UHGV-0059600 (vOTU-124064)

Viral Genome: UHGV-0059600

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0059600
vOTU ID	vOTU-124064
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_87869
Associated BioSample	SAMEA2338809
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.3
Jumbo phage	No

Genome content
Genome length (bp)	29,304
GC content	44.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	95%
Average CDS length (bps)	644.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0059600_1	K07273	195.8	0	acm; lysozyme	N/A
PHROG	UHGV-0059600_1	phrog_291	156.2	0	endolysin	lysis
UniRef90	UHGV-0059600_1	UniRef90_A0A173YXL7	608.0	0	N-acetylmuramoyl-L-alanine amidase sle1	N/A
eggNOG-mapper	UHGV-0059600_1	33035.JPJF01000043_gene994	268.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0059600_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0059600_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0059600_1	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0059600_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0059600_1	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_2	phrog_443	55.6	0.0000000000000016	holin	lysis
UniRef90	UHGV-0059600_2	UniRef90_UPI001C3AE2A9	115.0	4.66e-32	Holin	N/A
eggNOG-mapper	UHGV-0059600_2	476272.RUMHYD_01759	81.6	1.55e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0059600_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0059600_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_3	phrog_1863	82.5	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0059600_3	1232453.BAIF02000059_gene1610	107.0	8.28e-30	N/A	N/A
PHROG	UHGV-0059600_4	phrog_5056	78.8	3.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0059600_4	665950.HMPREF1025_02516	94.0	2.65e-25	N/A	N/A
structural_annotation	UHGV-0059600_4	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_5	phrog_5056	67.6	1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0059600_5	1033738.CAEP01000136_gene2875	58.9	0.0000000000199	N/A	N/A
structural_annotation	UHGV-0059600_5	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_6	phrog_12931	160.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0059600_6	665950.HMPREF1025_02518	243.0	0	N/A	N/A
PHROG	UHGV-0059600_7	phrog_2712	43.9	0.0000000000032	tail fiber protein	tail
eggNOG-mapper	UHGV-0059600_7	553973.CLOHYLEM_05669	59.3	0.0000000132	to Mitochondrial intermediate peptidase K01410	N/A
COG	UHGV-0059600_7	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0059600_8	phrog_13141	382.3	0	N/A	unknown function
UniRef90	UHGV-0059600_8	UniRef90_A0A6L8RVX5	233.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0059600_8	411460.RUMTOR_02097	449.0	0	N/A	N/A
structural_annotation	UHGV-0059600_8	PF20747,PF17900	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_9	phrog_538	198.8	0	minor tail protein	tail
UniRef90	UHGV-0059600_9	UniRef90_UPI001F3E20C1	293.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0059600_9	411460.RUMTOR_02096	483.0	0	N/A	N/A
Pfam	UHGV-0059600_9	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0059600_9	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_10	phrog_33	50.8	0.000000000000036	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0059600_10	411461.DORFOR_00734	306.0	0	N/A	N/A
structural_annotation	UHGV-0059600_10	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_11	phrog_5218	501.2	0	N/A	unknown function
UniRef90	UHGV-0059600_11	UniRef90_A5KPB0	1739.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0059600_11	411460.RUMTOR_02094	1739.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0059600_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0059600_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0059600_11	COG4487	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059600_11	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_12	phrog_706	166.0	0	N/A	unknown function
UniRef90	UHGV-0059600_12	UniRef90_A0A174B750	387.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0059600_12	411460.RUMTOR_02091	334.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0059600_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0059600_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_13	phrog_4450	60.9	2.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0059600_13	1280692.AUJL01000004_gene838	53.9	0.000000106	N/A	N/A
Pfam	UHGV-0059600_13	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0059600_13	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_14	phrog_3099	199.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0059600_14	742723.HMPREF9477_00900	270.0	0	N/A	N/A
structural_annotation	UHGV-0059600_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_15	phrog_3266	144.3	3.9937e-43	tail completion	connector
UniRef90	UHGV-0059600_15	UniRef90_UPI0011DD0321	132.0	8.2e-37	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0059600_15	742723.HMPREF9477_00901	240.0	0	N/A	N/A
structural_annotation	UHGV-0059600_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_16	phrog_556	92.5	3.6e-27	minor head protein	head and packaging
UniRef90	UHGV-0059600_16	UniRef90_A0A174B7G8	209.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0059600_16	742723.HMPREF9477_00902	155.0	0	Minor capsid protein	N/A
Pfam	UHGV-0059600_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0059600_16	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_17	phrog_3366	114.5	7.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0059600_17	742723.HMPREF9477_00903	186.0	0	N/A	N/A
Pfam	UHGV-0059600_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0059600_17	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_18	phrog_541	64.8	1.4e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0059600_18	411462.DORLON_00785	77.0	2.23e-16	N/A	N/A
PHROG	UHGV-0059600_19	phrog_422	213.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0059600_19	411470.RUMGNA_02219	535.0	0	N/A	N/A
structural_annotation	UHGV-0059600_19	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_20	phrog_194	109.1	4.9e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-0059600_20	UniRef90_A5KPA4	306.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0059600_20	658655.HMPREF0988_02561	313.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0059600_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0059600_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_21	phrog_355	66.4	3.8e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059600_21	UniRef90_UPI000CFA6BAA	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059600_21	97138.C820_00250	130.0	3.38e-38	N/A	N/A
