UHGV-0057007 (vOTU-082895)

Viral Genome: UHGV-0057007

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0057007
vOTU ID	vOTU-082895
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_57392
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.42 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9715
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.3
Jumbo phage	No

Genome content
Genome length (bp)	32,473
GC content	57.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	92%
Average CDS length (bps)	541.09
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0057007_3	phrog_3584	207.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0057007_3	UniRef90_UPI001C02C5E0	160.0	2.24208e-44	N/A	N/A
eggNOG-mapper	UHGV-0057007_3	718252.FP2_16510	148.0	2.81e-40	N/A	N/A
structural_annotation	UHGV-0057007_3	PF01446	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0057007_8	693746.OBV_18010	79.0	2.31e-16	N/A	N/A
structural_annotation	UHGV-0057007_8	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_10	phrog_338	60.3	4.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0057007_10	UniRef90_UPI0015F33F36	176.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0057007_10	748224.HMPREF9436_01465	177.0	0	N/A	N/A
PHROG	UHGV-0057007_11	phrog_1066	57.2	2.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0057007_11	445975.COLSTE_02166	75.5	0.00000000000000158	N/A	N/A
AcrCatalog	UHGV-0057007_11	cluster_154855	71.6	1.9e-18	NA	N/A
PHROG	UHGV-0057007_12	phrog_9	139.1	3.59994e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0057007_12	UniRef90_UPI001D0087E2	459.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0057007_12	1410630.JNKP01000001_gene1822	627.0	0	phage terminase, large subunit	N/A
COG	UHGV-0057007_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0057007_12	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_13	phrog_104	213.1	0	portal protein	head and packaging
UniRef90	UHGV-0057007_13	UniRef90_A0A3E2U200	737.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0057007_13	748224.HMPREF9436_01468	753.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0057007_13	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0057007_13	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_14	phrog_193	123.6	1.8e-36	head maturation protease	head and packaging
UniRef90	UHGV-0057007_14	UniRef90_A0A6N8H118	534.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0057007_14	748224.HMPREF9436_01469	390.0	0	N/A	N/A
COG	UHGV-0057007_14	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0057007_15	phrog_774	45.4	0.00000000000055	N/A	unknown function
eggNOG-mapper	UHGV-0057007_15	1042156.CXIVA_01820	55.8	0.00000000481	N/A	N/A
PHROG	UHGV-0057007_16	phrog_194	80.6	2.6e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0057007_16	UniRef90_D4K444	153.0	5.04467e-44	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0057007_16	748224.HMPREF9436_03336	157.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0057007_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0057007_16	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_17	phrog_10	137.3	1.50001e-40	major head protein	head and packaging
UniRef90	UHGV-0057007_17	UniRef90_A0A1Y4TJU9	512.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0057007_17	748224.HMPREF9436_00690	449.0	0	Phage capsid family	N/A
Pfam	UHGV-0057007_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0057007_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0057007_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0057007_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_19	phrog_137	54.3	0.0000000000000016	head-tail adaptor Ad1	connector
UniRef90	UHGV-0057007_19	UniRef90_E2ZGA8	160.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0057007_19	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_20	phrog_501	65.6	8.2e-19	head closure Hc1	connector
eggNOG-mapper	UHGV-0057007_20	748224.HMPREF9436_00693	165.0	0	N/A	N/A
structural_annotation	UHGV-0057007_20	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_21	phrog_387	64.2	1.9e-18	neck protein	connector
UniRef90	UHGV-0057007_21	UniRef90_Q7Y4I0	62.4	0.000000000051	Gp44	N/A
eggNOG-mapper	UHGV-0057007_21	936375.HMPREF1152_0683	71.6	0.0000000000000019	N/A	N/A
PHROG	UHGV-0057007_22	phrog_123	56.0	8e-16	tail terminator	connector
UniRef90	UHGV-0057007_22	UniRef90_F3MWA9	112.0	6.04e-30	N/A	N/A
eggNOG-mapper	UHGV-0057007_22	875454.BAEW01000017_gene1591	110.0	5.66e-30	N/A	N/A
structural_annotation	UHGV-0057007_22	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_23	phrog_117	173.3	0	major tail protein	tail
UniRef90	UHGV-0057007_23	UniRef90_A0A356C4M0	218.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0057007_23	873448.STRPO_0291	209.0	0	N/A	N/A
structural_annotation	UHGV-0057007_23	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_24	phrog_1526	55.8	9.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0057007_24	875454.BAEW01000017_gene1589	53.9	0.0000000229	N/A	N/A
PHROG	UHGV-0057007_25	phrog_1633	120.9	6.7e-36	N/A	unknown function
UniRef90	UHGV-0057007_25	UniRef90_UPI0015CCAF51	108.0	4.37e-28	N/A	N/A
eggNOG-mapper	UHGV-0057007_25	873448.STRPO_0293	104.0	3.13e-27	N/A	N/A
