UHGV-0060785 (vOTU-021827)

Viral Genome: UHGV-0060785

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0060785
vOTU ID	vOTU-021827
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_83609
Associated BioSample	SAMEA2338824
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.68 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9681
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.74
Jumbo phage	No

Genome content
Genome length (bp)	38,854
GC content	48.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	93%
Average CDS length (bps)	725.58
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0060785_1	K14059	84.3	2.2e-24	int; integrase	N/A
PHROG	UHGV-0060785_1	phrog_1	138.0	9.19994e-41	integrase	integration and excision
UniRef90	UHGV-0060785_1	UniRef90_UPI0012BC6D7A	732.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0060785_1	469610.HMPREF0189_01846	309.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0060785_1	PF13356	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_3
Pfam	UHGV-0060785_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0060785_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0060785_1	PF00589,PF13356,PF14659,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_2	phrog_66	40.6	0.000000000062	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-0060785_2	UniRef90_UPI0012BBDD1D	123.0	6.16e-36	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0060785_2	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0060785_2	PF12728,NF033499,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_3	phrog_2245	59.1	8.1e-17	nucleoside triphosphate pyrophosphohydrolase	other
PHROG	UHGV-0060785_5	phrog_954	174.2	0	DNA methyltransferase	other
UniRef90	UHGV-0060785_5	UniRef90_D9Y6J6	318.0	0	Methyltransf_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-0060785_5	469610.HMPREF0189_01151	318.0	0	Methyltransferase domain	N/A
PADLOC	UHGV-0060785_5	MTase_II_00074	152.6	2.8026e-45	Type II methyltransferase	RM
Pfam	UHGV-0060785_5	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0060785_5	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0060785_5	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_6	phrog_27524	55.3	6.2e-16	N/A	unknown function
UniRef90	UHGV-0060785_6	UniRef90_F3QJ89	395.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0060785_6	762966.HMPREF9439_00990	395.0	0	N/A	N/A
PHROG	UHGV-0060785_9	phrog_253	109.6	2.9e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0060785_9	UniRef90_UPI001898EED4	98.2	5.94e-23	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0060785_9	1129146.H2BDF7_9CAUD	90.9	7.09e-21	Siphovirus Gp157	N/A
Pfam	UHGV-0060785_9	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0060785_9	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-0060785_10	K03111	154.6	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0060785_10	phrog_44	131.9	4.6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0060785_10	UniRef90_F3QNN6	150.0	7.14662e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0060785_10	469610.HMPREF0189_01394	150.0	1.26117e-44	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0060785_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0060785_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0060785_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0060785_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0060785_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_11	phrog_2324	111.3	5.8e-33	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0060785_11	UniRef90_A0A6J5P0M3	85.5	1.19e-16	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0060785_11	1207076.ALAT01000105_gene1941	80.1	0.00000000000000102	ERF superfamily	N/A
Pfam	UHGV-0060785_11	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0060785_11	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0060785_15	UniRef90_A0A3D3SJ30	138.0	1.36e-40	Transcriptional regulator	N/A
UniRef90	UHGV-0060785_16	UniRef90_UPI001C3E8E16	288.0	0	restriction endonuclease	N/A
Pfam	UHGV-0060785_16	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0060785_16	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
structural_annotation	UHGV-0060785_16	PF04471,MF_00722,NF002876,COG1787	N/A	N/A	N/A	N/A
KOfam	UHGV-0060785_17	K22300	74.5	1.9e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0060785_17	phrog_4	171.5	0	transcriptional repressor	transcription regulation
UniRef90	UHGV-0060785_17	UniRef90_UPI0006D77E25	147.0	1.51e-40	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0060785_17	1121921.KB898706_gene3022	120.0	5.48e-31	Peptidase S24-like	N/A
