UHGV-0051975 (vOTU-086188)

Viral Genome: UHGV-0051975

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0051975
vOTU ID	vOTU-086188
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_61284
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.98
Jumbo phage	No

Genome content
Genome length (bp)	39,742
GC content	51.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	95%
Average CDS length (bps)	689.18
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0051975_1	phrog_14770	103.1	5.6e-31	N/A	unknown function
UniRef90	UHGV-0051975_1	UniRef90_A0A8D9UHE1	2060.0	0	PolyVal ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0051975_1	445971.ANASTE_00728	283.0	0	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	N/A
Pfam	UHGV-0051975_1	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0051975_1	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0051975_1	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0051975_1	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0051975_2	MF_01304	N/A	N/A	N/A	N/A
KOfam	UHGV-0051975_3	K01448	60.7	2.1e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0051975_3	phrog_435	74.1	2.6e-21	endolysin	lysis
UniRef90	UHGV-0051975_3	UniRef90_A0A2V2GRI9	475.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0051975_3	994573.T472_0210960	95.5	3.35e-21	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0051975_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0051975_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0051975_3	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0051975_4	1347392.CCEZ01000043_gene405	55.5	0.0000000147	N/A	N/A
PHROG	UHGV-0051975_5	phrog_937	54.8	0.0000000000000016	hemolysin	other
eggNOG-mapper	UHGV-0051975_5	1235835.C814_01939	77.4	9.33e-17	N/A	N/A
PHROG	UHGV-0051975_6	phrog_27545	116.8	1.5e-34	N/A	unknown function
UniRef90	UHGV-0051975_6	UniRef90_A0A2V2GQB6	300.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0051975_6	411471.SUBVAR_06976	135.0	7.65e-39	N/A	N/A
Pfam	UHGV-0051975_6	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0051975_9	phrog_2295	47.1	0.000000000000028	N/A	unknown function
Pfam	UHGV-0051975_9	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0051975_9	PF21722	N/A	N/A	N/A	N/A
Pfam	UHGV-0051975_10	PF13418	N/A	N/A	Galactose oxidase, central domain	Kelch_4
KOfam	UHGV-0051975_11	K19719	253.9	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0051975_11	phrog_819	145.9	0	tail protein	tail
UniRef90	UHGV-0051975_11	UniRef90_A0A8D9PE13	723.0	0	Virion structural protein	N/A
eggNOG-mapper	UHGV-0051975_11	33035.JPJF01000033_gene2261	58.9	0.00000573	tail collar domain protein	N/A
Pfam	UHGV-0051975_11	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0051975_11	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0051975_12	phrog_3287	131.9	3.7e-39	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0051975_12	665956.HMPREF1032_03917	479.0	0	N/A	N/A
structural_annotation	UHGV-0051975_12	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_14	phrog_15239	42.5	0.0000000000096	N/A	unknown function
PHROG	UHGV-0051975_15	phrog_1357	243.7	0	major head protein	head and packaging
UniRef90	UHGV-0051975_15	UniRef90_A0A8D9UHB3	597.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0051975_15	696281.Desru_1092	290.0	0	N/A	N/A
NCBIFam	UHGV-0051975_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0051975_15	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0051975_16	UniRef90_A0A8D9UHB9	416.0	0	Non-structural protein 5	N/A
UniRef90	UHGV-0051975_17	UniRef90_A0A8D9UHD6	124.0	4.05e-36	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0051975_17	PF20020	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_18	phrog_156	170.7	0	portal protein	head and packaging
UniRef90	UHGV-0051975_18	UniRef90_A0A8D9UHD1	1123.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0051975_18	1121091.AUMP01000003_gene2583	365.0	0	N/A	N/A
Pfam	UHGV-0051975_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0051975_18	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0051975_20	K06909	141.6	6.69961e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0051975_20	phrog_979	163.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0051975_20	UniRef90_A0A8D9UH35	924.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0051975_20	1232449.BAHV02000016_gene1824	481.0	0	N/A	N/A
Pfam	UHGV-0051975_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0051975_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0051975_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0051975_21	UniRef90_A0A8D9UHF6	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0051975_21	272630.MexAM1_META1p3985	56.6	0.00000000407	N/A	N/A
Pfam	UHGV-0051975_21	PF18932	N/A	N/A	N/A	DUF5681
PHROG	UHGV-0051975_22	phrog_7339	103.6	1.8e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051975_22	UniRef90_A0A2V2GLL9	532.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0051975_22	1150474.JQJI01000006_gene784	95.1	1.92e-20	metallophosphoesterase	N/A
Pfam	UHGV-0051975_22	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0051975_22	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0051975_22	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_23	phrog_36	41.9	0.000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0051975_23	UniRef90_UPI001D0837DD	115.0	3.54e-30	N/A	N/A
eggNOG-mapper	UHGV-0051975_23	428125.CLOLEP_01806	89.4	1.35e-20	N/A	N/A
structural_annotation	UHGV-0051975_23	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_25	phrog_954	203.6	0	DNA methyltransferase	other
