UHGV-0049960 (vOTU-039439)

Viral Genome: UHGV-0049960

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0049960
vOTU ID	vOTU-039439
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_65592
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.24 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9736
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.8
Jumbo phage	No

Genome content
Genome length (bp)	34,144
GC content	40.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	632.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0049960_1	phrog_190	121.1	8.2e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049960_1	UniRef90_A0A7X2XHL8	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049960_1	1009370.ALO_12696	102.0	1.24e-26	N/A	N/A
Pfam	UHGV-0049960_1	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0049960_1	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_9	phrog_8684	84.3	3.9e-25	N/A	unknown function
UniRef90	UHGV-0049960_9	UniRef90_A0A7X2XHJ6	283.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0049960_9	40522.A8ASP1_BPA50	68.6	0.00000000000103	YopX protein	N/A
Pfam	UHGV-0049960_9	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0049960_9	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0049960_9	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049960_11	UniRef90_A0A412X6I8	191.0	0	Zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0049960_11	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0049960_12	PF02917,NF041482,COG1859	N/A	N/A	N/A	N/A
KOfam	UHGV-0049960_15	K03111	147.4	1.49939e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0049960_15	phrog_44	146.2	1.90577e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049960_15	UniRef90_UPI000F0C363F	271.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0049960_15	1262914.BN533_00181	196.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0049960_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0049960_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0049960_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0049960_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0049960_15	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0049960_17	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
structural_annotation	UHGV-0049960_17	PF13384	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049960_18	401526.TcarDRAFT_1279	73.2	0.0000000000000296	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0049960_18	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_22	phrog_606	81.9	2.6e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0049960_22	UniRef90_A0A843HSC6	102.0	2.5e-25	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0049960_22	935837.JAEK01000054_gene1463	117.0	3.66e-32	DNA-packaging protein gp3	N/A
Pfam	UHGV-0049960_22	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0049960_22	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_23	phrog_5902	235.6	0	N/A	unknown function
UniRef90	UHGV-0049960_23	UniRef90_UPI001032D579	660.0	0	terminase	N/A
eggNOG-mapper	UHGV-0049960_23	1485543.JMME01000020_gene792	487.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0049960_23	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0049960_23	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_25	phrog_332	295.5	0	head-tail adaptor	connector
UniRef90	UHGV-0049960_25	UniRef90_UPI0010329B07	535.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0049960_25	568816.Acin_1834	238.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0049960_25	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0049960_25	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_26	phrog_528	42.1	0.0000000000084	N/A	unknown function
eggNOG-mapper	UHGV-0049960_26	568816.Acin_1833	66.6	0.00000000000176	N/A	N/A
PHROG	UHGV-0049960_28	phrog_212	85.6	4.69435e-43	major head protein	head and packaging
UniRef90	UHGV-0049960_28	UniRef90_Q775C7	213.0	0	Bbp17	N/A
eggNOG-mapper	UHGV-0049960_28	360910.BAV0425	213.0	0	N/A	N/A
Pfam	UHGV-0049960_28	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0049960_28	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_30	phrog_394	103.8	1.3e-30	tail protein	tail
eggNOG-mapper	UHGV-0049960_30	1122963.AUHB01000020_gene2267	69.3	0.0000000000107	N/A	N/A
structural_annotation	UHGV-0049960_30	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_31	phrog_376	327.0	0	tail protein	tail
UniRef90	UHGV-0049960_31	UniRef90_A0A0U1KV93	167.0	4.5e-39	N/A	N/A
eggNOG-mapper	UHGV-0049960_31	568816.Acin_1828	365.0	0	N/A	N/A
Pfam	UHGV-0049960_31	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0049960_31	PF11134,PF13157,MF_03037,TIGR02658,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_33	phrog_418	44.5	0.0000000000029	internal virion protein	head and packaging
PHROG	UHGV-0049960_35	phrog_4757	42.8	0.0000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0049960_35	1273103.NM10_08089	64.7	0.00000000383	tail collar domain protein	N/A
COG	UHGV-0049960_35	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0049960_37	phrog_1348	62.1	7.6e-18	tail fiber protein	tail
structural_annotation	UHGV-0049960_37	PF14301	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049960_39	568816.Acin_1216	57.0	0.00000000577	N/A	N/A
PHROG	UHGV-0049960_40	phrog_5867	137.5	6.09999e-41	endolysin	lysis
UniRef90	UHGV-0049960_40	UniRef90_A0A7X2XH64	363.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0049960_40	1262914.BN533_02021	219.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0049960_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0049960_40	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0049960_40	MF_04111	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049960_43	UniRef90_A0A412X6W3	104.0	1.53e-27	Sigma70_r4_2 domain-containing protein	N/A
Pfam	UHGV-0049960_43	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0049960_43	PF08281,MF_00245,NF001075,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0049960_45	phrog_9880	377.3	0	N/A	unknown function
UniRef90	UHGV-0049960_45	UniRef90_A0A7X2XH87	1201.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0049960_45	1123288.SOV_1c10750	343.0	0	N/A	N/A
Pfam	UHGV-0049960_45	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
eggNOG-mapper	UHGV-0049960_49	397290.C810_01330	68.9	0.000000000000436	N/A	N/A
eggNOG-mapper	UHGV-0049960_51	1378168.N510_03079	59.7	0.000000016	N/A	N/A