Pfam	UHGV-0060785_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0060785_17	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0060785_17	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0060785_17	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_18	phrog_35	54.5	0.0000000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-0060785_18	UniRef90_UPI0012D931AA	61.6	0.0000000000292	Cro/CI family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0060785_18	1038866.KB902768_gene5297	55.8	0.0000000202	Nitrate reductase delta subunit	N/A
Pfam	UHGV-0060785_18	PF15943	N/A	N/A	Bacterial toxin YdaS	YdaS_toxin
COG	UHGV-0060785_18	COG3381	N/A	N/A	Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation	N/A
structural_annotation	UHGV-0060785_18	PF15943,NF041951,COG4197	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_20	phrog_1032	53.9	0.0000000000000027	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0060785_20	UniRef90_UPI0012BB907D	204.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0060785_20	469610.HMPREF0189_01095	141.0	2.85e-37	N/A	N/A
Pfam	UHGV-0060785_20	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0060785_20	PF07106,MF_01177,TIGR01610,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0060785_21	K02315	182.8	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0060785_21	phrog_50	180.3	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0060785_21	UniRef90_D9Y6E1	425.0	0	IstB-like ATP-binding protein	N/A
eggNOG-mapper	UHGV-0060785_21	469610.HMPREF0189_01096	425.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0060785_21	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0060785_21	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0060785_21	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0060785_23	762966.HMPREF9439_01020	162.0	0	N/A	N/A
PHROG	UHGV-0060785_24	phrog_244	74.9	1.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0060785_24	997346.HMPREF9374_1133	50.1	0.00000212	N/A	N/A
structural_annotation	UHGV-0060785_24	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0060785_25	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0060785_26	K07474	112.2	9.3e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0060785_26	phrog_51	108.5	6.6e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0060785_26	UniRef90_UPI0012BCC981	255.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0060785_26	641147.HMPREF9021_01785	94.7	1.92e-22	Terminase small subunit	N/A
Pfam	UHGV-0060785_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0060785_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0060785_26	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0060785_27	K06909	49.3	0.000000000000064	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0060785_27	phrog_5902	249.4	0	N/A	unknown function
UniRef90	UHGV-0060785_27	UniRef90_UPI0012BCF9F6	1031.0	0	terminase	N/A
eggNOG-mapper	UHGV-0060785_27	665942.HMPREF1022_00139	444.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-0060785_27	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0060785_27	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0060785_28	UniRef90_UPI0012BC2332	280.0	0	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0060785_28	1072685.IX83_07115	91.3	2.03e-21	Acetyltransferase (GNAT) family	N/A
Pfam	UHGV-0060785_28	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
COG	UHGV-0060785_28	COG3375	N/A	N/A	Predicted acetyltransferase, GNAT superfamily	N/A
PHROG	UHGV-0060785_30	phrog_332	470.5	0	head-tail adaptor	connector
UniRef90	UHGV-0060785_30	UniRef90_UPI0012BC467D	889.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0060785_30	194699.PORTL_BPBPP	434.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0060785_30	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0060785_30	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_31	phrog_528	49.9	0.000000000000038	N/A	unknown function
PHROG	UHGV-0060785_32	phrog_458	151.2	8.40779e-45	protease	other
UniRef90	UHGV-0060785_32	UniRef90_UPI0013EFD20D	119.0	1.68e-29	protease	N/A
eggNOG-mapper	UHGV-0060785_32	557598.LHK_01541	105.0	2.18e-25	N/A	N/A
PHROG	UHGV-0060785_33	phrog_212	49.2	1.5e-22	major head protein	head and packaging
UniRef90	UHGV-0060785_33	UniRef90_Q775C7	143.0	1.51e-36	Bbp17	N/A
eggNOG-mapper	UHGV-0060785_33	194699.Q775C7_BPBPP	143.0	2.53e-37	viral capsid	N/A
Pfam	UHGV-0060785_33	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0060785_33	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_34	phrog_427	86.8	2.1e-25	N/A	unknown function
UniRef90	UHGV-0060785_34	UniRef90_Q775C8	71.2	0.000000000000339	Bbp16	N/A
eggNOG-mapper	UHGV-0060785_34	194699.Q775C8_BPBPP	71.2	0.0000000000000568	N/A	N/A
Pfam	UHGV-0060785_34	PF21190	N/A	N/A	Bbp16	Bbp16
structural_annotation	UHGV-0060785_34	PF21190,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_35	phrog_394	92.4	4.9e-27	tail protein	tail
