UHGV-0059408 (vOTU-036589)

Viral Genome: UHGV-0059408

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0059408
vOTU ID	vOTU-036589
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_75803
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.9 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.56
Jumbo phage	No

Genome content
Genome length (bp)	26,507
GC content	42.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	93%
Average CDS length (bps)	685.67
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0059408_1	K00986	106.0	4.3e-31	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0059408_1	phrog_1423	160.0	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059408_1	UniRef90_A0A417A9G0	387.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0059408_1	33035.JPJF01000043_gene1000	241.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0059408_1	icity0040	77.9	1e-22	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0059408_1	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0059408_1	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0059408_1	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059408_3	1235797.C816_04174	80.9	1.6e-17	N/A	N/A
structural_annotation	UHGV-0059408_3	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_4	phrog_443	57.5	4.1e-16	holin	lysis
UniRef90	UHGV-0059408_4	UniRef90_UPI0008F89B51	92.4	4.21e-23	holin	N/A
eggNOG-mapper	UHGV-0059408_4	476272.RUMHYD_01759	132.0	7.21e-40	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0059408_4	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0059408_4	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059408_5	PF08207	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_6	phrog_581	285.6	0	minor head protein	head and packaging
UniRef90	UHGV-0059408_6	UniRef90_A0A373MXM0	465.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0059408_6	476272.RUMHYD_01761	480.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0059408_6	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0059408_6	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059408_6	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_7	phrog_3754	111.4	6.8e-33	N/A	unknown function
eggNOG-mapper	UHGV-0059408_7	476272.RUMHYD_01764	258.0	0	N/A	N/A
UniRef90	UHGV-0059408_8	UniRef90_A0A395X7A4	125.0	1.34e-35	CTP synthase	N/A
eggNOG-mapper	UHGV-0059408_8	476272.RUMHYD_01766	181.0	0	N/A	N/A
UniRef90	UHGV-0059408_9	UniRef90_A0A843HPX3	59.7	0.000000000271	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0059408_9	1235790.C805_00057	59.7	0.0000000000466	N/A	N/A
PHROG	UHGV-0059408_10	phrog_21718	193.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0059408_10	476272.RUMHYD_01768	258.0	0	N/A	N/A
PHROG	UHGV-0059408_11	phrog_22984	90.7	1.1e-26	N/A	unknown function
PHROG	UHGV-0059408_12	phrog_16490	199.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0059408_12	476272.RUMHYD_01770	261.0	0	N/A	N/A
PHROG	UHGV-0059408_13	phrog_20016	177.3	0	N/A	unknown function
UniRef90	UHGV-0059408_13	UniRef90_A0A345BPX4	112.0	3.61e-29	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0059408_13	397290.C810_05214	114.0	1.03e-30	N/A	N/A
structural_annotation	UHGV-0059408_13	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_14	phrog_28802	242.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0059408_14	476272.RUMHYD_01772	301.0	0	N/A	N/A
UniRef90	UHGV-0059408_15	UniRef90_UPI001D15D4B7	68.6	0.0000000000000287	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0059408_15	272563.CD630_05081	65.9	0.0000000000000683	Cysteine-rich KTR	N/A
Pfam	UHGV-0059408_15	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0059408_15	PF14205,NF041070	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_16	phrog_194	79.4	5.8e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0059408_16	UniRef90_UPI001D14C9C8	188.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0059408_16	476272.RUMHYD_01775	280.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0059408_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0059408_17	phrog_544	144.9	5.80138e-43	major head protein	head and packaging
UniRef90	UHGV-0059408_17	UniRef90_A0A395X7A1	358.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0059408_17	476272.RUMHYD_01776	523.0	0	N/A	N/A
structural_annotation	UHGV-0059408_17	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059408_18	476272.RUMHYD_01777	202.0	0	N/A	N/A
PHROG	UHGV-0059408_19	phrog_541	107.6	7e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-0059408_19	476272.RUMHYD_01778	223.0	0	N/A	N/A
PHROG	UHGV-0059408_20	phrog_918	121.4	2.7e-36	N/A	unknown function
