UHGV-0049382 (vOTU-070772)

Viral Genome: UHGV-0049382

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0049382
vOTU ID	vOTU-070772
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_23747
Associated BioSample	SAMEA2042406
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.98 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9727
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.08
Jumbo phage	No

Genome content
Genome length (bp)	42,194
GC content	45.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	93%
Average CDS length (bps)	606.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0049382_1	K06400	349.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0049382_1	phrog_95	354.3	0	integrase	integration and excision
UniRef90	UHGV-0049382_1	UniRef90_R6N1X8	1013.0	0	DNA integration/recombination protein	N/A
eggNOG-mapper	UHGV-0049382_1	445972.ANACOL_03320	404.0	0	N/A	N/A
Pfam	UHGV-0049382_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0049382_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0049382_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0049382_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0049382_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049382_2	UniRef90_A0A1C6L0N4	125.0	1.36e-34	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0049382_2	PF08667,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0049382_3	K01356	144.1	1.60028e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0049382_3	phrog_4	123.5	2.2e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0049382_3	UniRef90_R6P523	413.0	0	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	N/A
eggNOG-mapper	UHGV-0049382_3	1121423.JONT01000002_gene2372	194.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0049382_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0049382_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0049382_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0049382_3	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049382_4	UniRef90_R6MZ46	136.0	1.12999e-40	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0049382_4	1163671.JAGI01000002_gene3923	80.1	3.47e-19	N/A	N/A
Pfam	UHGV-0049382_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0049382_4	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0049382_5	K08309	53.4	0.0000000000000056	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0049382_5	phrog_19349	167.2	0	N/A	unknown function
UniRef90	UHGV-0049382_5	UniRef90_R6N9M0	426.0	0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	N/A
eggNOG-mapper	UHGV-0049382_5	742740.HMPREF9474_02375	129.0	1.44e-34	lytic transglycosylase activity	N/A
Pfam	UHGV-0049382_5	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0049382_5	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0049382_5	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049382_7	UniRef90_R6NFS2	291.0	0	Archaeal holliday junction resolvase (Hjc)	N/A
eggNOG-mapper	UHGV-0049382_7	1232453.BAIF02000010_gene3342	115.0	4.85e-31	Recombination protein U	N/A
structural_annotation	UHGV-0049382_7	PF03838,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0049382_8	K18959	202.1	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0049382_8	phrog_16	187.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049382_8	UniRef90_R6P528	930.0	0	DNA or RNA helicases of superfamily II	N/A
eggNOG-mapper	UHGV-0049382_8	1232453.BAIF02000010_gene3343	500.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0049382_8	mREase_IV_00005	46.5	0.00000000000034	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0049382_8	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0049382_8	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0049382_8	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0049382_8	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_9	phrog_1384	133.0	2e-39	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0049382_9	1235797.C816_01664	184.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0049382_9	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_10	phrog_1252	435.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049382_10	UniRef90_R6MZ51	1625.0	0	DNA polymerase elongation subunit (Family B)	N/A
eggNOG-mapper	UHGV-0049382_10	1121866.AUGK01000003_gene1403	552.0	0	DNA replication proofreading	N/A
Pfam	UHGV-0049382_10	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0049382_10	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0049382_10	PF04404,PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_11	phrog_434	104.5	1.2e-30	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049382_11	UniRef90_R6N9M4	687.0	0	Phage-related protein predicted endonuclease	N/A
eggNOG-mapper	UHGV-0049382_11	1219626.HMPREF1639_07320	349.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0049382_11	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0049382_11	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0049382_11	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0049382_13	cluster_73853	32.3	0.00000938	NA	N/A
structural_annotation	UHGV-0049382_14	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_15	phrog_801	83.3	4.3e-24	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0049382_15	UniRef90_R6MZ55	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049382_15	1297570.MESS4_510075	55.5	0.0000000695	N/A	N/A
Pfam	UHGV-0049382_15	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0049382_15	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-0049382_16	K03698	43.1	0.000000000006	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0049382_16	phrog_28876	101.0	1.1e-29	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0049382_16	UniRef90_A0A1C6EYG8	277.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-0049382_16	1235800.C819_00499	165.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0049382_16	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0049382_16	MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049382_19	PF06530,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049382_20	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_21	phrog_599	43.5	0.0000000000069	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0049382_21	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0049382_21	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0049382_21	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0049382_21	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_28	phrog_954	195.2	0	DNA methyltransferase	other
UniRef90	UHGV-0049382_28	UniRef90_UPI001C3EDFA5	283.0	0	class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0049382_28	679201.HMPREF9334_00469	241.0	0	methyltransferase	N/A
PADLOC	UHGV-0049382_28	MTase_II_00074	189.3	0	Type II methyltransferase	RM
