UHGV-0053694 (vOTU-115064)

Viral Genome: UHGV-0053694

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0053694
vOTU ID	vOTU-115064
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_32187
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.33 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9669
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.29
Jumbo phage	No

Genome content
Genome length (bp)	37,202
GC content	42.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	95%
Average CDS length (bps)	802.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0053694_1	phrog_443	59.6	9.5e-17	holin	lysis
UniRef90	UHGV-0053694_1	UniRef90_A0A1M6RHE6	92.4	2.36e-23	Holin, r1t family	N/A
eggNOG-mapper	UHGV-0053694_1	411490.ANACAC_00704	82.8	2.78e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0053694_1	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0053694_1	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0053694_2	K07273	172.4	0	acm; lysozyme	N/A
PHROG	UHGV-0053694_2	phrog_291	143.0	2.59941e-42	endolysin	lysis
UniRef90	UHGV-0053694_2	UniRef90_A0A354MB03	365.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0053694_2	398512.JQKC01000068_gene4270	260.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0053694_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0053694_2	COG0810	N/A	N/A	Periplasmic protein TonB, links inner and outer membranes	N/A
structural_annotation	UHGV-0053694_2	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_3	phrog_1863	59.4	3.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0053694_3	665956.HMPREF1032_02709	95.9	7.17e-25	N/A	N/A
KOfam	UHGV-0053694_4	K03088	41.4	0.000000000024	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	N/A
UniRef90	UHGV-0053694_4	UniRef90_A0A354MB05	184.0	0	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-0053694_4	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0053694_4	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-0053694_5	phrog_22978	765.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0053694_5	997353.HMPREF9144_0995	98.2	4.92e-17	acetyltransferase	N/A
COG	UHGV-0053694_5	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
UniRef90	UHGV-0053694_6	UniRef90_A0A1V5RXD7	145.0	4.68e-36	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0053694_6	1410650.JHWL01000003_gene2815	116.0	3.24e-26	N/A	N/A
PHROG	UHGV-0053694_7	phrog_372	167.7	0	tail protein	tail
UniRef90	UHGV-0053694_7	UniRef90_A0A3E3E6C0	158.0	6e-38	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0053694_7	1123315.AUIP01000001_gene1436	145.0	3.1e-34	N/A	N/A
structural_annotation	UHGV-0053694_7	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0053694_8	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_9	phrog_511	241.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0053694_9	1410650.JHWL01000003_gene2827	351.0	0	N/A	N/A
structural_annotation	UHGV-0053694_9	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_10	phrog_12105	131.2	4.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-0053694_10	1519439.JPJG01000060_gene1891	66.6	0.00000000000213	N/A	N/A
PHROG	UHGV-0053694_11	phrog_15239	54.4	0.0000000000000022	N/A	unknown function
PHROG	UHGV-0053694_12	phrog_1357	279.7	0	major head protein	head and packaging
UniRef90	UHGV-0053694_12	UniRef90_A0A2V2GQW4	426.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0053694_12	748224.HMPREF9436_01399	356.0	0	N/A	N/A
Pfam	UHGV-0053694_12	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0053694_12	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0053694_12	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_13	phrog_13908	293.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0053694_13	1410650.JHWL01000003_gene2831	146.0	5.36e-39	N/A	N/A
KOfam	UHGV-0053694_14	K07584	64.5	2.1e-18	N/A	N/A
PHROG	UHGV-0053694_14	phrog_4478	56.3	2.6e-16	peptidase	other
UniRef90	UHGV-0053694_14	UniRef90_A0A357NCE2	52.4	0.00000208	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0053694_14	588581.Cpap_3427	52.4	0.000000357	Cysteine protease Prp	N/A
Pfam	UHGV-0053694_14	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0053694_14	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0053694_14	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_15	phrog_156	321.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0053694_15	1410650.JHWL01000003_gene2833	595.0	0	N/A	N/A
structural_annotation	UHGV-0053694_15	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0053694_16	K06909	98.4	8.6e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0053694_16	phrog_979	197.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0053694_16	UniRef90_UPI001D0245C4	659.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0053694_16	748224.HMPREF9436_01395	597.0	0	Terminase-like family	N/A
