UHGV-0056075 (vOTU-134350)

Viral Genome: UHGV-0056075

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0056075
vOTU ID	vOTU-134350
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_65849
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.78 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9762
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.55
Jumbo phage	No

Genome content
Genome length (bp)	29,126
GC content	39.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	92%
Average CDS length (bps)	720.32
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0056075_1	K14059	103.2	4e-30	int; integrase	N/A
PHROG	UHGV-0056075_1	phrog_1	123.9	1.7e-36	integrase	integration and excision
UniRef90	UHGV-0056075_1	UniRef90_A0A1G5CL52	802.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0056075_1	693746.OBV_41260	181.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0056075_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0056075_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0056075_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0056075_2	1232447.BAHW02000014_gene830	52.4	0.000000561	N/A	N/A
PHROG	UHGV-0056075_4	phrog_1914	149.4	2.10195e-44	N/A	unknown function
UniRef90	UHGV-0056075_4	UniRef90_A0A373XNL4	346.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0056075_4	1160721.RBI_I01604	171.0	0	N/A	N/A
Pfam	UHGV-0056075_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0056075_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0056075_4	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056075_5	UniRef90_A0A373XLN2	276.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0056075_5	1235793.C809_00679	99.0	5.83e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0056075_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0056075_5	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056075_6	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0056075_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0056075_6	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0056075_8	K00390	91.8	7.4e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0056075_8	phrog_424	122.5	3.3e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0056075_8	UniRef90_UPI001C034617	582.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0056075_8	1408437.JNJN01000032_gene2312	332.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0056075_8	BrxP_00001	78.9	4.1e-23	BrxP	BREX
Pfam	UHGV-0056075_8	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0056075_8	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0056075_8	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056075_9	UniRef90_UPI000E4DC4DA	114.0	1.04e-29	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0056075_9	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_10	phrog_6058	43.1	0.0000000000049	N/A	unknown function
structural_annotation	UHGV-0056075_10	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0056075_13	K03497	157.4	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0056075_13	phrog_6218	244.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056075_13	UniRef90_UPI000E47CAB6	821.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0056075_13	1160721.RBI_I01596	234.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0056075_13	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0056075_13	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0056075_13	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0056075_13	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0056075_14	K03427	214.9	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0056075_14	phrog_6380	399.6	0	DNA methyltransferase	other
UniRef90	UHGV-0056075_14	UniRef90_A0A356CYE0	810.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0056075_14	1201292.DR75_1654	337.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0056075_14	MTase_I_00005	236.7	0	Type I methyltransferase	RM
Pfam	UHGV-0056075_14	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0056075_14	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0056075_14	PF02384,PF01420,MF_01872,TIGR00497,COG0286,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-0056075_15	K22300	49.7	0.000000000000081	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0056075_15	phrog_8	61.2	2.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0056075_15	UniRef90_A0A374N9T4	106.0	4.22e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0056075_15	997346.HMPREF9374_1157	67.0	0.00000000000124	sequence-specific DNA binding	N/A
PADLOC	UHGV-0056075_15	retron_type_VI_hth_cluster2_1	40.0	0.00000000012	N/A	Retron
Pfam	UHGV-0056075_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0056075_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0056075_15	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_16	phrog_24518	88.7	6.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0056075_16	1519439.JPJG01000077_gene922	104.0	2.28e-25	N/A	N/A
PHROG	UHGV-0056075_17	phrog_824	144.8	2.60642e-43	N/A	unknown function
UniRef90	UHGV-0056075_17	UniRef90_A0A3D3D6C6	247.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0056075_17	397288.C806_00096	159.0	0	VRR_NUC	N/A
Pfam	UHGV-0056075_17	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0056075_17	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_20	phrog_3584	151.2	7.00649e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0056075_20	1235800.C819_00515	70.9	0.00000000000973	N/A	N/A
structural_annotation	UHGV-0056075_20	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056075_21	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_22	phrog_119	70.8	2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056075_22	UniRef90_A0A412ULY9	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0056075_22	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-0056075_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0056075_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0056075_23	phrog_5110	83.8	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0056075_23	UniRef90_A0A4U7JDP0	114.0	8.67e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0056075_23	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-0056075_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0056075_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_24	phrog_9	303.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0056075_24	UniRef90_A0A412UM03	1023.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0056075_24	86416.Clopa_0337	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0056075_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0056075_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0056075_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0056075_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_25	phrog_12	100.5	1.4e-29	portal protein	head and packaging
UniRef90	UHGV-0056075_25	UniRef90_A0A412ULV9	743.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0056075_25	1415774.U728_1254	261.0	0	Phage portal protein	N/A
Pfam	UHGV-0056075_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0056075_25	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0056075_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0056075_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0056075_26	K01358	139.1	4.39994e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0056075_26	phrog_94	205.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0056075_26	UniRef90_A0A412ULU1	470.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0056075_26	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0056075_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0056075_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0056075_26	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_27	phrog_10	130.3	1.9e-38	major head protein	head and packaging
UniRef90	UHGV-0056075_27	UniRef90_A0A412ULW9	734.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0056075_27	1211817.CCAT010000053_gene2132	321.0	0	Phage capsid family	N/A
Pfam	UHGV-0056075_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0056075_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0056075_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0056075_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_28	phrog_749	54.8	0.0000000000000015	N/A	unknown function
UniRef90	UHGV-0056075_28	UniRef90_A0A1G5CMX8	108.0	1.51e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0056075_28	1211817.CCAT010000053_gene2133	58.2	0.00000000117	N/A	N/A
PHROG	UHGV-0056075_29	phrog_19734	74.4	1.3e-21	N/A	unknown function
UniRef90	UHGV-0056075_29	UniRef90_UPI00057FE645	59.7	0.00000000312	phage head closure protein	N/A
eggNOG-mapper	UHGV-0056075_29	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
structural_annotation	UHGV-0056075_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0056075_30	879305.HMPREF9290_0134	53.5	0.000000134	N/A	N/A
structural_annotation	UHGV-0056075_30	PF05657,TIGR04412	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056075_31	UniRef90_UPI000E5564A4	275.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0056075_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0056075_31	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_32	phrog_88	69.7	4.2e-20	major tail protein	tail
UniRef90	UHGV-0056075_32	UniRef90_A0A1G5CNS8	150.0	2.0501e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0056075_32	1235790.C805_01798	61.6	0.00000000597	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0056075_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0056075_32	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056075_33	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0056075_34	K19533	64.1	3.2e-20	SYCP1; synaptonemal complex protein 1	N/A
PHROG	UHGV-0056075_34	phrog_1272	253.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0056075_34	UniRef90_A0A412ULX0	1651.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0056075_34	588581.Cpap_1264	198.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0056075_34	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0056075_34	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0056075_34	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_35	phrog_33	69.3	9.3e-20	distal tail protein Dit	tail
UniRef90	UHGV-0056075_35	UniRef90_A0A1G5CPA2	129.0	1.01e-32	Phage-related protein	N/A
eggNOG-mapper	UHGV-0056075_35	1160721.RBI_I01575	84.3	1.32e-16	Phage tail protein	N/A
COG	UHGV-0056075_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0056075_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0056075_36	phrog_1067	102.2	5.6e-30	minor head protein	head and packaging
UniRef90	UHGV-0056075_36	UniRef90_A0A1G5CPD2	130.0	8.92e-31	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0056075_36	1462527.CCDM010000003_gene3730	74.7	0.0000000000162	gp58-like protein	N/A
NCBIFam	UHGV-0056075_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0056075_36	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056075_36	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056075_37	PF10651	N/A	N/A	N/A	N/A