UHGV-0056169 (vOTU-169711)

Viral Genome: UHGV-0056169

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0056169
vOTU ID	vOTU-169711
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_59726
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.38 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9506
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.49
Jumbo phage	No

Genome content
Genome length (bp)	38,724
GC content	54.59%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	92%
Average CDS length (bps)	658.67
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0056169_1	411462.DORLON_00771	74.3	0.000000000000573	N/A	N/A
PHROG	UHGV-0056169_3	phrog_18725	44.2	0.000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0056169_3	1120746.CCNL01000014_gene2212	99.4	5.26e-25	N/A	N/A
PHROG	UHGV-0056169_4	phrog_13879	279.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0056169_4	1120746.CCNL01000014_gene2107	332.0	0	N/A	N/A
structural_annotation	UHGV-0056169_4	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_5	phrog_1194	68.1	1.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0056169_5	1120746.CCNL01000014_gene2106	161.0	0	N/A	N/A
structural_annotation	UHGV-0056169_5	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_6	phrog_1535	229.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0056169_6	665956.HMPREF1032_03628	191.0	0	domain protein	N/A
COG	UHGV-0056169_6	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_7	phrog_706	102.4	4.4e-30	N/A	unknown function
UniRef90	UHGV-0056169_7	UniRef90_UPI0013141117	227.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0056169_7	665956.HMPREF1032_03058	207.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0056169_7	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0056169_7	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_8	phrog_11299	92.3	5.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0056169_8	665956.HMPREF1032_03059	119.0	2.6e-32	N/A	N/A
structural_annotation	UHGV-0056169_8	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_9	phrog_3099	152.8	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0056169_9	411471.SUBVAR_06936	257.0	0	N/A	N/A
structural_annotation	UHGV-0056169_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0056169_10	693746.OBV_18140	180.0	0	N/A	N/A
structural_annotation	UHGV-0056169_10	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_11	phrog_556	47.3	0.00000000000038	minor head protein	head and packaging
UniRef90	UHGV-0056169_11	UniRef90_UPI001967B4B3	158.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0056169_11	999411.HMPREF1092_03318	52.4	0.00000054	Minor capsid protein	N/A
Pfam	UHGV-0056169_11	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0056169_11	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056169_12	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_15	phrog_422	213.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0056169_15	693746.OBV_18090	334.0	0	N/A	N/A
structural_annotation	UHGV-0056169_15	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_16	phrog_194	81.4	1.5e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0056169_16	UniRef90_A0A4R1QTK7	192.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0056169_16	411471.SUBVAR_06994	219.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0056169_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0056169_16	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_19	phrog_581	187.9	0	minor head protein	head and packaging
UniRef90	UHGV-0056169_19	UniRef90_UPI00196795ED	350.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0056169_19	411471.SUBVAR_06995	544.0	0	N/A	N/A
Pfam	UHGV-0056169_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0056169_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056169_19	PF06152,PF07737,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_20	phrog_533	172.4	0	portal protein	head and packaging
UniRef90	UHGV-0056169_20	UniRef90_D1PRG7	596.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0056169_20	411471.SUBVAR_06996	596.0	0	N/A	N/A
structural_annotation	UHGV-0056169_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0056169_22	K06909	377.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0056169_22	phrog_3717	150.2	1.12104e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0056169_22	UniRef90_A0A6N8H4Y1	809.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0056169_22	411471.SUBVAR_06998	718.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0056169_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0056169_22	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0056169_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0056169_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0056169_22	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0056169_24	K02601	63.3	4.1e-18	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-0056169_24	phrog_6386	96.5	2.5e-28	transcription antiterminator	transcription regulation
UniRef90	UHGV-0056169_24	UniRef90_A0A6N8H0F4	319.0	0	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-0056169_24	411471.SUBVAR_07000	208.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-0056169_24	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0056169_24	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0056169_24	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_25	phrog_426	95.4	7.6e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0056169_25	UniRef90_A0A6N8H2N8	366.0	0	N/A	N/A
eggNOG-mapper	UHGV-0056169_25	411471.SUBVAR_07001	322.0	0	N/A	N/A
Pfam	UHGV-0056169_25	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0056169_25	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_26	phrog_25462	97.8	7.7e-29	N/A	unknown function
UniRef90	UHGV-0056169_26	UniRef90_A0A6N8H1D3	180.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0056169_26	742733.HMPREF9469_02885	87.8	5.34e-21	N/A	N/A
structural_annotation	UHGV-0056169_26	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_27	phrog_462	41.6	0.0000000000000013	lipoprotein	other
eggNOG-mapper	UHGV-0056169_27	411471.SUBVAR_07003	102.0	2.81e-26	N/A	N/A
PHROG	UHGV-0056169_28	phrog_836	55.9	5.1e-16	late transcriptional activator	transcription regulation
UniRef90	UHGV-0056169_28	UniRef90_A0A6N8H2N1	195.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0056169_28	411471.SUBVAR_07004	137.0	8.19003e-41	Mor transcription activator	N/A