Pfam	UHGV-0053694_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0053694_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0053694_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0053694_24	UniRef90_UPI000E4DC4DA	102.0	3.66e-25	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0053694_24	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_26	phrog_13321	62.6	5.5e-19	N/A	unknown function
UniRef90	UHGV-0053694_26	UniRef90_UPI00030D2C45	323.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-0053694_26	1007096.BAGW01000031_gene122	323.0	0	PFAM Radical SAM	N/A
Pfam	UHGV-0053694_26	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0053694_26	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0053694_26	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_29	phrog_8841	438.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0053694_29	UniRef90_A0A3E2X397	455.0	0	N/A	N/A
eggNOG-mapper	UHGV-0053694_29	1298920.KI911353_gene4866	434.0	0	N/A	N/A
Pfam	UHGV-0053694_29	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0053694_29	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0053694_29	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0053694_29	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0053694_30	K02316	81.7	1.2e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0053694_30	phrog_11992	100.5	2.3e-29	N/A	unknown function
UniRef90	UHGV-0053694_30	UniRef90_A0A1H9YJB0	100.0	8.21e-24	CHC2 zinc finger	N/A
eggNOG-mapper	UHGV-0053694_30	411460.RUMTOR_02069	89.4	3.14e-20	CHC2 zinc finger	N/A
PADLOC	UHGV-0053694_30	drt-UG29	67.3	1.7e-19	DRT	DRT
Pfam	UHGV-0053694_30	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0053694_30	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0053694_30	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_31	phrog_3490	92.4	2.5e-27	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0053694_31	UniRef90_A0A3D4T734	194.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0053694_31	861454.HMPREF9099_00350	86.3	9.01e-19	ERCC4 domain	N/A
structural_annotation	UHGV-0053694_31	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0053694_32	K03111	133.1	3.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0053694_32	phrog_44	133.6	1.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0053694_32	UniRef90_A0A3D4T9F8	258.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0053694_32	1507.HMPREF0262_03706	144.0	2.79979e-42	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0053694_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0053694_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0053694_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0053694_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0053694_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_34	phrog_3657	341.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0053694_34	1089546.AQUI01000002_gene127	211.0	0	N/A	N/A
structural_annotation	UHGV-0053694_35	PF19157	N/A	N/A	N/A	N/A
KOfam	UHGV-0053694_36	K10906	88.6	2e-33	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0053694_36	phrog_412	241.4	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0053694_36	UniRef90_A0A3D4T735	434.0	0	N/A	N/A
eggNOG-mapper	UHGV-0053694_36	1454004.AW11_02382	162.0	0	N/A	N/A
Pfam	UHGV-0053694_36	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0053694_36	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0053694_36	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_39	phrog_424	83.3	2.3e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0053694_39	693746.OBV_43240	564.0	0	N/A	N/A
COG	UHGV-0053694_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0053694_39	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0053694_41	UniRef90_A0A316R8G0	61.6	0.0000000000321	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0053694_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0053694_41	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_42	phrog_8	49.9	0.00000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0053694_42	UniRef90_A0A1C5RL31	72.4	0.0000000000000532	Conjugal transfer protein TrbA	N/A
eggNOG-mapper	UHGV-0053694_42	1391647.AVSV01000039_gene1077	65.5	0.00000000000379	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0053694_42	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0053694_42	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0053694_43	phrog_87	75.4	6.9e-22	metallo-protease	other
UniRef90	UHGV-0053694_43	UniRef90_A0A845R3J4	145.0	3.00018e-42	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0053694_43	1007096.BAGW01000011_gene2354	114.0	1e-30	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0053694_43	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0053694_43	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0053694_43	PF06114,COG2856	N/A	N/A	N/A	N/A