COG	UHGV-0049382_28	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0049382_28	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_30	phrog_1829	150.4	9.80909e-45	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049382_30	UniRef90_R6P545	577.0	0	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	N/A
eggNOG-mapper	UHGV-0049382_30	1121866.AUGK01000003_gene1409	199.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-0049382_30	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0049382_30	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-0049382_30	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
KOfam	UHGV-0049382_31	K03465	212.6	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0049382_31	phrog_85	136.9	8.69996e-41	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049382_31	UniRef90_R6MZ76	432.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0049382_31	665956.HMPREF1032_03153	209.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0049382_31	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0049382_31	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0049382_31	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-0049382_31	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-0049382_31	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_32	phrog_1233	83.1	3.6e-24	N/A	unknown function
UniRef90	UHGV-0049382_32	UniRef90_UPI001D077F84	88.2	8.7e-21	basic secretory family protein	N/A
eggNOG-mapper	UHGV-0049382_32	33035.JPJF01000106_gene3130	85.9	2.76e-20	N/A	N/A
PHROG	UHGV-0049382_34	phrog_1156	298.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049382_34	UniRef90_R6NFT7	1030.0	0	Phage/plasmid primase P4 family C-terminal domain	N/A
eggNOG-mapper	UHGV-0049382_34	649747.HMPREF0083_00553	300.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0049382_34	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0049382_34	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0049382_34	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0049382_34	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0049382_34	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0049382_34	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_35	phrog_7880	111.4	4.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-0049382_35	330084.JNYZ01000003_gene2313	58.5	0.00000000469	N/A	N/A
PHROG	UHGV-0049382_41	phrog_4264	44.5	0.0000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0049382_44	1354300.AUQY01000005_gene215	108.0	4.93e-30	N/A	N/A
UniRef90	UHGV-0049382_46	UniRef90_R6P559	141.0	8.82818e-43	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0049382_46	748727.CLJU_c03300	108.0	2.21e-30	N/A	N/A
Pfam	UHGV-0049382_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0049382_46	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049382_47	PF11337	N/A	N/A	N/A	N/A
KOfam	UHGV-0049382_48	K14060	141.5	7.49975e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0049382_48	phrog_125	184.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049382_48	UniRef90_R6N9Q2	364.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0049382_48	931626.Awo_c01430	207.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0049382_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0049382_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0049382_48	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_50	phrog_38	190.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0049382_50	UniRef90_A0A810QA10	654.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0049382_50	1298920.KI911353_gene2682	473.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0049382_50	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0049382_50	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049382_50	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_51	phrog_64	247.9	0	portal protein	head and packaging
UniRef90	UHGV-0049382_51	UniRef90_R6P563	948.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0049382_51	1121866.AUGK01000003_gene1429	426.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0049382_51	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0049382_51	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_53	phrog_544	58.7	7.6e-17	major head protein	head and packaging
UniRef90	UHGV-0049382_53	UniRef90_A0A6N3FT63	139.0	4.92e-36	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0049382_53	428127.EUBDOL_01555	248.0	0	N/A	N/A
structural_annotation	UHGV-0049382_53	PF06673,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049382_54	UniRef90_R6N215	206.0	0	Phage QLRG family putative DNA packaging	N/A
eggNOG-mapper	UHGV-0049382_54	1298920.KI911353_gene2658	50.8	0.00000102	N/A	N/A
Pfam	UHGV-0049382_54	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0049382_54	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049382_55	1121866.AUGK01000003_gene1432	85.9	1.3e-19	N/A	N/A
UniRef90	UHGV-0049382_56	UniRef90_UPI001BBD4500	64.3	0.000000000927	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0049382_56	1298920.KI911353_gene2654	74.7	0.0000000000000224	N/A	N/A
eggNOG-mapper	UHGV-0049382_57	1121333.JMLH01000047_gene1014	53.5	0.00000046	N/A	N/A
structural_annotation	UHGV-0049382_57	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_58	phrog_158	57.7	2.3e-16	major tail protein	tail
UniRef90	UHGV-0049382_58	UniRef90_A0A1C6L0H9	240.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0049382_58	1232453.BAIF02000058_gene1634	107.0	6.22e-28	N/A	N/A
structural_annotation	UHGV-0049382_58	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049382_59	UniRef90_A0A496N7D3	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049382_59	469596.HMPREF9488_01311	94.0	1.61e-23	N/A	N/A
Pfam	UHGV-0049382_59	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0049382_59	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049382_60	1121333.JMLH01000047_gene1011	81.3	1.09e-17	N/A	N/A
PHROG	UHGV-0049382_61	phrog_1535	147.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0049382_61	428125.CLOLEP_01422	353.0	0	phage tail tape measure protein	N/A
COG	UHGV-0049382_61	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0049382_62	phrog_1194	58.5	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0049382_62	742740.HMPREF9474_03515	62.0	0.000000000148	N/A	N/A
Pfam	UHGV-0049382_62	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0049382_62	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_63	phrog_13879	270.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0049382_63	1304866.K413DRAFT_0774	58.5	0.00000756	N/A	N/A
structural_annotation	UHGV-0049382_63	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0049382_64	phrog_18725	46.0	0.00000000000068	N/A	unknown function
eggNOG-mapper	UHGV-0049382_64	665956.HMPREF1032_02705	100.0	2.2e-25	N/A	N/A
eggNOG-mapper	UHGV-0049382_65	742740.HMPREF9474_03518	59.3	0.00000000162	N/A	N/A