UniRef90	UHGV-0059408_20	UniRef90_UPI000494EEFE	143.0	6.97847e-43	N/A	N/A
eggNOG-mapper	UHGV-0059408_20	357809.Cphy_2966	140.0	9.64093e-43	N/A	N/A
Pfam	UHGV-0059408_20	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0059408_20	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_21	phrog_3366	114.2	8.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-0059408_21	476272.RUMHYD_01779	255.0	0	N/A	N/A
structural_annotation	UHGV-0059408_21	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_22	phrog_556	60.0	3.1e-17	minor head protein	head and packaging
UniRef90	UHGV-0059408_22	UniRef90_UPI000E4989EB	201.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0059408_22	476272.RUMHYD_01780	195.0	0	N/A	N/A
structural_annotation	UHGV-0059408_22	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_23	phrog_3266	98.2	6.4e-29	tail completion	connector
eggNOG-mapper	UHGV-0059408_23	476272.RUMHYD_01781	144.0	1.71995e-41	N/A	N/A
structural_annotation	UHGV-0059408_23	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_24	phrog_3099	119.0	3.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0059408_24	33035.JPJF01000106_gene3126	210.0	0	N/A	N/A
structural_annotation	UHGV-0059408_24	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_25	phrog_11299	102.6	3.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0059408_25	33035.JPJF01000106_gene3125	70.5	0.000000000000244	N/A	N/A
structural_annotation	UHGV-0059408_25	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_26	phrog_706	110.0	1.7e-32	N/A	unknown function
UniRef90	UHGV-0059408_26	UniRef90_UPI001C0F2CC6	286.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0059408_26	411459.RUMOBE_01383	204.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0059408_26	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0059408_26	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_27	phrog_1535	453.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0059408_27	UniRef90_A0A1C5N853	208.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0059408_27	411459.RUMOBE_01384	302.0	0	phage tail tape measure protein	N/A
COG	UHGV-0059408_27	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0059408_27	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059408_28	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_29	phrog_6616	542.5	0	tail protein	tail
UniRef90	UHGV-0059408_29	UniRef90_A0A173TV73	1139.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0059408_29	33035.JPJF01000043_gene1002	309.0	0	N/A	N/A
structural_annotation	UHGV-0059408_29	PF05113,PF03921,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_31	phrog_4105	71.6	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0059408_31	397288.C806_00056	152.0	0	N/A	N/A
PHROG	UHGV-0059408_32	phrog_18218	140.7	3.89981e-42	N/A	unknown function
UniRef90	UHGV-0059408_32	UniRef90_UPI001C0EBFB3	171.0	0	ribonuclease	N/A
eggNOG-mapper	UHGV-0059408_32	411459.RUMOBE_00910	176.0	0	N/A	N/A
structural_annotation	UHGV-0059408_32	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0059408_33	phrog_9589	58.6	1.6e-18	endolysin	lysis
UniRef90	UHGV-0059408_33	UniRef90_A0A6N9LGV5	416.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0059408_33	1123075.AUDP01000020_gene1533	432.0	0	pathogenesis	N/A
Pfam	UHGV-0059408_33	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0059408_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0059408_33	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0059408_33	PF01471,PF01374,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0059408_34	K07741	49.3	0.00000000000016	antB; anti-repressor protein	N/A
PHROG	UHGV-0059408_34	phrog_130	207.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0059408_34	UniRef90_A0A2Z4UD85	368.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0059408_34	658655.HMPREF0988_00912	315.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0059408_34	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0059408_34	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0059408_34	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0059408_34	PF03374,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0059408_35	K14059	168.1	0	int; integrase	N/A
PHROG	UHGV-0059408_35	phrog_1	157.7	0	integrase	integration and excision
UniRef90	UHGV-0059408_35	UniRef90_UPI00156E983E	514.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0059408_35	1304866.K413DRAFT_1180	387.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0059408_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0059408_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0059408_35	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A