Pfam	UHGV-0059600_21	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0059600_21	PF14359,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059600_22	658655.HMPREF0988_02562	140.0	2.14959e-42	N/A	N/A
PHROG	UHGV-0059600_23	phrog_581	340.4	0	minor head protein	head and packaging
UniRef90	UHGV-0059600_23	UniRef90_A0A174BAS8	989.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0059600_23	658655.HMPREF0988_02563	934.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0059600_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0059600_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059600_23	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_24	phrog_533	329.5	0	portal protein	head and packaging
UniRef90	UHGV-0059600_24	UniRef90_A0A174B716	811.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0059600_24	658655.HMPREF0988_02564	825.0	0	N/A	N/A
structural_annotation	UHGV-0059600_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0059600_25	K06909	79.5	5.3e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0059600_25	phrog_2	86.9	4e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0059600_25	UniRef90_A5KPA1	853.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0059600_25	411460.RUMTOR_02085	853.0	0	N/A	N/A
Pfam	UHGV-0059600_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0059600_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0059600_25	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_26	phrog_2412	157.4	0	N/A	unknown function
UniRef90	UHGV-0059600_26	UniRef90_UPI001E414EFE	184.0	0	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0059600_26	742723.HMPREF9477_00912	238.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059600_27	411460.RUMTOR_02083	87.8	7.85e-23	N/A	N/A
structural_annotation	UHGV-0059600_28	PF14524,NF041178	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059600_29	1235799.C818_04214	84.0	1.75e-18	N/A	N/A
PHROG	UHGV-0059600_30	phrog_36	63.3	5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0059600_30	UniRef90_UPI001D09763E	224.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0059600_30	33035.JPJF01000107_gene434	162.0	0	Sigma-70, region 4	N/A
Pfam	UHGV-0059600_30	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0059600_30	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_31	phrog_30671	134.2	2.4e-40	N/A	unknown function
UniRef90	UHGV-0059600_31	UniRef90_A0A6I3QIW7	112.0	3.09e-31	DNA-binding response regulator	N/A
PHROG	UHGV-0059600_32	phrog_15077	209.5	0	N/A	unknown function
UniRef90	UHGV-0059600_32	UniRef90_A0A354J797	174.0	0	RNA_pol_A_CTD domain-containing protein	N/A
eggNOG-mapper	UHGV-0059600_32	742765.HMPREF9457_02110	284.0	0	N/A	N/A
structural_annotation	UHGV-0059600_32	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_33	phrog_23374	93.5	1.3e-27	N/A	unknown function
PHROG	UHGV-0059600_34	phrog_8841	633.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059600_34	UniRef90_A0A1C5YVP9	1079.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0059600_34	476272.RUMHYD_01742	843.0	0	N/A	N/A
Pfam	UHGV-0059600_34	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0059600_34	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0059600_34	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059600_34	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0059600_35	K02316	79.8	4.1e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0059600_35	phrog_11992	225.8	0	N/A	unknown function
UniRef90	UHGV-0059600_35	UniRef90_A5KP85	319.0	0	CHC2 zinc finger domain protein	N/A
eggNOG-mapper	UHGV-0059600_35	411460.RUMTOR_02069	319.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0059600_35	drt-UG29	63.7	2.1e-18	DRT	DRT
Pfam	UHGV-0059600_35	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0059600_35	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0059600_35	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_36	phrog_3490	160.8	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059600_36	UniRef90_A5KP84	348.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0059600_36	411460.RUMTOR_02068	348.0	0	N/A	N/A
Pfam	UHGV-0059600_36	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0059600_36	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0059600_37	K03111	126.3	4.1e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0059600_37	phrog_44	133.8	1.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059600_37	UniRef90_A5KP83	296.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0059600_37	411460.RUMTOR_02067	296.0	0	N/A	N/A
Pfam	UHGV-0059600_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0059600_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0059600_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0059600_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0059600_37	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_38	phrog_21649	130.2	1.7e-38	N/A	unknown function
UniRef90	UHGV-0059600_38	UniRef90_UPI001D0DD6FE	240.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0059600_38	411460.RUMTOR_02066	496.0	0	ERF superfamily	N/A
Pfam	UHGV-0059600_38	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0059600_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0059600_38	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_39	phrog_674	235.7	0	N/A	unknown function
UniRef90	UHGV-0059600_39	UniRef90_A0A373SW80	299.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059600_39	411460.RUMTOR_02065	511.0	0	N/A	N/A
Pfam	UHGV-0059600_39	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0059600_39	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_40	phrog_3777	95.6	2.7e-28	N/A	unknown function
UniRef90	UHGV-0059600_40	UniRef90_A0A6L8RVX0	139.0	1.87e-40	N/A	N/A
eggNOG-mapper	UHGV-0059600_40	411460.RUMTOR_02064	238.0	0	N/A	N/A
Pfam	UHGV-0059600_40	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0059600_40	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_41	phrog_34638	140.3	2.79979e-42	N/A	unknown function
structural_annotation	UHGV-0059600_41	COG1965	N/A	N/A	N/A	N/A
PHROG	UHGV-0059600_42	phrog_22934	166.4	0	N/A	unknown function