Pfam	UHGV-0057007_25	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0057007_25	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_26	phrog_6900	237.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0057007_26	UniRef90_A0A1C6EH41	300.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0057007_26	936375.HMPREF1152_0688	295.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0057007_26	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0057007_26	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_27	phrog_1194	42.4	0.0000000000095	N/A	unknown function
eggNOG-mapper	UHGV-0057007_27	411471.SUBVAR_06933	101.0	6.23e-26	N/A	N/A
structural_annotation	UHGV-0057007_27	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_28	phrog_18190	83.3	1.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0057007_28	411471.SUBVAR_06932	313.0	0	N/A	N/A
structural_annotation	UHGV-0057007_28	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_29	phrog_18444	82.9	2.2e-24	N/A	unknown function
UniRef90	UHGV-0057007_29	UniRef90_UPI00156E9A45	57.8	0.00000000102	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0057007_29	1294142.CINTURNW_1707	62.0	0.00000000000362	N/A	N/A
structural_annotation	UHGV-0057007_31	PF12245	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0057007_32	428125.CLOLEP_01433	53.1	0.0000000731	N/A	N/A
PHROG	UHGV-0057007_33	phrog_13589	182.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0057007_33	428125.CLOLEP_01434	232.0	0	N/A	N/A
PHROG	UHGV-0057007_35	phrog_19111	47.5	3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0057007_35	756499.Desde_3162	109.0	3.55e-24	nuclear chromosome segregation	N/A
COG	UHGV-0057007_35	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0057007_36	phrog_24267	60.1	5.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0057007_36	508419.F8J176_9CAUD	114.0	3.19e-25	peptidoglycan catabolic process	N/A
Pfam	UHGV-0057007_36	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0057007_36	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
KOfam	UHGV-0057007_37	K07273	182.2	0	acm; lysozyme	N/A
PHROG	UHGV-0057007_37	phrog_291	159.4	0	endolysin	lysis
UniRef90	UHGV-0057007_37	UniRef90_A0A367G061	524.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0057007_37	411471.SUBVAR_06927	318.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0057007_37	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0057007_37	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0057007_37	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0057007_37	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_38	phrog_4105	103.0	1.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0057007_38	657322.FPR_27220	152.0	0	N/A	N/A
PHROG	UHGV-0057007_39	phrog_1129	64.1	1.7e-18	holin	lysis
UniRef90	UHGV-0057007_39	UniRef90_A0A367FT42	167.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0057007_39	693746.OBV_13280	111.0	7.17e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0057007_39	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0057007_39	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0057007_40	K02342	198.4	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0057007_40	phrog_192	157.9	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0057007_40	UniRef90_A0A6N2Y828	158.0	8.59e-40	DNA polymerase III PolC-type	N/A
eggNOG-mapper	UHGV-0057007_40	518637.EUBIFOR_01140	153.0	1.01e-38	EXOIII	N/A
PADLOC	UHGV-0057007_40	cd06127	129.4	3.5e-38	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0057007_40	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0057007_40	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0057007_40	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-0057007_41	K01356	164.6	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0057007_41	phrog_4	128.4	6.9e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0057007_41	UniRef90_A0A6N8H052	254.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0057007_41	718252.FP2_25580	246.0	0	N/A	N/A
Pfam	UHGV-0057007_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0057007_41	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-0057007_41	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-0057007_41	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0057007_41	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0057007_42	UniRef90_A0A6N8H2D7	87.4	2.43e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0057007_42	1121423.JONT01000002_gene2373	51.2	0.000000195	N/A	N/A
structural_annotation	UHGV-0057007_42	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0057007_43	phrog_4583	41.4	0.000000000021	transcriptional repressor	transcription regulation
UniRef90	UHGV-0057007_43	UniRef90_UPI000A0213FB	81.3	1e-18	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0057007_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0057007_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0057007_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0057007_55	K01885	47.0	0.00000000000033	EARS, gltX; glutamyl-tRNA synthetase [EC:6.1.1.17]	N/A
UniRef90	UHGV-0057007_55	UniRef90_A0A7X7N318	76.6	4.29e-16	Glutamate--tRNA ligase	N/A
eggNOG-mapper	UHGV-0057007_55	742722.HMPREF9463_01550	172.0	0	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	N/A
Pfam	UHGV-0057007_55	PF19269	N/A	N/A	Anticodon binding domain	Anticodon_2
COG	UHGV-0057007_55	COG0008	N/A	N/A	Glutamyl- or glutaminyl-tRNA synthetase	N/A