eggNOG-mapper	UHGV-0060785_35	557598.LHK_01545	87.8	3.51e-19	N/A	N/A
structural_annotation	UHGV-0060785_35	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_36	phrog_376	440.7	0	tail protein	tail
UniRef90	UHGV-0060785_36	UniRef90_A0A6F8VDG3	605.0	0	N/A	N/A
eggNOG-mapper	UHGV-0060785_36	557598.LHK_01546	706.0	0	N/A	N/A
structural_annotation	UHGV-0060785_36	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_37	phrog_418	44.7	0.000000000002	internal virion protein	head and packaging
UniRef90	UHGV-0060785_37	UniRef90_A0A6F8VD79	84.0	3.3e-16	N/A	N/A
eggNOG-mapper	UHGV-0060785_37	557598.LHK_01551	73.9	0.000000000000356	N/A	N/A
structural_annotation	UHGV-0060785_37	PF07321,COG5034	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_38	phrog_873	92.4	1.6e-27	endolysin	head and packaging
eggNOG-mapper	UHGV-0060785_38	526118.B4YQH3_9CAUD	84.0	0.000000000000223	lytic transglycosylase activity	N/A
structural_annotation	UHGV-0060785_38	MF_04122	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_39	phrog_5143	130.6	6.02558e-44	N/A	unknown function
eggNOG-mapper	UHGV-0060785_39	1415780.JPOG01000001_gene1744	104.0	1.39e-19	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	N/A
Pfam	UHGV-0060785_39	PF18763	N/A	N/A	ddrB-like ParB superfamily domain	ddrB-ParB
COG	UHGV-0060785_39	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
PHROG	UHGV-0060785_40	phrog_684	571.0	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0060785_40	1157708.KB907450_gene5438	367.0	0	N/A	N/A
KOfam	UHGV-0060785_41	K06823	42.6	0.0000000000027	COL18A; collagen type XVIII alpha	N/A
PHROG	UHGV-0060785_41	phrog_1640	42.0	0.000000000014	tail protein	tail
Pfam	UHGV-0060785_41	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0060785_41	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_42	phrog_5073	62.9	2.8e-20	tail fiber protein	tail
eggNOG-mapper	UHGV-0060785_42	563192.HMPREF0179_03429	57.4	0.00000108	domain, Protein	N/A
Pfam	UHGV-0060785_42	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0060785_42	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0060785_43	phrog_4912	115.4	8.99998e-41	tail fiber assembly	tail
UniRef90	UHGV-0060785_43	UniRef90_UPI001F4F2EB0	232.0	0	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0060785_43	469610.HMPREF0189_01210	206.0	0	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0060785_43	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0060785_43	PF16778	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0060785_44	469610.HMPREF0189_02346	64.7	0.00000000000884	N/A	N/A
structural_annotation	UHGV-0060785_44	PF17065,TIGR03511,COG1843	N/A	N/A	N/A	N/A
PHROG	UHGV-0060785_46	phrog_199	68.3	8.7e-20	holin	lysis
UniRef90	UHGV-0060785_46	UniRef90_UPI0012BCAC2D	181.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0060785_46	762966.HMPREF9439_01063	174.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0060785_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0060785_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0060785_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0060785_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0060785_47	K01185	101.7	1.1e-29	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0060785_47	phrog_7	121.2	1.1e-35	endolysin	lysis
UniRef90	UHGV-0060785_47	UniRef90_A0A5B3FP35	298.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0060785_47	469610.HMPREF0189_02350	193.0	0	Phage lysozyme	N/A
Pfam	UHGV-0060785_47	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
COG	UHGV-0060785_47	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
structural_annotation	UHGV-0060785_47	PF00959,MF_04110,COG3772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0060785_49	UniRef90_A0A1N7K090	77.8	9.48e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-0060785_49	469610.HMPREF0189_02290	90.1	1.74e-23	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0060785_49	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0060785_49	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0060785_50	K10009	134.0	1.5e-39	tcyB, yecS; L-cystine transport system permease protein	N/A
PHROG	UHGV-0060785_50	phrog_18202	55.5	9.8e-16	N/A	unknown function
UniRef90	UHGV-0060785_50	UniRef90_R6A3C9	151.0	0	ABC transporter permease protein	N/A
eggNOG-mapper	UHGV-0060785_50	469610.HMPREF0189_01619	151.0	2.8026e-45	Binding-protein-dependent transport system inner membrane component	N/A
Pfam	UHGV-0060785_50	PF00528	N/A	N/A	Binding-protein-dependent transport system inner membrane component	BPD_transp_1
NCBIFam	UHGV-0060785_50	TIGR01726.1	N/A	N/A	ABC transporter permease subunit	N/A
COG	UHGV-0060785_50	COG0765	N/A	N/A	ABC-type amino acid transport system, permease component	N/A