UHGV-0055566 (vOTU-008530)

Viral Genome: UHGV-0055566

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0055566
vOTU ID	vOTU-008530
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_51086
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.96
Jumbo phage	No

Genome content
Genome length (bp)	33,832
GC content	43.39%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	92%
Average CDS length (bps)	679.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0055566_1	phrog_1129	75.0	7e-22	holin	lysis
UniRef90	UHGV-0055566_1	UniRef90_A0A416AFW1	158.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0055566_1	411461.DORFOR_00721	99.4	3.11e-26	N/A	N/A
Pfam	UHGV-0055566_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0055566_1	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0055566_2	K02234	45.9	0.00000000000002	cobW; cobalamin biosynthesis protein CobW	N/A
UniRef90	UHGV-0055566_2	UniRef90_R5NS11	639.0	0	CobW/P47K family protein	N/A
eggNOG-mapper	UHGV-0055566_2	411489.CLOL250_01912	541.0	0	N/A	N/A
Pfam	UHGV-0055566_2	PF02492	N/A	N/A	CobW/HypB/UreG, nucleotide-binding domain	cobW
COG	UHGV-0055566_2	COG0523	N/A	N/A	Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family	N/A
PHROG	UHGV-0055566_3	phrog_19291	84.0	9.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0055566_3	1232449.BAHV02000021_gene1072	119.0	2.13e-26	N/A	N/A
structural_annotation	UHGV-0055566_3	PF02191,COG3823	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_4	phrog_23052	343.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0055566_4	483218.BACPEC_01320	315.0	0	N/A	N/A
structural_annotation	UHGV-0055566_4	PF14879,PF05113,NF033848,NF033147,COG3500,COG4935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0055566_5	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_6	phrog_1272	386.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0055566_6	UniRef90_A0A373ZD47	1067.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0055566_6	180332.JTGN01000004_gene2272	308.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0055566_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0055566_6	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0055566_6	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0055566_6	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_7	phrog_709	53.5	4.6e-16	N/A	unknown function
structural_annotation	UHGV-0055566_7	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_8	phrog_88	174.3	0	major tail protein	tail
UniRef90	UHGV-0055566_8	UniRef90_A0A373ZCY5	379.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0055566_8	663278.Ethha_1843	195.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0055566_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0055566_8	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_9	phrog_78	41.1	0.000000000035	tail terminator	connector
eggNOG-mapper	UHGV-0055566_9	698758.AXY_02180	72.4	0.00000000000000364	N/A	N/A
structural_annotation	UHGV-0055566_9	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0055566_10	UniRef90_UPI00189E13A9	215.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0055566_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0055566_11	phrog_1951	104.8	4e-31	head-tail adaptor	connector
UniRef90	UHGV-0055566_11	UniRef90_A0A3R6UXW7	215.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0055566_11	411471.SUBVAR_05854	75.5	2.25e-16	N/A	N/A
NCBIFam	UHGV-0055566_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0055566_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_12	phrog_2550	72.7	3.1e-21	N/A	unknown function
UniRef90	UHGV-0055566_12	UniRef90_UPI0008717716	122.0	2.88e-34	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0055566_12	1226322.HMPREF1545_00117	75.5	1.25e-16	N/A	N/A
structural_annotation	UHGV-0055566_12	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_13	phrog_10	151.6	4.2039e-45	major head protein	head and packaging
UniRef90	UHGV-0055566_13	UniRef90_A0A373ZD06	678.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0055566_13	642492.Clole_0744	376.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0055566_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0055566_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0055566_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0055566_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0055566_14	K06904	154.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0055566_14	phrog_80	172.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0055566_14	UniRef90_A0A417PEP5	394.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0055566_14	913865.DOT_5634	236.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0055566_14	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0055566_14	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0055566_14	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0055566_14	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_15	phrog_12	168.3	0	portal protein	head and packaging
UniRef90	UHGV-0055566_15	UniRef90_A0A373ZD56	763.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0055566_15	1232446.BAIE02000002_gene824	392.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0055566_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0055566_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0055566_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0055566_15	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_16	phrog_9	310.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0055566_16	UniRef90_A0A373ZFM8	1141.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0055566_16	1121428.DESHY_20134___1	763.0	0	Phage Terminase	N/A
Pfam	UHGV-0055566_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0055566_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0055566_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0055566_16	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_17	phrog_361	71.1	1.5e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0055566_17	UniRef90_R5V087	125.0	9.19e-35	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0055566_17	1033744.CAEL01000029_gene1286	82.8	1.55e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-0055566_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0055566_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0055566_18	K07451	51.2	0.000000000000022	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0055566_18	phrog_119	86.6	3.1e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055566_18	UniRef90_UPI00189E7D6D	202.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0055566_18	358681.BBR47_29120	104.0	7.11e-28	HNH nucleases	N/A
Pfam	UHGV-0055566_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0055566_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0055566_18	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_19	phrog_199	94.7	9.3e-28	holin	lysis
UniRef90	UHGV-0055566_19	UniRef90_A0A3R6TFD1	248.0	0	Holin	N/A