UniRef90	UHGV-0051975_25	UniRef90_A0A810Q0N4	328.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0051975_25	1280698.AUJS01000007_gene1028	278.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0051975_25	MTase_II_00074	204.8	0	Type II methyltransferase	RM
Pfam	UHGV-0051975_25	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0051975_25	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0051975_25	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0051975_32	TIGR04381	N/A	N/A	N/A	N/A
KOfam	UHGV-0051975_34	K01160	68.6	1.7e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0051975_34	phrog_34	71.2	1.6e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051975_34	UniRef90_A0A498CNH4	142.0	1.76003e-41	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-0051975_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0051975_34	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_35	phrog_9804	165.1	0	N/A	unknown function
UniRef90	UHGV-0051975_35	UniRef90_UPI001E312ACC	362.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0051975_35	1121344.JHZO01000003_gene981	180.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0051975_35	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0051975_35	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_36	phrog_16304	72.5	4.9e-21	N/A	unknown function
UniRef90	UHGV-0051975_36	UniRef90_UPI001E560709	242.0	0	N/A	N/A
eggNOG-mapper	UHGV-0051975_36	290402.Cbei_3733	61.6	0.0000000137	DnaD domain protein	N/A
Pfam	UHGV-0051975_36	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0051975_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0051975_36	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0051975_37	K03111	129.5	4.2e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0051975_37	phrog_44	133.3	1.8e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051975_37	UniRef90_UPI001E2A5A6F	234.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0051975_37	445972.ANACOL_01827	128.0	1.87e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0051975_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0051975_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0051975_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0051975_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0051975_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_38	phrog_1035	63.7	4.5e-18	endonuclease VII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051975_38	UniRef90_A0A7S5R1H6	152.0	1.23314e-43	HNH endonuclease protein	N/A
eggNOG-mapper	UHGV-0051975_38	411462.DORLON_00791	71.6	0.00000000000104	N/A	N/A
PHROG	UHGV-0051975_39	phrog_757	166.6	0	DNA methyltransferase	other
UniRef90	UHGV-0051975_39	UniRef90_A0A355YQL4	342.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0051975_39	742733.HMPREF9469_01835	278.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0051975_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0051975_39	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_40	phrog_7566	53.6	0.0000000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0051975_40	693746.OBV_24070	69.3	0.000000000000114	N/A	N/A
PHROG	UHGV-0051975_41	phrog_1389	64.2	2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0051975_41	883156.HMPREF9282_01223	67.8	0.000000000000405	N/A	N/A
structural_annotation	UHGV-0051975_41	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_42	phrog_659	196.3	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051975_42	UniRef90_UPI001E5A6693	420.0	0	N/A	N/A
eggNOG-mapper	UHGV-0051975_42	1507.HMPREF0262_00431	236.0	0	N/A	N/A
Pfam	UHGV-0051975_42	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0051975_42	PF06378,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0051975_46	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0051975_47	PF12728,NF040990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0051975_48	UniRef90_UPI001956DCC9	89.4	3.47e-22	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0051975_48	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0051975_49	phrog_8	46.6	0.00000000000083	transcriptional regulator	transcription regulation
UniRef90	UHGV-0051975_49	UniRef90_A0A417HNT1	99.4	1.79e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0051975_49	1378168.N510_01712	74.3	0.0000000000000132	N/A	N/A
Pfam	UHGV-0051975_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0051975_49	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0051975_50	UniRef90_UPI001E2EC555	211.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0051975_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0051975_50	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0051975_50	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0051975_54	K14059	204.4	0	int; integrase	N/A
PHROG	UHGV-0051975_54	phrog_1	184.2	0	integrase	integration and excision
UniRef90	UHGV-0051975_54	UniRef90_A0A8D9PE11	351.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0051975_54	693746.OBV_01970	155.0	4.65007e-41	Phage integrase family	N/A
Pfam	UHGV-0051975_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0051975_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0051975_54	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0051975_55	K01893	110.4	1.7e-32	NARS, asnS; asparaginyl-tRNA synthetase [EC:6.1.1.22]	N/A
PHROG	UHGV-0051975_55	phrog_19509	43.5	0.0000000000026	N/A	unknown function
UniRef90	UHGV-0051975_55	UniRef90_A0A3D2YIN7	162.0	0	Asparagine--tRNA ligase (Fragment)	N/A
eggNOG-mapper	UHGV-0051975_55	537013.CLOSTMETH_01667	173.0	0	asparaginyl-tRNA synthetase	N/A
Pfam	UHGV-0051975_55	PF01336	N/A	N/A	OB-fold nucleic acid binding domain	tRNA_anti-codon
COG	UHGV-0051975_55	COG0017	N/A	N/A	Aspartyl/asparaginyl-tRNA synthetase	N/A