UHGV-0059221 (vOTU-088780)

Viral Genome: UHGV-0059221

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0059221
vOTU ID	vOTU-088780
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_73897
Associated BioSample	SAMEA2338749
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.29 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.87
Jumbo phage	No

Genome content
Genome length (bp)	39,773
GC content	38.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	88%
Average CDS length (bps)	561.77
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0059221_1	585501.HMPREF6123_0821	54.3	0.000000123	N/A	N/A
PHROG	UHGV-0059221_2	phrog_18725	52.7	0.0000000000000081	N/A	unknown function
eggNOG-mapper	UHGV-0059221_2	585501.HMPREF6123_0822	111.0	8.95e-30	N/A	N/A
PHROG	UHGV-0059221_3	phrog_13879	304.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0059221_3	742740.HMPREF9474_03516	502.0	0	N/A	N/A
structural_annotation	UHGV-0059221_3	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_4	phrog_1194	76.9	2.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0059221_4	742740.HMPREF9474_03515	142.0	4.09039e-42	N/A	N/A
structural_annotation	UHGV-0059221_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_5	phrog_167	366.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0059221_5	UniRef90_A0A415D594	1311.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0059221_5	397290.C810_01419	347.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-0059221_5	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0059221_5	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0059221_8	phrog_158	51.4	0.000000000000022	major tail protein	tail
UniRef90	UHGV-0059221_8	UniRef90_UPI00156EB292	173.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0059221_8	1232453.BAIF02000058_gene1634	107.0	4.1e-28	N/A	N/A
structural_annotation	UHGV-0059221_8	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059221_9	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_10	phrog_5	41.1	0.00000000004	tail completion or Neck1 protein	connector
UniRef90	UHGV-0059221_10	UniRef90_UPI001BBD4500	209.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0059221_10	397290.C810_01411	99.4	5.98e-24	N/A	N/A
AcrCatalog	UHGV-0059221_10	cluster_24841	69.3	6.81e-17	NA	N/A
structural_annotation	UHGV-0059221_10	PF17395,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059221_11	1232453.BAIF02000058_gene1630	128.0	2.2e-36	N/A	N/A
structural_annotation	UHGV-0059221_11	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059221_12	397290.C810_01402	88.2	3.29e-21	N/A	N/A
Pfam	UHGV-0059221_12	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-0059221_14	phrog_422	206.4	0	major head protein	head and packaging
UniRef90	UHGV-0059221_14	UniRef90_A0A396PR42	479.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0059221_14	764291.STRUR_2102	292.0	0	N/A	N/A
Pfam	UHGV-0059221_14	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-0059221_14	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059221_15	PF14265,NF038403	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_16	phrog_2468	66.9	3.7e-19	head morphogenesis	head and packaging
UniRef90	UHGV-0059221_16	UniRef90_A0A173S8N9	424.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0059221_16	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0059221_16	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059221_16	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_17	phrog_64	155.2	0	portal protein	head and packaging
UniRef90	UHGV-0059221_17	UniRef90_A0A173S8B9	1046.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0059221_17	476272.RUMHYD_01943	325.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0059221_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0059221_17	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059221_18	UniRef90_A0A173S6N5	278.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0059221_18	1232453.BAIF02000058_gene1624	128.0	4.07e-36	N/A	N/A
Pfam	UHGV-0059221_18	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0059221_18	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_19	phrog_38	153.3	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0059221_19	UniRef90_A0A8D9PG33	494.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0059221_19	1232453.BAIF02000058_gene1623	511.0	0	TIGRFAM Phage	N/A
COG	UHGV-0059221_19	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059221_19	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059221_22	UniRef90_A0A3E3JYB1	95.5	9.83e-25	Conjugal transfer protein	N/A
Pfam	UHGV-0059221_22	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0059221_22	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_23	phrog_2428	95.5	4.1e-28	N/A	unknown function
UniRef90	UHGV-0059221_23	UniRef90_A0A396QA65	247.0	0	ABC transporter ATPase	N/A
eggNOG-mapper	UHGV-0059221_23	632245.CLP_1645	191.0	0	N/A	N/A
dbAPIS	UHGV-0059221_23	APIS024	N/A	N/A	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	N/A
PHROG	UHGV-0059221_24	phrog_355	53.4	0.0000000000000045	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059221_24	UniRef90_UPI000CFA6BAA	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059221_24	97138.C820_00250	125.0	2.09e-36	N/A	N/A
Pfam	UHGV-0059221_24	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0059221_24	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_26	phrog_1048	154.3	0	N/A	unknown function
UniRef90	UHGV-0059221_26	UniRef90_UPI001C01A84D	325.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059221_26	457412.RSAG_01107	247.0	0	N/A	N/A
Pfam	UHGV-0059221_26	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0059221_26	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0059221_26	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-0059221_27	K04087	77.4	1.4e-22	hflC; modulator of FtsH protease HflC	N/A
