGV-0049036_13	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0049036_13	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0049036_13	PF04404,PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_14	phrog_434	98.1	9.9e-29	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_14	UniRef90_D7GXC5	680.0	0	Phage-related protein, predicted endonuclease	N/A
eggNOG-mapper	UHGV-0049036_14	1219626.HMPREF1639_07320	350.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0049036_14	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0049036_14	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0049036_14	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049036_17	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_18	phrog_236	92.7	8.1e-27	nucleotide kinase	other
UniRef90	UHGV-0049036_18	UniRef90_UPI001D04CE99	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049036_18	1123263.AUKY01000015_gene1590	82.8	5e-20	N/A	N/A
Pfam	UHGV-0049036_18	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0049036_18	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-0049036_19	K03698	55.1	0.0000000000000014	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0049036_19	phrog_5889	107.1	1.3e-31	N/A	unknown function
UniRef90	UHGV-0049036_19	UniRef90_A0A1C5MUY3	364.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-0049036_19	1219626.HMPREF1639_07345	171.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0049036_19	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0049036_19	PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_20	phrog_6721	252.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0049036_20	665956.HMPREF1032_00655	243.0	0	N/A	N/A
structural_annotation	UHGV-0049036_20	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049036_23	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_24	phrog_1829	140.7	7.90052e-42	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_24	UniRef90_A0A1C0AE21	434.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0049036_24	1121866.AUGK01000003_gene1409	191.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-0049036_24	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0049036_24	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-0049036_24	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_25	phrog_21980	63.0	3e-18	N/A	unknown function
UniRef90	UHGV-0049036_25	UniRef90_D7GNU5	320.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049036_25	742740.HMPREF9474_02315	71.2	0.00000000000241	N/A	N/A
Pfam	UHGV-0049036_25	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0049036_25	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049036_26	428125.CLOLEP_01816	58.2	0.00000000123	COG NOG12663 non supervised orthologous group	N/A
PHROG	UHGV-0049036_27	phrog_1156	307.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_27	UniRef90_D7GNU9	971.0	0	Phage/plasmid primase, P4 family, C-terminal domain	N/A
eggNOG-mapper	UHGV-0049036_27	649747.HMPREF0083_00553	311.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0049036_27	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0049036_27	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0049036_27	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0049036_27	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0049036_27	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0049036_27	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
KOfam	UHGV-0049036_28	K14415	328.7	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-0049036_28	phrog_1075	417.6	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_28	UniRef90_A0A3D2X8T0	566.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-0049036_28	397290.C810_01387	540.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-0049036_28	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-0049036_28	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-0049036_28	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_33	phrog_8684	133.4	1.40004e-41	N/A	unknown function
UniRef90	UHGV-0049036_33	UniRef90_A0A388TEC3	94.4	3.84e-22	Protein YopX	N/A
eggNOG-mapper	UHGV-0049036_33	742767.HMPREF9456_02048	88.2	1.21e-20	YopX protein	N/A
Pfam	UHGV-0049036_33	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0049036_33	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0049036_33	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049036_36	UniRef90_UPI001C012D23	120.0	1.68e-30	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0049036_36	536233.CLO_1560	53.1	0.00000253	DNA-packaging protein gp3	N/A
PHROG	UHGV-0049036_38	phrog_4264	47.7	0.00000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0049036_41	1354300.AUQY01000005_gene215	102.0	1.4e-27	N/A	N/A
structural_annotation	UHGV-0049036_44	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0049036_46	K14060	131.4	8.4e-39	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0049036_46	phrog_125	161.4	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049036_46	UniRef90_A0A3D0LYX8	214.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0049036_46	641107.CDLVIII_3188	204.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0049036_46	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0049036_46	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0049036_46	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049036_47	UniRef90_D7GNV4	119.0	6.38e-34	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0049036_47	1050201.KB913034_gene200	101.0	1.77e-27	N/A	N/A
structural_annotation	UHGV-0049036_47	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049036_49	697329.Rumal_3466	65.1	0.0000000000189	resolvase	N/A
Pfam	UHGV-0049036_49	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0049036_49	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0049036_50	PF19190,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_51	phrog_38	207.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0049036_51	UniRef90_A0A810QA10	551.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0049036_51	1298920.KI911353_gene2682	504.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0049036_51	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0049036_51	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049036_51	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_52	phrog_64	242.2	0	portal protein	head and packaging
UniRef90	UHGV-0049036_52	UniRef90_A0A1C5MXM2	898.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0049036_52	1121866.AUGK01000003_gene1429	432.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0049036_52	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0049036_52	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_54	phrog_544	83.3	2.5e-24	major head protein	head and packaging
UniRef90	UHGV-0049036_54	UniRef90_A0A099YE35	60.5	0.000000714	Major head protein	N/A
eggNOG-mapper	UHGV-0049036_54	428127.EUBDOL_01555	255.0	0	N/A	N/A
structural_annotation	UHGV-0049036_54	PF06673,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049036_55	UniRef90_D7GNV9	205.0	0	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-0049036_55	1298920.KI911353_gene2658	56.6	0.00000000585	N/A	N/A
Pfam	UHGV-0049036_55	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0049036_55	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049036_56	1121866.AUGK01000003_gene1432	94.4	6.35e-23	N/A	N/A
UniRef90	UHGV-0049036_57	UniRef90_UPI001BBD4500	65.5	0.000000000357	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0049036_57	1298920.KI911353_gene2654	62.0	0.00000000145	N/A	N/A
PHROG	UHGV-0049036_58	phrog_78	41.4	0.000000000021	tail terminator	connector
eggNOG-mapper	UHGV-0049036_58	1121333.JMLH01000047_gene1014	56.2	0.0000000438	N/A	N/A
structural_annotation	UHGV-0049036_58	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_59	phrog_158	59.5	7.3e-17	major tail protein	tail
UniRef90	UHGV-0049036_59	UniRef90_D7GNW1	266.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0049036_59	1232453.BAIF02000058_gene1634	100.0	2.93e-25	N/A	N/A
Pfam	UHGV-0049036_59	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0049036_59	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049036_60	UniRef90_A0A1C0ADY7	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049036_60	1211844.CBLM010000023_gene988	91.3	1.86e-22	N/A	N/A
Pfam	UHGV-0049036_60	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0049036_60	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049036_61	1121333.JMLH01000047_gene1011	85.5	2.78e-19	N/A	N/A
PHROG	UHGV-0049036_62	phrog_1535	207.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0049036_62	UniRef90_A0A1C6L0H4	1135.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0049036_62	1121866.AUGK01000003_gene1437	385.0	0	phage tail tape measure protein	N/A
COG	UHGV-0049036_62	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0049036_63	phrog_1194	105.9	2.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0049036_63	1400520.LFAB_05290	82.8	8.36e-19	N/A	N/A
Pfam	UHGV-0049036_63	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0049036_63	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0049036_64	phrog_6616	271.2	0	tail protein	tail
eggNOG-mapper	UHGV-0049036_64	445971.ANASTE_00088	157.0	2.14e-37	N/A	N/A
structural_annotation	UHGV-0049036_64	PF05113,PF18957,NF033848,NF038186,COG4379,COG5513	N/A	N/A	N/A	N/A
Pfam	UHGV-0049036_65	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74