UHGV-0050964 (vOTU-102997)

Viral Genome: UHGV-0050964

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0050964
vOTU ID	vOTU-102997
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_53277
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.35 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9513
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.86
Jumbo phage	No

Genome content
Genome length (bp)	23,151
GC content	51.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	91%
Average CDS length (bps)	569.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0050964_1	phrog_10	177.5	0	major head protein	head and packaging
UniRef90	UHGV-0050964_1	UniRef90_UPI0009511B79	442.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0050964_1	742738.HMPREF9460_01366	213.0	0	Phage capsid family	N/A
Pfam	UHGV-0050964_1	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0050964_1	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0050964_1	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0050964_1	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0050964_2	K06904	74.2	2.3e-21	N/A	N/A
PHROG	UHGV-0050964_2	phrog_80	97.7	2e-28	head maturation protease	head and packaging
UniRef90	UHGV-0050964_2	UniRef90_UPI0018A08760	298.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0050964_2	1304866.K413DRAFT_1224	177.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0050964_2	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0050964_2	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0050964_2	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_3	phrog_12	195.6	0	portal protein	head and packaging
UniRef90	UHGV-0050964_3	UniRef90_UPI00082C9597	560.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0050964_3	1304866.K413DRAFT_1223	385.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0050964_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0050964_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0050964_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0050964_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_4	phrog_9	243.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0050964_4	UniRef90_UPI0018982ECF	880.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0050964_4	1414720.CBYM010000002_gene575	789.0	0	Terminase	N/A
Pfam	UHGV-0050964_4	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0050964_4	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0050964_4	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0050964_4	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_5	phrog_83	41.9	0.000000000016	terminase small subunit	head and packaging
UniRef90	UHGV-0050964_5	UniRef90_UPI001898F58A	150.0	2.32616e-43	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0050964_5	397288.C806_00077	120.0	1.18e-31	N/A	N/A
structural_annotation	UHGV-0050964_5	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0050964_6	K07451	41.2	0.000000000027	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0050964_6	phrog_144	67.0	2.9e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050964_6	UniRef90_UPI001897DF0D	145.0	8.57034e-42	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0050964_6	508419.F8J1A6_9CAUD	134.0	1.46e-38	HNH endonuclease	N/A
Pfam	UHGV-0050964_6	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0050964_7	K00571	167.2	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0050964_7	phrog_12862	176.5	0	N/A	unknown function
UniRef90	UHGV-0050964_7	UniRef90_UPI000A26DFF4	373.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0050964_7	665956.HMPREF1032_03611	286.0	0	DNA methylase	N/A
PADLOC	UHGV-0050964_7	MTase_II_00037	146.7	0	Type II methyltransferase	RM
Pfam	UHGV-0050964_7	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0050964_7	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0050964_7	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_8	phrog_36	41.7	0.000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0050964_8	UniRef90_A0A3A9EZN6	117.0	1.69e-31	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0050964_8	1304880.JAGB01000002_gene2225	63.5	0.0000000000532	N/A	N/A
structural_annotation	UHGV-0050964_8	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_10	phrog_98	83.5	1.6e-24	N/A	unknown function
UniRef90	UHGV-0050964_10	UniRef90_UPI000C75AF45	123.0	4.23e-33	YopX family protein	N/A
eggNOG-mapper	UHGV-0050964_10	1423816.BACQ01000027_gene952	100.0	5.57e-25	YopX protein	N/A
Pfam	UHGV-0050964_10	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0050964_10	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0050964_10	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0050964_13	K00558	173.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0050964_13	phrog_363	259.0	0	DNA methyltransferase	other
UniRef90	UHGV-0050964_13	UniRef90_UPI0008F89ADD	415.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0050964_13	742738.HMPREF9460_04053	368.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0050964_13	MTase_II_00058	120.5	1.5e-35	Type II methyltransferase	RM
Pfam	UHGV-0050964_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0050964_13	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0050964_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0050964_13	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0050964_15	K00571	112.7	4.3e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0050964_15	phrog_67	99.2	1.1e-29	DNA methyltransferase	other
UniRef90	UHGV-0050964_15	UniRef90_A0A1C6E5W1	444.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0050964_15	910314.HMPREF9220_0636	391.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0050964_15	MTase_II_00157	88.6	3.2e-26	Type II methyltransferase	RM
