UHGV-0054559 (vOTU-065469)

Viral Genome: UHGV-0054559

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0054559
vOTU ID	vOTU-065469
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_33051
Associated BioSample	SAMEA2154561
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9713
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.97
Jumbo phage	No

Genome content
Genome length (bp)	38,962
GC content	37.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	94%
Average CDS length (bps)	628.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0054559_1	K07273	96.8	3.2e-28	acm; lysozyme	N/A
PHROG	UHGV-0054559_1	phrog_291	85.1	1.2e-24	endolysin	lysis
UniRef90	UHGV-0054559_1	UniRef90_A0A174PB89	653.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0054559_1	469596.HMPREF9488_01959	130.0	4.26e-32	Glycosyl hydrolase family 25	N/A
Pfam	UHGV-0054559_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0054559_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0054559_1	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_2	phrog_199	57.8	1.6e-16	holin	lysis
UniRef90	UHGV-0054559_2	UniRef90_A0A3D5LSL4	257.0	0	Holin	N/A
eggNOG-mapper	UHGV-0054559_2	411470.RUMGNA_02086	188.0	0	N/A	N/A
Pfam	UHGV-0054559_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0054559_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0054559_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0054559_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_3	phrog_1401	58.5	1.2e-16	N/A	unknown function
UniRef90	UHGV-0054559_3	UniRef90_A0A7C6P910	67.8	0.00000000000656	N/A	N/A
eggNOG-mapper	UHGV-0054559_3	1294142.CINTURNW_1041	65.1	0.0000000000136	N/A	N/A
structural_annotation	UHGV-0054559_3	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_5	phrog_6616	160.3	0	tail protein	tail
eggNOG-mapper	UHGV-0054559_5	428127.EUBDOL_01565	219.0	0	cellulase activity	N/A
Pfam	UHGV-0054559_5	PF15711	N/A	N/A	Interleukin-like EMT inducer	ILEI
COG	UHGV-0054559_5	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0054559_5	PF05113,PF04300,PF04862,NF033848,NF033675,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_6	phrog_1401	46.2	0.0000000000008	N/A	unknown function
UniRef90	UHGV-0054559_6	UniRef90_UPI001D00FC65	57.8	0.0000000462	N/A	N/A
eggNOG-mapper	UHGV-0054559_6	1294142.CINTURNW_1041	54.3	0.000000167	N/A	N/A
structural_annotation	UHGV-0054559_6	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_7	phrog_1194	76.3	3.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0054559_7	33035.JPJF01000093_gene2242	154.0	0	N/A	N/A
structural_annotation	UHGV-0054559_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_8	phrog_1535	284.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0054559_8	UniRef90_A0A1C5PIN9	496.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0054559_8	33035.JPJF01000093_gene2243	379.0	0	phage tail tape measure protein	N/A
COG	UHGV-0054559_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0054559_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_9	phrog_8355	118.4	1.6e-35	N/A	unknown function
UniRef90	UHGV-0054559_9	UniRef90_UPI0006BBA9AA	162.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0054559_9	1415775.U729_2613	115.0	3.62e-32	N/A	N/A
Pfam	UHGV-0054559_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0054559_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_10	phrog_8300	65.1	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0054559_10	1151292.QEW_2425	60.1	0.000000000308	N/A	N/A
structural_annotation	UHGV-0054559_10	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_11	phrog_820	108.5	4.8e-32	major tail protein	tail
UniRef90	UHGV-0054559_11	UniRef90_T3DDR1	186.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0054559_11	1151292.QEW_2426	186.0	0	N/A	N/A
structural_annotation	UHGV-0054559_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_12	phrog_2595	88.9	5.1e-26	head-tail connector protein	connector
UniRef90	UHGV-0054559_12	UniRef90_UPI001D068DAC	143.0	1.85994e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0054559_12	742740.HMPREF9474_03510	131.0	1.6e-37	N/A	N/A
Pfam	UHGV-0054559_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0054559_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_13	phrog_556	60.0	3.7e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0054559_13	585501.HMPREF6123_0831	135.0	2.36e-39	N/A	N/A
structural_annotation	UHGV-0054559_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_14	phrog_8710	128.0	3.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0054559_14	33035.JPJF01000093_gene2249	107.0	4.88e-29	N/A	N/A