eggNOG-mapper	UHGV-0055566_19	742740.HMPREF9474_02333	247.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0055566_19	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0055566_19	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0055566_19	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0055566_19	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_21	phrog_11237	98.4	6.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0055566_21	411461.DORFOR_01161	110.0	1.65e-29	N/A	N/A
KOfam	UHGV-0055566_22	K01448	143.7	1.49939e-42	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0055566_22	phrog_435	151.4	7.00649e-45	endolysin	lysis
UniRef90	UHGV-0055566_22	UniRef90_A0A3R6ZZA0	500.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0055566_22	1408437.JNJN01000040_gene194	229.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0055566_22	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0055566_22	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0055566_22	PF01520,PF18342,MF_00562,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0055566_23	UniRef90_A0A174QL97	75.5	8.97e-17	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0055566_23	610130.Closa_1388	99.0	6.69e-27	N/A	N/A
structural_annotation	UHGV-0055566_23	NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_25	phrog_7566	109.5	1.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0055566_25	411459.RUMOBE_00948	105.0	6.14e-28	N/A	N/A
PHROG	UHGV-0055566_28	phrog_24368	51.5	0.000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0055566_28	1235792.C808_00071	52.0	0.000000919	N/A	N/A
PHROG	UHGV-0055566_29	phrog_15077	106.0	6.8e-31	N/A	unknown function
UniRef90	UHGV-0055566_29	UniRef90_A0A3A6HZA9	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0055566_29	1280698.AUJS01000007_gene1019	169.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-0055566_29	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_30	phrog_8470	234.5	0	N/A	unknown function
UniRef90	UHGV-0055566_30	UniRef90_UPI001D0E6B3F	1389.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0055566_30	411902.CLOBOL_05697	521.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0055566_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0055566_30	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_31	phrog_4433	58.5	2.9e-19	N/A	unknown function
UniRef90	UHGV-0055566_31	UniRef90_W0HPP5	69.3	0.0000000000352	C-type lectin family member (2D393) / c-type lectin family member (2D393)	N/A
eggNOG-mapper	UHGV-0055566_31	2342.SOPEG_2455	69.3	0.0000000000059	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0055566_31	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0055566_31	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0055566_32	411902.CLOBOL_05699	129.0	7.4e-36	N/A	N/A
KOfam	UHGV-0055566_33	K03469	42.9	0.000000000009	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0055566_33	phrog_531	41.2	0.000000000033	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055566_33	UniRef90_A0A417PKX1	302.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0055566_33	1116472.MGMO_8c00720	63.2	0.000000000169	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0055566_33	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0055566_33	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0055566_33	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_34	phrog_3584	133.3	1.7e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0055566_34	483218.BACPEC_01173	231.0	0	N/A	N/A
structural_annotation	UHGV-0055566_34	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0055566_36	UniRef90_R5VU56	121.0	1.29e-33	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-0055566_36	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-0055566_37	phrog_2668	47.2	0.00000000000025	N/A	unknown function
UniRef90	UHGV-0055566_37	UniRef90_UPI0018AB8424	93.2	1.73e-20	restriction endonuclease subunit S	N/A
eggNOG-mapper	UHGV-0055566_37	1201292.DR75_1653	65.5	0.0000000000207	Type I restriction modification DNA specificity domain	N/A
PADLOC	UHGV-0055566_37	Specificity_I_00134	41.2	0.000000000041	Type I specificity subunit	RM
structural_annotation	UHGV-0055566_37	PF01420,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-0055566_38	K03427	199.3	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0055566_38	phrog_6380	330.5	0	DNA methyltransferase	other
UniRef90	UHGV-0055566_38	UniRef90_UPI001D0F1512	766.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0055566_38	592010.GCWU000182_001448	273.0	0	HsdM N-terminal domain	N/A
PADLOC	UHGV-0055566_38	MTase_I_00005	205.2	0	Type I methyltransferase	RM
Pfam	UHGV-0055566_38	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0055566_38	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0055566_38	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0055566_43	K22300	67.6	2.8e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0055566_43	phrog_8	53.5	0.0000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0055566_43	UniRef90_UPI00189D7AB4	252.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0055566_43	742741.HMPREF9475_00400	169.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0055566_43	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0055566_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0055566_43	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0055566_44	K23779	53.1	0.0000000000000076	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0055566_44	UniRef90_UPI00189ED8FE	127.0	2.77e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0055566_44	411468.CLOSCI_01455	97.4	3.73e-26	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0055566_44	retron_type_VI_hth_cluster2_1	42.0	0.000000000026	N/A	Retron
Pfam	UHGV-0055566_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0055566_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0055566_45	K02342	168.2	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0055566_45	phrog_192	154.6	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0055566_45	UniRef90_UPI0018A10D95	762.0	0	3'-5' exonuclease	N/A
eggNOG-mapper	UHGV-0055566_45	1203606.HMPREF1526_00999	205.0	0	EXOIII	N/A
PADLOC	UHGV-0055566_45	cd06127	130.6	8.7e-39	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0055566_45	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0055566_45	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0055566_45	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-0055566_46	K14059	158.1	0	int; integrase	N/A
PHROG	UHGV-0055566_46	phrog_1	177.1	0	integrase	integration and excision
UniRef90	UHGV-0055566_46	UniRef90_UPI00189E922D	729.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0055566_46	1280698.AUJS01000007_gene999	222.0	0	Phage integrase family	N/A
Pfam	UHGV-0055566_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0055566_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0055566_46	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A