Pfam	UHGV-0050964_15	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0050964_15	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0050964_15	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0050964_17	PF08207	N/A	N/A	N/A	N/A
KOfam	UHGV-0050964_18	K03111	128.7	7.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0050964_18	phrog_44	130.1	1.7e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050964_18	UniRef90_A0A3D0XQC0	132.0	4.99e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0050964_18	1007096.BAGW01000023_gene151	120.0	4.95e-33	Single-strand binding protein family	N/A
Pfam	UHGV-0050964_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0050964_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0050964_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0050964_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0050964_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_19	phrog_824	149.4	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0050964_19	UniRef90_UPI001B37B675	165.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0050964_19	397288.C806_00096	150.0	4.2039e-45	VRR_NUC	N/A
Pfam	UHGV-0050964_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0050964_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_20	phrog_3584	116.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050964_20	UniRef90_R6RCC6	207.0	0	Gp31	N/A
eggNOG-mapper	UHGV-0050964_20	536233.CLO_3655	125.0	4.08e-31	N/A	N/A
structural_annotation	UHGV-0050964_20	PF21578,NF033538	N/A	N/A	N/A	N/A
UniRef90	UHGV-0050964_27	UniRef90_A0A4Z0YBW8	76.3	5.74e-17	Helix-turn-helix protein	N/A
Pfam	UHGV-0050964_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0050964_27	PF13560,NF040507,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_28	phrog_8	51.2	0.000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0050964_28	UniRef90_A0A372V3Y4	102.0	9.89e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0050964_28	1378168.N510_01712	74.7	0.0000000000000125	N/A	N/A
Pfam	UHGV-0050964_28	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
structural_annotation	UHGV-0050964_28	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0050964_29	K02342	202.1	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0050964_29	phrog_192	167.7	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050964_29	UniRef90_UPI001897CA3A	366.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-0050964_29	537013.CLOSTMETH_02498	301.0	0	EXOIII	N/A
PADLOC	UHGV-0050964_29	cd06127	145.6	4.1058e-43	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0050964_29	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0050964_29	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0050964_29	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0050964_29	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0050964_29	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050964_31	1232453.BAIF02000097_gene2773	69.7	0.0000000000168	EXOIII	N/A
COG	UHGV-0050964_31	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
KOfam	UHGV-0050964_32	K23779	44.7	0.0000000000029	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0050964_32	UniRef90_A0A2V2DVS1	95.9	2.05e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0050964_32	1029718.SFBM_0145	85.1	6.51e-21	Helix-turn-helix domain	N/A
Pfam	UHGV-0050964_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0050964_32	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
UniRef90	UHGV-0050964_33	UniRef90_UPI001F249590	106.0	1.53e-27	N/A	N/A
eggNOG-mapper	UHGV-0050964_33	1508644.SFBmNL_01515	118.0	1.01e-33	N/A	N/A
Pfam	UHGV-0050964_33	PF10387	N/A	N/A	N/A	DUF2442
structural_annotation	UHGV-0050964_33	PF10387	N/A	N/A	N/A	N/A
PHROG	UHGV-0050964_34	phrog_14333	119.3	1.5e-35	N/A	unknown function
UniRef90	UHGV-0050964_34	UniRef90_UPI001A5065F6	144.0	1.89175e-43	N/A	N/A
eggNOG-mapper	UHGV-0050964_34	1508644.SFBmNL_01514	134.0	2.93e-40	N/A	N/A
Pfam	UHGV-0050964_34	PF13711	N/A	N/A	N/A	DUF4160
structural_annotation	UHGV-0050964_34	PF13711	N/A	N/A	N/A	N/A
KOfam	UHGV-0050964_35	K06400	305.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0050964_35	phrog_95	327.5	0	integrase	integration and excision
UniRef90	UHGV-0050964_35	UniRef90_UPI00093CA09A	615.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0050964_35	1120746.CCNL01000010_gene1415	475.0	0	recombinase activity	N/A
Pfam	UHGV-0050964_35	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0050964_35	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0050964_35	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0050964_35	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0050964_35	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050964_36	1121334.KB911066_gene807	288.0	0	N/A	N/A
KOfam	UHGV-0050964_37	K03657	677.7	0	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	N/A
PHROG	UHGV-0050964_37	phrog_1967	411.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050964_37	UniRef90_A0A3D3Y5Q2	1519.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0050964_37	1120746.CCNL01000010_gene1411	964.0	0	UvrD/REP helicase N-terminal domain	N/A
PADLOC	UHGV-0050964_37	GajB_00012	332.3	0	UrvD helicase	Gabija
Pfam	UHGV-0050964_37	PF00580	N/A	N/A	UvrD/REP helicase N-terminal domain	UvrD-helicase
Pfam	UHGV-0050964_37	PF13361	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C
Pfam	UHGV-0050964_37	PF21196	N/A	N/A	PcrA/UvrD tudor domain	PcrA_UvrD_tudor
COG	UHGV-0050964_37	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
structural_annotation	UHGV-0050964_37	PF00580,PF13361,PF12073,MF_01920,NF008743,COG0210	N/A	N/A	N/A	N/A