UHGV-0054834 (vOTU-113703)

Viral Genome: UHGV-0054834

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0054834
vOTU ID	vOTU-113703
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_53950
Associated BioSample	SAMEA2163583
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.05 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.12
Jumbo phage	No

Genome content
Genome length (bp)	29,746
GC content	45.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	93%
Average CDS length (bps)	641.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0054834_1	phrog_10091	113.0	1.9e-33	holin	lysis
UniRef90	UHGV-0054834_1	UniRef90_D7GNX3	160.0	0	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-0054834_1	428127.EUBDOL_01206	125.0	2.2e-36	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0054834_1	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0054834_1	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0054834_1	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054834_1	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0054834_2	K03749	70.8	2.5e-20	dedD; DedD protein	N/A
PHROG	UHGV-0054834_2	phrog_20388	381.1	0	endolysin	lysis
UniRef90	UHGV-0054834_2	UniRef90_A0A1C5N059	537.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0054834_2	665956.HMPREF1032_00684	390.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0054834_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0054834_2	PF05036	N/A	N/A	SPOR domain	SPOR
Pfam	UHGV-0054834_2	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0054834_2	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0054834_2	PF05036,PF08230,PF01510,MF_04111,MF_02022,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_3	phrog_1863	68.7	5.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0054834_3	718252.FP2_04900	99.8	1.99e-26	N/A	N/A
PHROG	UHGV-0054834_6	phrog_6616	269.9	0	tail protein	tail
eggNOG-mapper	UHGV-0054834_6	445971.ANASTE_00088	157.0	1.39e-36	N/A	N/A
Pfam	UHGV-0054834_6	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0054834_6	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_7	phrog_1194	105.9	2.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0054834_7	1400520.LFAB_05290	82.8	8.36e-19	N/A	N/A
Pfam	UHGV-0054834_7	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0054834_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_8	phrog_1535	161.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0054834_8	UniRef90_A0A1C6L0H4	1222.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0054834_8	1121866.AUGK01000003_gene1437	293.0	0	phage tail tape measure protein	N/A
COG	UHGV-0054834_8	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0054834_9	1121333.JMLH01000047_gene1011	85.5	2.78e-19	N/A	N/A
UniRef90	UHGV-0054834_10	UniRef90_A0A1C0ADY7	178.0	0	N/A	N/A
eggNOG-mapper	UHGV-0054834_10	1211844.CBLM010000023_gene988	91.7	1.31e-22	N/A	N/A
Pfam	UHGV-0054834_10	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0054834_10	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_11	phrog_158	59.5	7.3e-17	major tail protein	tail
UniRef90	UHGV-0054834_11	UniRef90_D7GNW1	266.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0054834_11	1232453.BAIF02000058_gene1634	100.0	2.93e-25	N/A	N/A
Pfam	UHGV-0054834_11	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0054834_11	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_12	phrog_78	41.1	0.000000000024	tail terminator	connector
eggNOG-mapper	UHGV-0054834_12	1121333.JMLH01000047_gene1014	56.2	0.0000000438	N/A	N/A
structural_annotation	UHGV-0054834_12	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0054834_13	UniRef90_UPI001BBD4500	65.1	0.000000000499	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0054834_13	1298920.KI911353_gene2654	61.6	0.00000000202	N/A	N/A
eggNOG-mapper	UHGV-0054834_14	1121866.AUGK01000003_gene1432	94.0	8.99e-23	N/A	N/A
UniRef90	UHGV-0054834_15	UniRef90_D7GNV9	206.0	0	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-0054834_15	1298920.KI911353_gene2658	56.2	0.00000000826	N/A	N/A
Pfam	UHGV-0054834_15	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0054834_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_16	phrog_544	83.8	1.8e-24	major head protein	head and packaging
UniRef90	UHGV-0054834_16	UniRef90_A0A0R2LC66	59.7	0.00000132	Major head protein	N/A
eggNOG-mapper	UHGV-0054834_16	428127.EUBDOL_01555	254.0	0	N/A	N/A
structural_annotation	UHGV-0054834_16	PF06673,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_18	phrog_64	243.1	0	portal protein	head and packaging