structural_annotation	UHGV-0054559_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_15	phrog_541	64.2	2.2e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0054559_15	1298920.KI911353_gene4848	145.0	2.34017e-43	N/A	N/A
PHROG	UHGV-0054559_16	phrog_422	261.1	0	major head protein	head and packaging
UniRef90	UHGV-0054559_16	UniRef90_A0A3D5M0U8	501.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0054559_16	663278.Ethha_1589	375.0	0	N/A	N/A
structural_annotation	UHGV-0054559_16	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_17	phrog_2303	138.1	6.50006e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0054559_17	483218.BACPEC_01156	132.0	2.27e-35	N/A	N/A
structural_annotation	UHGV-0054559_17	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_18	phrog_1048	98.3	1.2e-28	N/A	unknown function
UniRef90	UHGV-0054559_18	UniRef90_A0A350S1T8	142.0	1.17008e-42	N/A	N/A
eggNOG-mapper	UHGV-0054559_18	1280692.AUJL01000027_gene2162	139.0	4.64951e-42	N/A	N/A
Pfam	UHGV-0054559_18	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0054559_18	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0054559_18	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_20	phrog_581	247.7	0	minor head protein	head and packaging
UniRef90	UHGV-0054559_20	UniRef90_A0A413YU28	1079.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0054559_20	1282664.H354_06636	464.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0054559_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0054559_20	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_21	phrog_533	278.1	0	portal protein	head and packaging
UniRef90	UHGV-0054559_21	UniRef90_A0A3D5LTG9	949.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0054559_21	33035.JPJF01000093_gene2257	571.0	0	N/A	N/A
structural_annotation	UHGV-0054559_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0054559_22	K06909	103.3	3.1e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0054559_22	phrog_2	70.7	3.4e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0054559_22	UniRef90_A0A413YU24	909.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0054559_22	1415775.U729_2599	523.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0054559_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0054559_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0054559_22	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0054559_23	K07474	165.5	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0054559_23	phrog_51	166.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0054559_23	UniRef90_A0A356C6K0	327.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0054559_23	1499683.CCFF01000014_gene3916	160.0	0	Terminase small subunit	N/A
Pfam	UHGV-0054559_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0054559_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0054559_23	PF03592,COG3728	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0054559_24	cluster_138565	103.0	7.14e-30	NA	N/A
structural_annotation	UHGV-0054559_24	PF15968	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_25	phrog_10865	40.1	0.000000000027	N/A	unknown function
AcrCatalog	UHGV-0054559_25	cluster_211731	154.0	0	NA	N/A
Pfam	UHGV-0054559_25	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0054559_25	PF20505	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_26	phrog_36	58.0	2.2e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0054559_26	397290.C810_01391	105.0	3.85e-27	N/A	N/A
structural_annotation	UHGV-0054559_26	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_29	phrog_355	89.4	3.4e-26	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054559_29	UniRef90_A0A3D5LSK2	181.0	0	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0054559_29	598467.BrE312_2145	78.6	1.67e-17	N/A	N/A
Pfam	UHGV-0054559_29	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0054559_29	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0054559_30	PF01396	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_31	phrog_625	65.6	5.2e-19	N/A	unknown function
UniRef90	UHGV-0054559_31	UniRef90_A0A413YU40	205.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0054559_31	397290.C810_01502	125.0	1.44e-35	N/A	N/A
structural_annotation	UHGV-0054559_31	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_32	phrog_20593	51.7	0.0000000000000082	N/A	unknown function
eggNOG-mapper	UHGV-0054559_38	478749.BRYFOR_07594	56.6	0.0000000811	N/A	N/A
PHROG	UHGV-0054559_40	phrog_1891	195.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054559_40	UniRef90_A0A3D5LV28	539.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0054559_40	293826.Amet_2599	155.0	1.58347e-43	HNH endonuclease	N/A