Pfam	UHGV-0056169_28	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0056169_28	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0056169_28	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_29	phrog_286	72.1	1e-20	N/A	unknown function
UniRef90	UHGV-0056169_29	UniRef90_A0A6N8H086	259.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0056169_29	411471.SUBVAR_07005	226.0	0	N/A	N/A
Pfam	UHGV-0056169_29	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0056169_29	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_31	phrog_491	99.5	3.3e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056169_31	UniRef90_A0A6N3F7T2	224.0	0	Bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-0056169_31	411471.SUBVAR_07006	224.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0056169_31	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-0056169_31	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-0056169_31	PF07352,COG4396	N/A	N/A	N/A	N/A
PHROG	UHGV-0056169_32	phrog_5671	94.4	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0056169_32	293826.Amet_0399	108.0	9.28e-29	N/A	N/A
KOfam	UHGV-0056169_34	K07132	112.1	5.3e-33	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0056169_34	phrog_296	151.0	9.80909e-45	DNA transposition protein	integration and excision
UniRef90	UHGV-0056169_34	UniRef90_A0A6N8H4X2	538.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0056169_34	411471.SUBVAR_07009	516.0	0	AAA domain	N/A
Pfam	UHGV-0056169_34	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0056169_34	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
PHROG	UHGV-0056169_35	phrog_310	348.1	0	transposase	integration and excision
UniRef90	UHGV-0056169_35	UniRef90_A0A6N8H399	1122.0	0	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0056169_35	411471.SUBVAR_07010	1009.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0056169_35	TnsB_0_V-K	44.8	0.0000000000014	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0056169_35	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0056169_35	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0056169_35	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0056169_35	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056169_40	UniRef90_UPI0019671B18	82.4	2.72e-19	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0056169_40	929506.CbC4_1187	56.6	0.000000000592	N/A	N/A
structural_annotation	UHGV-0056169_40	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0056169_41	K23779	50.3	0.000000000000058	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0056169_41	phrog_3	47.5	0.00000000000075	transcriptional repressor	transcription regulation
UniRef90	UHGV-0056169_41	UniRef90_UPI001D0F3786	221.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0056169_41	411471.SUBVAR_07015	158.0	0	N/A	N/A
Pfam	UHGV-0056169_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0056169_41	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0056169_41	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0056169_42	K12063	260.7	0	traC; conjugal transfer ATP-binding protein TraC	N/A
PHROG	UHGV-0056169_42	phrog_2666	41.7	4.8e-18	terminase large subunit	head and packaging
UniRef90	UHGV-0056169_42	UniRef90_A0A1T4XC30	1065.0	0	Type IV secretory pathway, VirB4 component	N/A
eggNOG-mapper	UHGV-0056169_42	411471.SUBVAR_07094	817.0	0	N/A	N/A
Pfam	UHGV-0056169_42	PF19044	N/A	N/A	TraG P-loop domain	P-loop_TraG
COG	UHGV-0056169_42	COG3451	N/A	N/A	Type IV secretory pathway, VirB4 component	N/A
PHROG	UHGV-0056169_43	phrog_3777	76.2	2.6e-22	N/A	unknown function
UniRef90	UHGV-0056169_43	UniRef90_A0A6N8H5G8	134.0	6.54e-38	N/A	N/A
eggNOG-mapper	UHGV-0056169_43	428125.CLOLEP_00776	115.0	3.38e-31	N/A	N/A
Pfam	UHGV-0056169_43	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0056169_43	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0056169_43	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056169_44	UniRef90_UPI00189DC869	127.0	3.94e-35	N/A	N/A
eggNOG-mapper	UHGV-0056169_44	1121422.AUMW01000014_gene1408	122.0	7.4e-34	N/A	N/A
Pfam	UHGV-0056169_44	PF19552	N/A	N/A	N/A	DUF6075
structural_annotation	UHGV-0056169_44	PF19552	N/A	N/A	N/A	N/A
KOfam	UHGV-0056169_45	K19304	134.2	1.4e-39	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0056169_45	phrog_6700	102.5	9.6e-31	endolysin	lysis
UniRef90	UHGV-0056169_45	UniRef90_A0A1Q6KSF8	900.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0056169_45	411471.SUBVAR_07088	428.0	0	Peptidase, M23	N/A
Pfam	UHGV-0056169_45	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0056169_45	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
UniRef90	UHGV-0056169_46	UniRef90_UPI001D0E6BEB	88.6	3e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0056169_46	411483.FAEPRAA2165_03278	61.6	0.00000000000642	Helix-turn-helix domain	N/A
COG	UHGV-0056169_46	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
KOfam	UHGV-0056169_49	K01990	205.7	0	ABC-2.A; ABC-2 type transport system ATP-binding protein	N/A
PHROG	UHGV-0056169_49	phrog_293	162.7	0	ABC transporter	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0056169_49	UniRef90_K1V842	400.0	0	ABC-type multidrug transport system, ATPase component (Fragment)	N/A
eggNOG-mapper	UHGV-0056169_49	1304880.JAGB01000002_gene1943	247.0	0	Abc transporter	N/A
Pfam	UHGV-0056169_49	PF00005	N/A	N/A	ABC transporter	ABC_tran
COG	UHGV-0056169_49	COG1131	N/A	N/A	ABC-type multidrug transport system, ATPase component	N/A
structural_annotation	UHGV-0056169_49	PF00005,MF_01005,TIGR03740,COG1131	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056169_52	UniRef90_A0A1M5WVE7	78.2	0.000000000000245	ABC-2 family transporter protein	N/A
eggNOG-mapper	UHGV-0056169_52	1235792.C808_01421	101.0	1.83e-22	N/A	N/A
structural_annotation	UHGV-0056169_52	PF12730,TIGR03518,COG4200	N/A	N/A	N/A	N/A
KOfam	UHGV-0056169_54	K22300	70.4	4e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0056169_54	phrog_8	63.0	7.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0056169_54	UniRef90_K1UAG6	231.0	0	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-0056169_54	1378168.N510_01810	65.1	0.00000000000348	Transcriptional	N/A
Pfam	UHGV-0056169_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0056169_54	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A