UHGV-0054628 (vOTU-108577)

Viral Genome: UHGV-0054628

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0054628
vOTU ID	vOTU-108577
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_55711
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9765
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.15
Jumbo phage	No

Genome content
Genome length (bp)	32,882
GC content	49.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	86%
Average CDS length (bps)	451.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0054628_1	411471.SUBVAR_06929	60.8	0.000000000829	ATPase involved in DNA repair	N/A
COG	UHGV-0054628_1	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0054628_2	696281.Desru_1098	58.5	0.00000043	ATPase involved in DNA repair	N/A
COG	UHGV-0054628_2	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0054628_6	phrog_937	53.5	0.0000000000000028	hemolysin	other
eggNOG-mapper	UHGV-0054628_6	1226322.HMPREF1545_00067	164.0	0	N/A	N/A
PHROG	UHGV-0054628_7	phrog_13256	71.3	8.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0054628_7	1226322.HMPREF1545_00132	73.9	1.21e-16	N/A	N/A
KOfam	UHGV-0054628_10	K01447	72.2	1e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0054628_10	phrog_15001	169.6	0	endolysin	lysis
UniRef90	UHGV-0054628_10	UniRef90_A0A1C5N9V0	497.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0054628_10	552398.HMPREF0866_01156	345.0	0	Ami_2	N/A
Pfam	UHGV-0054628_10	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0054628_10	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0054628_10	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0054628_10	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_11	UniRef90_U2R3E6	53.1	0.000000153	KORA domain-containing protein	N/A
structural_annotation	UHGV-0054628_11	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_12	phrog_3754	88.2	4.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0054628_12	1226322.HMPREF1545_00073	143.0	1.44053e-42	N/A	N/A
PHROG	UHGV-0054628_13	phrog_21718	119.8	2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0054628_13	397290.C810_05210	85.5	8.64e-19	N/A	N/A
PHROG	UHGV-0054628_14	phrog_22984	116.0	1.5e-34	N/A	unknown function
PHROG	UHGV-0054628_15	phrog_16490	128.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0054628_15	1226322.HMPREF1545_00076	213.0	0	N/A	N/A
PHROG	UHGV-0054628_16	phrog_20016	193.1	0	N/A	unknown function
UniRef90	UHGV-0054628_16	UniRef90_A0A285PT46	186.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0054628_16	1226322.HMPREF1545_00077	166.0	0	N/A	N/A
structural_annotation	UHGV-0054628_16	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054628_17	PF12510	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_18	UniRef90_A0A7M1RSZ3	85.9	9.86e-18	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0054628_18	1378168.N510_03079	96.3	6.51e-22	N/A	N/A
KOfam	UHGV-0054628_19	K14059	107.7	1.9e-31	int; integrase	N/A
PHROG	UHGV-0054628_19	phrog_1	135.4	5.70001e-40	integrase	integration and excision
UniRef90	UHGV-0054628_19	UniRef90_UPI00195CC1EE	608.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0054628_19	1235835.C814_03141	210.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0054628_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0054628_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0054628_19	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_20	phrog_33872	51.4	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0054628_20	693746.OBV_19740	48.9	0.00000772	N/A	N/A
eggNOG-mapper	UHGV-0054628_21	357809.Cphy_3527	99.4	9.06e-27	N/A	N/A
structural_annotation	UHGV-0054628_21	PF02701	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_23	phrog_87	76.8	2.4e-22	metallo-protease	other
UniRef90	UHGV-0054628_23	UniRef90_UPI001899699D	185.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0054628_23	1007096.BAGW01000011_gene2354	178.0	0	IrrE N-terminal-like domain	N/A
COG	UHGV-0054628_23	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0054628_23	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_24	phrog_8	47.2	0.00000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-0054628_24	UniRef90_A0A845R7R6	154.0	1.4013e-45	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0054628_24	1507.HMPREF0262_00424	68.2	0.000000000000375	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0054628_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0054628_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0054628_24	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_25	UniRef90_A0A845R4W0	119.0	1.49e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0054628_25	742738.HMPREF9460_02486	73.9	1.78e-16	N/A	N/A
structural_annotation	UHGV-0054628_25	TIGR03070	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_26	UniRef90_UPI000F0633F9	87.0	3.73e-21	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0054628_26	693746.OBV_43260	78.2	2.06e-18	N/A	N/A
structural_annotation	UHGV-0054628_26	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054628_30	PF13560	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_34	phrog_124	122.8	2.9e-36	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054628_34	UniRef90_UPI0009EE88A2	278.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0054628_34	445972.ANACOL_00146	216.0	0	AAA domain	N/A
Pfam	UHGV-0054628_34	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0054628_34	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0054628_34	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_35	UniRef90_A0A2Z4QA33	141.0	1.14e-38	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-0054628_35	718252.FP2_01050	146.0	1.68002e-41	N/A	N/A