UniRef90	UHGV-0054834_18	UniRef90_A0A1C5MXM2	898.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0054834_18	1121866.AUGK01000003_gene1429	432.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0054834_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0054834_18	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_19	phrog_38	208.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0054834_19	UniRef90_A0A810QA10	553.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0054834_19	1298920.KI911353_gene2682	502.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0054834_19	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0054834_19	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054834_19	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054834_20	PF19190,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0054834_21	K06400	52.0	7.6e-23	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0054834_21	phrog_125	46.4	0.00000000000076	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054834_21	UniRef90_A0A1C5MXG4	167.0	0	Transposon Tn3 resolvase	N/A
eggNOG-mapper	UHGV-0054834_21	697329.Rumal_3466	80.9	6.27e-17	resolvase	N/A
Pfam	UHGV-0054834_21	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0054834_21	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
UniRef90	UHGV-0054834_23	UniRef90_D7GNV4	118.0	1.29e-33	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0054834_23	1235800.C819_01469	99.4	9.19e-27	N/A	N/A
Pfam	UHGV-0054834_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0054834_23	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0054834_24	K14060	131.4	8.4e-39	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0054834_24	phrog_125	161.4	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054834_24	UniRef90_A0A3D0LYX8	214.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0054834_24	641107.CDLVIII_3188	204.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0054834_24	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0054834_24	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0054834_24	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054834_26	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0054834_27	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_28	phrog_6244	41.0	0.000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0054834_28	1354300.AUQY01000005_gene215	113.0	7.62e-32	N/A	N/A
PHROG	UHGV-0054834_31	phrog_4264	48.0	0.00000000000023	N/A	unknown function
UniRef90	UHGV-0054834_33	UniRef90_UPI001C012D23	120.0	1.68e-30	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0054834_33	536233.CLO_1560	53.1	0.00000253	DNA-packaging protein gp3	N/A
PHROG	UHGV-0054834_34	phrog_13414	73.8	1.3e-21	N/A	unknown function
PHROG	UHGV-0054834_35	phrog_16244	46.8	0.00000000000054	N/A	unknown function
eggNOG-mapper	UHGV-0054834_36	397291.C804_00971	60.5	0.000000000401	N/A	N/A
structural_annotation	UHGV-0054834_36	PF06107,COG4481	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_39	phrog_424	110.6	1.6e-32	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0054834_39	UniRef90_R6PFX4	473.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-0054834_39	32024.JMTI01000031_gene58	85.1	1.21e-16	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-0054834_39	SspD_00001	57.6	4.8e-16	SspD	SSP
COG	UHGV-0054834_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0054834_39	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_40	phrog_1156	307.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0054834_40	UniRef90_D7GNU9	972.0	0	Phage/plasmid primase, P4 family, C-terminal domain	N/A
eggNOG-mapper	UHGV-0054834_40	649747.HMPREF0083_00553	310.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0054834_40	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0054834_40	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0054834_40	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0054834_40	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0054834_40	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0054834_40	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_41	phrog_24658	113.6	1.1e-33	N/A	unknown function
UniRef90	UHGV-0054834_41	UniRef90_R6HTM1	173.0	0	Gp50	N/A
KOfam	UHGV-0054834_42	K07171	70.5	1.8e-20	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0054834_42	phrog_1936	112.1	3e-33	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0054834_42	UniRef90_A0A1C5MWG4	302.0	0	mRNA interferase MazF4	N/A
eggNOG-mapper	UHGV-0054834_42	411461.DORFOR_01157	114.0	9.42e-30	N/A	N/A
Pfam	UHGV-0054834_42	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0054834_42	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0054834_42	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0054834_43	phrog_757	100.1	1.6e-29	DNA methyltransferase	other
UniRef90	UHGV-0054834_43	UniRef90_A0A3R6E579	193.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0054834_43	457398.HMPREF0326_03026	120.0	2.69e-31	C-5 cytosine-specific DNA methylase	N/A
structural_annotation	UHGV-0054834_43	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A