UHGV-0054502 (vOTU-143320)

Viral Genome: UHGV-0054502

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0054502
vOTU ID	vOTU-143320
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_54903
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9407
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.74
Jumbo phage	No

Genome content
Genome length (bp)	19,389
GC content	39.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	23
CDS density	95%
Average CDS length (bps)	796.70
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0054502_1	phrog_13845	136.5	6.89999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0054502_1	1399942.U3PDR2_9CAUD	124.0	4.54e-35	N/A	N/A
structural_annotation	UHGV-0054502_1	PF05119,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_2	phrog_9	274.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0054502_2	UniRef90_UPI001F2E3C42	753.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0054502_2	508419.F8J159_9CAUD	735.0	0	Phage Terminase	N/A
Pfam	UHGV-0054502_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0054502_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0054502_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_3	phrog_12	188.7	0	portal protein	head and packaging
UniRef90	UHGV-0054502_3	UniRef90_A0A1U7M531	432.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0054502_3	1304866.K413DRAFT_1223	389.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0054502_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0054502_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0054502_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0054502_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_4	phrog_4936	168.5	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0054502_4	UniRef90_R6HCE3	463.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0054502_4	767817.Desgi_4387	148.0	1.65003e-41	BRO family, N-terminal domain	N/A
Pfam	UHGV-0054502_4	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0054502_4	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0054502_4	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0054502_5	K06904	82.3	8.7e-24	N/A	N/A
PHROG	UHGV-0054502_5	phrog_80	103.6	3.4e-30	head maturation protease	head and packaging
UniRef90	UHGV-0054502_5	UniRef90_R6GRF8	376.0	0	Phage prohead protease HK97 family	N/A
eggNOG-mapper	UHGV-0054502_5	903814.ELI_1298	202.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0054502_5	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0054502_5	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0054502_5	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0054502_5	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_6	phrog_10	200.0	0	major head protein	head and packaging
UniRef90	UHGV-0054502_6	UniRef90_A0A2C1KUJ3	286.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0054502_6	903814.ELI_1299	274.0	0	Phage capsid family	N/A
Pfam	UHGV-0054502_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0054502_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0054502_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0054502_6	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_7	phrog_12102	89.5	2.5e-26	N/A	unknown function
UniRef90	UHGV-0054502_7	UniRef90_A0A1M7XXM9	87.8	2e-21	Head fiber protein	N/A
eggNOG-mapper	UHGV-0054502_7	1286171.EAL2_c05900	92.4	4.84e-24	N/A	N/A
UniRef90	UHGV-0054502_8	UniRef90_UPI001BA8BAD6	114.0	5.89e-31	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0054502_8	1399942.U3PCS3_9CAUD	92.0	9.03e-23	N/A	N/A
NCBIFam	UHGV-0054502_8	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0054502_8	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_9	phrog_25	58.7	1.1e-16	head closure Hc1	connector
UniRef90	UHGV-0054502_9	UniRef90_A0A1M5PVN3	95.1	3.66e-23	Phage head-tail adaptor, putative, SPP1 family	N/A
eggNOG-mapper	UHGV-0054502_9	1262449.CP6013_1044	66.6	0.00000000000114	Phage head-tail joining protein	N/A
Pfam	UHGV-0054502_9	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0054502_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0054502_9	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0054502_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_11	phrog_5	52.9	0.0000000000000096	tail completion or Neck1 protein	connector
UniRef90	UHGV-0054502_11	UniRef90_R6GE33	244.0	0	Phage protein HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0054502_11	411459.RUMOBE_00932	68.6	0.000000000000601	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0054502_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0054502_11	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_12	phrog_78	57.1	3.7e-16	tail terminator	connector
UniRef90	UHGV-0054502_12	UniRef90_UPI0003697F12	64.7	0.000000000036	N/A	N/A
eggNOG-mapper	UHGV-0054502_12	1027292.HMPREF9372_1254	68.2	0.000000000000319	N/A	N/A
structural_annotation	UHGV-0054502_12	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_13	phrog_88	94.5	1.2e-27	major tail protein	tail
UniRef90	UHGV-0054502_13	UniRef90_R6GFP9	324.0	0	Putative major tail protein	N/A
eggNOG-mapper	UHGV-0054502_13	1195236.CTER_5106	109.0	1.39e-27	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0054502_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0054502_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054502_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_14	phrog_2115	49.9	0.000000000000079	tail protein	tail
eggNOG-mapper	UHGV-0054502_14	1399942.U3PCS7_9CAUD	87.4	1.2e-20	N/A	N/A
structural_annotation	UHGV-0054502_14	PF11836	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054502_15	UniRef90_A0A7X8U6J7	137.0	2.08999e-40	Antitoxin	N/A
eggNOG-mapper	UHGV-0054502_15	643648.Slip_1156	135.0	1.42001e-40	Antitoxin component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0054502_15	PF02604	N/A	N/A	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
NCBIFam	UHGV-0054502_15	TIGR01552.1	N/A	N/A	type II toxin-antitoxin system prevent-host-death family antitoxin	N/A
COG	UHGV-0054502_15	COG2161	N/A	N/A	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	N/A
structural_annotation	UHGV-0054502_15	PF02604,TIGR01552,COG2161	N/A	N/A	N/A	N/A
KOfam	UHGV-0054502_16	K19092	59.4	1.1e-16	parE1_3_4; toxin ParE1/3/4	N/A
PHROG	UHGV-0054502_16	phrog_2455	70.5	2.3e-20	N/A	unknown function
UniRef90	UHGV-0054502_16	UniRef90_D7CMJ3	118.0	1.7e-32	Addiction module toxin, RelE/StbE family	N/A
eggNOG-mapper	UHGV-0054502_16	643648.Slip_1155	118.0	2.85e-33	Plasmid stabilization system	N/A
Pfam	UHGV-0054502_16	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
NCBIFam	UHGV-0054502_16	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0054502_16	COG3668	N/A	N/A	Plasmid stabilization system protein ParE	N/A
structural_annotation	UHGV-0054502_16	PF05016,TIGR00053,COG3668	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_17	phrog_5493	203.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0054502_17	138119.DSY2176	238.0	0	tape measure	N/A
COG	UHGV-0054502_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0054502_17	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_18	phrog_33	85.8	8.4e-25	distal tail protein Dit	tail
UniRef90	UHGV-0054502_18	UniRef90_UPI0005750BC7	193.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0054502_18	545697.HMPREF0216_00910	172.0	0	tail component	N/A
Pfam	UHGV-0054502_18	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0054502_18	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0054502_18	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0054502_18	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_19	phrog_1067	342.3	0	minor head protein	head and packaging
UniRef90	UHGV-0054502_19	UniRef90_A0A1M6KY09	278.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0054502_19	1567011.A0A0A7RUI9_9VIRU	271.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0054502_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0054502_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0054502_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0054502_22	phrog_23008	72.6	6.3e-25	tail fiber protein	tail
UniRef90	UHGV-0054502_22	UniRef90_A0A2D0LG90	80.1	0.0000000000074	Tail protein	N/A
eggNOG-mapper	UHGV-0054502_22	406818.XBJ1_0929	91.3	4.8e-16	tail collar domain protein	N/A
Pfam	UHGV-0054502_22	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0054502_22	COG2911	N/A	N/A	Autotransporter translocation and assembly protein TamB	N/A