PHROG	UHGV-0059221_27	phrog_200	154.2	1.4013e-45	lipoprotein	other
UniRef90	UHGV-0059221_27	UniRef90_C0BA46	383.0	0	SPFH/Band 7/PHB domain protein	N/A
eggNOG-mapper	UHGV-0059221_27	537007.BLAHAN_05484	284.0	0	prohibitin homologues	N/A
Pfam	UHGV-0059221_27	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0059221_27	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0059221_27	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059221_31	PF06004,NF033216,COG4568	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059221_32	658655.HMPREF0988_00895	92.8	3.02e-21	N/A	N/A
structural_annotation	UHGV-0059221_32	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059221_33	UniRef90_UPI001C0EB1E3	101.0	8.13e-26	C2H2-type zinc finger protein	N/A
eggNOG-mapper	UHGV-0059221_33	1123288.SOV_6c01490	52.8	0.00000107	endonuclease activity	N/A
Pfam	UHGV-0059221_33	PF09889	N/A	N/A	N/A	DUF2116
COG	UHGV-0059221_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0059221_33	PF10013,PF09889,MF_00649,NF001638,COG4338	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059221_38	UniRef90_A0A396PTM6	129.0	5.11e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0059221_38	411490.ANACAC_00697	95.5	1.67e-24	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0059221_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0059221_38	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059221_43	397290.C810_01347	47.4	0.00000226	N/A	N/A
structural_annotation	UHGV-0059221_43	PF18267	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059221_45	UniRef90_A0A843H561	84.3	4.45e-18	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0059221_45	592031.GCWU000322_00057	74.7	0.0000000000000963	N/A	N/A
structural_annotation	UHGV-0059221_45	PF13058,MF_00745	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_46	phrog_229	118.5	2.5e-35	MazG-like pyrophosphatase	other
UniRef90	UHGV-0059221_46	UniRef90_A0A173S9L2	285.0	0	MazG nucleotide pyrophosphohydrolase domain	N/A
eggNOG-mapper	UHGV-0059221_46	428125.CLOLEP_01391	103.0	7.27e-27	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0059221_46	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0059221_46	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0059221_46	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059221_48	UniRef90_UPI000CF8F0F1	293.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059221_48	97139.C824_02654	89.0	2.7e-21	N/A	N/A
Pfam	UHGV-0059221_48	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0059221_48	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059221_48	PF07866,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_49	phrog_8684	88.5	7.6e-27	N/A	unknown function
UniRef90	UHGV-0059221_49	UniRef90_UPI000CF845A0	296.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0059221_49	1235800.C819_02639	107.0	8.04e-28	YopX protein	N/A
Pfam	UHGV-0059221_49	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0059221_49	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0059221_49	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059221_51	397290.C810_01505	75.5	2.32e-17	N/A	N/A
PHROG	UHGV-0059221_53	phrog_17690	85.3	3.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0059221_53	1235798.C817_03495	66.2	0.00000000000792	N/A	N/A
structural_annotation	UHGV-0059221_54	PF17400	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_55	phrog_5051	129.7	1.9e-38	N/A	unknown function
PHROG	UHGV-0059221_56	phrog_954	223.4	0	DNA methyltransferase	other
UniRef90	UHGV-0059221_56	UniRef90_UPI001898E47B	285.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0059221_56	796940.HMPREF9628_00165	216.0	0	methyltransferase	N/A
PADLOC	UHGV-0059221_56	MTase_II_00074	218.8	0	Type II methyltransferase	RM
Pfam	UHGV-0059221_56	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0059221_56	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0059221_56	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
KOfam	UHGV-0059221_57	K00558	181.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0059221_57	phrog_116	217.9	0	DNA methyltransferase	other
UniRef90	UHGV-0059221_57	UniRef90_A0A373MWF0	825.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0059221_57	742740.HMPREF9474_04317	694.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0059221_57	MTase_II_00020	90.5	5.9e-30	Type II methyltransferase	RM
Pfam	UHGV-0059221_57	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0059221_57	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0059221_57	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059221_58	PF17354	N/A	N/A	N/A	N/A
KOfam	UHGV-0059221_61	K00986	138.8	5.60001e-41	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0059221_61	phrog_1423	254.1	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059221_61	UniRef90_UPI000CF9EB10	686.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0059221_61	658655.HMPREF0988_00871	465.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0059221_61	icity0040	95.3	9.9e-28	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0059221_61	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0059221_61	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0059221_61	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0059221_62	phrog_3206	80.9	1.3e-23	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059221_62	UniRef90_UPI000CFA117C	239.0	0	four helix bundle protein	N/A
eggNOG-mapper	UHGV-0059221_62	658655.HMPREF0988_00872	174.0	0	N/A	N/A
Pfam	UHGV-0059221_62	PF05635	N/A	N/A	23S rRNA-intervening sequence protein	23S_rRNA_IVP
structural_annotation	UHGV-0059221_62	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A