Pfam	UHGV-0054559_40	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0054559_40	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_41	phrog_2044	110.1	8.5e-33	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0054559_41	1449126.JQKL01000051_gene3179	77.4	8.8e-18	N/A	N/A
structural_annotation	UHGV-0054559_41	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_42	phrog_17690	107.6	6.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-0054559_42	33035.JPJF01000123_gene2433	95.1	3.62e-23	N/A	N/A
PHROG	UHGV-0054559_43	phrog_7566	96.2	1.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0054559_43	483218.BACPEC_01171	74.3	0.00000000000000106	N/A	N/A
structural_annotation	UHGV-0054559_44	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0054559_45	K03469	67.7	2.6e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0054559_45	phrog_531	61.0	2.6e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054559_45	UniRef90_A0A3B8UHR5	315.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0054559_45	941824.TCEL_01720	77.0	9.26e-16	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0054559_45	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0054559_45	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0054559_45	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_46	phrog_3584	156.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0054559_46	642492.Clole_0725	145.0	4.04e-40	N/A	N/A
structural_annotation	UHGV-0054559_46	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_50	phrog_20040	40.1	0.000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0054559_50	1538644.KO02_12130	105.0	6.07e-29	N/A	N/A
PHROG	UHGV-0054559_51	phrog_478	125.0	3.4e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0054559_51	UniRef90_A0A373Q857	175.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0054559_51	478749.BRYFOR_08526	98.6	9.84e-25	N/A	N/A
PHROG	UHGV-0054559_53	phrog_2328	42.1	0.000000000012	transcriptional repressor	transcription regulation
UniRef90	UHGV-0054559_53	UniRef90_A0A6L5YIZ6	100.0	1.53e-26	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0054559_53	1321782.HMPREF1986_02244	59.3	0.0000000000776	Helix-turn-helix domain	N/A
Pfam	UHGV-0054559_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0054559_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0054559_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0054559_54	K22300	41.6	0.000000000027	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0054559_54	phrog_2967	58.0	1.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0054559_54	UniRef90_R6A4U7	218.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0054559_54	1235798.C817_00620	102.0	3.97e-26	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0054559_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0054559_54	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0054559_54	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_55	phrog_20886	46.8	0.00000000000033	N/A	unknown function
UniRef90	UHGV-0054559_55	UniRef90_A0A660M5N1	55.1	0.0000000174	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0054559_55	1235798.C817_00619	51.2	0.000000343	N/A	N/A
structural_annotation	UHGV-0054559_55	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0054559_56	phrog_3845	68.9	1.1e-19	N/A	unknown function
UniRef90	UHGV-0054559_56	UniRef90_UPI0019563C69	86.3	2.78e-16	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0054559_56	768710.DesyoDRAFT_5205	110.0	1.2e-27	PFAM Tellurite resistance protein TerB	N/A
COG	UHGV-0054559_56	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
PHROG	UHGV-0054559_57	phrog_1847	341.0	0	N/A	unknown function
UniRef90	UHGV-0054559_57	UniRef90_A0A174S171	674.0	0	Membrane-bound metallopeptidase	N/A
eggNOG-mapper	UHGV-0054559_57	483218.BACPEC_01182	591.0	0	T5orf172	N/A
Pfam	UHGV-0054559_57	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0054559_57	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0054559_57	PF13250,NF041454	N/A	N/A	N/A	N/A
KOfam	UHGV-0054559_58	K06400	240.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0054559_58	phrog_95	265.4	0	integrase	integration and excision
UniRef90	UHGV-0054559_58	UniRef90_A0A3B8UKP2	899.0	0	Recombinase domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0054559_58	1256908.HMPREF0373_00206	629.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0054559_58	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0054559_58	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0054559_58	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0054559_58	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A