UHGV-0053292 (vOTU-010326)

Viral Genome: UHGV-0053292

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0053292
vOTU ID	vOTU-010326
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_60392
Associated BioSample	SAMEA2338759
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	5
Recoded stop codon	No

Viral Content
geNomad score	0.9697
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.71
Jumbo phage	No

Genome content
Genome length (bp)	33,971
GC content	41.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	93%
Average CDS length (bps)	524.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0053292_3	phrog_874	170.4	0	N/A	unknown function
UniRef90	UHGV-0053292_3	UniRef90_A0A6N7W7Q7	203.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0053292_3	411468.CLOSCI_00298	175.0	0	N/A	N/A
structural_annotation	UHGV-0053292_3	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_5	phrog_20593	45.3	0.00000000000059	N/A	unknown function
PHROG	UHGV-0053292_6	phrog_599	41.5	0.000000000028	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0053292_6	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0053292_6	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0053292_6	PF14354	N/A	N/A	N/A	N/A
UniRef90	UHGV-0053292_7	UniRef90_UPI001C039694	70.9	0.00000000000013	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0053292_7	1235800.C819_02246	65.9	0.0000000000195	N/A	N/A
Pfam	UHGV-0053292_7	PF12773	N/A	N/A	Double zinc ribbon	DZR
PHROG	UHGV-0053292_8	phrog_8684	88.9	1.5e-26	N/A	unknown function
UniRef90	UHGV-0053292_8	UniRef90_A0A3R6DZN9	175.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0053292_8	411470.RUMGNA_02199	91.7	7.83e-22	N/A	N/A
Pfam	UHGV-0053292_8	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0053292_8	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0053292_8	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0053292_9	UniRef90_A0A415TX35	151.0	2.94273e-44	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0053292_9	1235790.C805_00035	58.2	0.00000000606	N/A	N/A
PHROG	UHGV-0053292_12	phrog_2600	142.0	4.90034e-42	N/A	unknown function
eggNOG-mapper	UHGV-0053292_12	1178540.BA70_18565	185.0	0	N/A	N/A
PHROG	UHGV-0053292_13	phrog_16427	85.4	7.2e-25	DNA methyltransferase	other
UniRef90	UHGV-0053292_13	UniRef90_A0A412KFA2	364.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0053292_13	1121115.AXVN01000007_gene3542	126.0	7.81e-31	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0053292_13	oMTase_00023	62.3	6e-18	orphan methyltransferase	RM
Pfam	UHGV-0053292_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0053292_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0053292_14	K00558	125.6	3e-37	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0053292_14	phrog_116	137.6	6.29996e-41	DNA methyltransferase	other
UniRef90	UHGV-0053292_14	UniRef90_A0A1Q6KI63	481.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0053292_14	397290.C810_05213	318.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0053292_14	MTase_II_00058	140.2	3.00004e-41	Type II methyltransferase	RM
Pfam	UHGV-0053292_14	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0053292_14	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0053292_14	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0053292_14	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_17	phrog_2562	118.1	3.4e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0053292_17	UniRef90_A0A174JL72	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-0053292_17	1232453.BAIF02000057_gene1144	281.0	0	N/A	N/A
Pfam	UHGV-0053292_17	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0053292_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0053292_17	PF14297,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_18	phrog_36	71.2	1.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0053292_18	UniRef90_R9KSR0	58.5	0.000000043	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0053292_18	1235793.C809_01914	58.5	0.00000000722	sigma factor activity	N/A
Pfam	UHGV-0053292_18	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0053292_18	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0053292_18	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0053292_29	K18830	74.2	2.1e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0053292_29	phrog_8	50.6	0.000000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0053292_29	UniRef90_A0A3R6JTC8	171.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0053292_29	887325.HMPREF0381_0352	146.0	1.21913e-43	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0053292_29	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0053292_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0053292_29	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0053292_31	UniRef90_UPI001D047288	112.0	1.06e-26	Ltp family lipoprotein	N/A
UniRef90	UHGV-0053292_33	UniRef90_R7QUM8	63.9	0.00000000000411	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0053292_33	411461.DORFOR_01128	59.3	0.0000000000463	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0053292_33	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0053292_33	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_35	phrog_13890	48.9	0.000000000000063	N/A	unknown function
KOfam	UHGV-0053292_36	K17733	148.9	3.36312e-44	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0053292_36	phrog_2649	175.7	0	endolysin	lysis
UniRef90	UHGV-0053292_36	UniRef90_R9KCW9	360.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0053292_36	397290.C810_03258	360.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0053292_36	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
Pfam	UHGV-0053292_36	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0053292_36	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
PHROG	UHGV-0053292_37	phrog_443	58.0	2.8e-16	holin	lysis
UniRef90	UHGV-0053292_37	UniRef90_A0A1I0HNR6	94.4	4.53e-24	Holin, r1t family	N/A
eggNOG-mapper	UHGV-0053292_37	397288.C806_00114	85.9	1.72e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0053292_37	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0053292_37	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_38	phrog_4105	68.8	7.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0053292_38	1235790.C805_00613	160.0	0	N/A	N/A
UniRef90	UHGV-0053292_39	UniRef90_A0A011UAK9	55.5	0.00000000293	Antitoxin	N/A
structural_annotation	UHGV-0053292_40	PF10618,MF_01370	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_41	phrog_9994	199.7	0	N/A	unknown function
UniRef90	UHGV-0053292_41	UniRef90_A0A845KHH7	104.0	2.01e-22	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0053292_41	1256908.HMPREF0373_00465	168.0	0	N/A	N/A