structural_annotation	UHGV-0054628_35	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_37	UniRef90_UPI00082E7ADF	183.0	0	N/A	N/A
Pfam	UHGV-0054628_37	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0054628_37	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_38	phrog_3490	157.5	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054628_38	UniRef90_A0A810Q663	330.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0054628_38	373903.Hore_03490	134.0	9.37e-38	ERCC4 domain	N/A
Pfam	UHGV-0054628_38	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0054628_38	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0054628_39	K02316	64.3	2.2e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0054628_39	phrog_11992	124.9	7.6e-37	N/A	unknown function
UniRef90	UHGV-0054628_39	UniRef90_A0A810QG37	295.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0054628_39	742738.HMPREF9460_02494	165.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0054628_39	drt-UG29	57.6	1.3e-16	DRT	DRT
Pfam	UHGV-0054628_39	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0054628_39	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0054628_39	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_40	phrog_8841	474.9	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054628_40	UniRef90_UPI001D033FF1	756.0	0	N/A	N/A
eggNOG-mapper	UHGV-0054628_40	742738.HMPREF9460_02495	475.0	0	N/A	N/A
Pfam	UHGV-0054628_40	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0054628_40	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0054628_40	COG5519	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_42	UniRef90_A0A4D7ANR2	80.1	1.52e-17	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0054628_42	1226322.HMPREF1545_00021	56.6	0.00000000569	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-0054628_42	PF14354,NF007260	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_44	UniRef90_UPI001C3A10B1	67.0	0.00000000000515	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0054628_44	1226322.HMPREF1545_00023	63.2	0.0000000000343	N/A	N/A
PHROG	UHGV-0054628_46	phrog_25732	74.2	1.4e-21	N/A	unknown function
UniRef90	UHGV-0054628_46	UniRef90_A0A7G9WJW0	60.8	0.00000000357	Lar family restriction alleviation protein	N/A
PHROG	UHGV-0054628_52	phrog_22543	48.0	0.00000000000023	N/A	unknown function
PHROG	UHGV-0054628_54	phrog_801	92.2	8.1e-27	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0054628_54	UniRef90_A0A1C6IRL8	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-0054628_54	551790.B5BTW0_9CAUD	64.3	0.0000000000553	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0054628_54	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0054628_54	PF18909	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054628_57	UniRef90_A0A8J6J3G6	113.0	9.63e-32	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0054628_57	1226322.HMPREF1545_00039	74.7	3.41e-17	sequence-specific DNA binding	N/A
Pfam	UHGV-0054628_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0054628_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0054628_58	phrog_309	182.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-0054628_58	UniRef90_A0A6G3M4V4	228.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0054628_58	1408437.JNJN01000045_gene597	188.0	0	HNH endonuclease	N/A
Pfam	UHGV-0054628_58	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0054628_58	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0054628_58	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0054628_59	K06909	381.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0054628_59	phrog_5653	158.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0054628_59	UniRef90_A0A2U1BEH4	823.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0054628_59	33035.JPJF01000106_gene3136	463.0	0	Terminase small subunit	N/A
Pfam	UHGV-0054628_59	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0054628_59	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0054628_59	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0054628_59	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0054628_59	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_60	phrog_533	396.6	0	portal protein	head and packaging
UniRef90	UHGV-0054628_60	UniRef90_A0A1C5N775	920.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0054628_60	1226322.HMPREF1545_00044	749.0	0	N/A	N/A
Pfam	UHGV-0054628_60	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0054628_60	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_61	phrog_581	286.6	0	minor head protein	head and packaging
UniRef90	UHGV-0054628_61	UniRef90_A0A1C5N7V1	692.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0054628_61	1226322.HMPREF1545_00046	419.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0054628_61	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0054628_61	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0054628_61	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054628_61	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0054628_62	phrog_2303	61.6	1.7e-17	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0054628_62	1226322.HMPREF1545_00049	245.0	0	N/A	N/A
PHROG	UHGV-0054628_63	phrog_10	174.6	0	major head protein	head and packaging
UniRef90	UHGV-0054628_63	UniRef90_U2SBS0	622.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0054628_63	1226322.HMPREF1545_00050	622.0	0	Phage capsid family	N/A
Pfam	UHGV-0054628_63	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0054628_63	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0054628_63	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0054628_63	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A