structural_annotation	UHGV-0053292_41	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_42	phrog_538	118.8	0	minor tail protein	tail
eggNOG-mapper	UHGV-0053292_42	1256908.HMPREF0373_00466	208.0	0	N/A	N/A
Pfam	UHGV-0053292_42	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0053292_42	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_43	phrog_33	58.0	2.9e-16	distal tail protein Dit	tail
UniRef90	UHGV-0053292_43	UniRef90_UPI0015709E93	225.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0053292_43	411461.DORFOR_01176	192.0	0	N/A	N/A
structural_annotation	UHGV-0053292_43	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0053292_44	K10421	49.7	0.000000000000033	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0053292_44	phrog_1272	298.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0053292_44	UniRef90_A0A6N7Y0D1	334.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0053292_44	397290.C810_00429	248.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0053292_44	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0053292_44	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0053292_44	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0053292_45	1121866.AUGK01000006_gene886	68.9	0.000000000000207	N/A	N/A
Pfam	UHGV-0053292_46	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
UniRef90	UHGV-0053292_47	UniRef90_A0A316S919	162.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0053292_47	1121866.AUGK01000006_gene884	164.0	0	N/A	N/A
structural_annotation	UHGV-0053292_47	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_48	phrog_5509	90.2	1.9e-26	neck protein	connector
UniRef90	UHGV-0053292_48	UniRef90_W0FMR6	95.9	7.64e-23	Gp9 protein	N/A
eggNOG-mapper	UHGV-0053292_48	1408823.AXUS01000025_gene2627	79.3	3.62e-17	N/A	N/A
structural_annotation	UHGV-0053292_48	TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0053292_49	1121866.AUGK01000006_gene883	54.7	0.0000000695	N/A	N/A
structural_annotation	UHGV-0053292_49	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_50	phrog_5635	59.7	5.8e-17	head-tail adaptor	connector
UniRef90	UHGV-0053292_50	UniRef90_UPI0011070497	94.0	1.38e-22	phage head closure protein	N/A
eggNOG-mapper	UHGV-0053292_50	1220589.CD32_01710	58.2	0.00000000319	N/A	N/A
structural_annotation	UHGV-0053292_50	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_51	phrog_749	53.1	0.0000000000000054	N/A	unknown function
UniRef90	UHGV-0053292_51	UniRef90_W0FM58	95.1	3.77e-23	Gp6 protein	N/A
eggNOG-mapper	UHGV-0053292_51	1121866.AUGK01000006_gene881	53.5	0.00000012	N/A	N/A
PHROG	UHGV-0053292_52	phrog_10	88.8	6.8e-26	major head protein	head and packaging
UniRef90	UHGV-0053292_52	UniRef90_A0A173S099	476.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0053292_52	1211817.CCAT010000053_gene2132	333.0	0	Phage capsid family	N/A
Pfam	UHGV-0053292_52	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0053292_52	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0053292_52	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0053292_52	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0053292_53	K01358	119.5	4e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0053292_53	phrog_94	196.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0053292_53	UniRef90_A0A7U9NK92	231.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0053292_53	1235792.C808_00085	223.0	0	Clp protease	N/A
Pfam	UHGV-0053292_53	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0053292_53	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0053292_53	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_54	phrog_12	100.4	6.2e-30	portal protein	head and packaging
UniRef90	UHGV-0053292_54	UniRef90_A0A173RYU7	477.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0053292_54	349161.Dred_2606	224.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0053292_54	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0053292_54	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0053292_54	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0053292_54	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_55	phrog_9	250.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0053292_55	UniRef90_A0A412EM51	823.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0053292_55	610130.Closa_0741	773.0	0	Phage Terminase	N/A
Pfam	UHGV-0053292_55	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0053292_55	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0053292_55	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0053292_55	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0053292_56	phrog_5110	110.6	6.6e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0053292_56	UniRef90_UPI001D0732BF	129.0	2.13e-36	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0053292_56	349161.Dred_2608	103.0	3.47e-27	N/A	N/A
Pfam	UHGV-0053292_56	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0053292_56	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0053292_57	K07451	43.5	0.0000000000057	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0053292_57	phrog_119	65.5	7.9e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0053292_57	UniRef90_A0A412EM28	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0053292_57	768710.DesyoDRAFT_1275	94.7	1.1e-22	HNH nucleases	N/A
COG	UHGV-0053292_57	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0053292_58	K04763	122.6	4.8e-36	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0053292_58	phrog_216	179.9	0	integrase	integration and excision
UniRef90	UHGV-0053292_58	UniRef90_A0A1Q9J4X9	276.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0053292_58	1235793.C809_02656	206.0	0	PFAM Phage integrase family	N/A
Pfam	UHGV-0053292_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0053292_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0053292_58	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0053292_60	K03090	129.3	3.9e-38	sigB; RNA polymerase sigma-B factor	N/A
PHROG	UHGV-0053292_60	phrog_351	114.1	1.5e-33	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0053292_60	UniRef90_A0A354D1W6	307.0	0	RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0053292_60	397290.C810_02229	279.0	0	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	N/A
Pfam	UHGV-0053292_60	PF04539	N/A	N/A	Sigma-70 region 3	Sigma70_r3
Pfam	UHGV-0053292_60	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0053292_60	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0053292_60	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0053292_60	PF04545,PF04539,MF_00962,NF006071,COG1191	N/A	N/A	N/A	N/A