UHGV-0061655 (vOTU-067333)

Viral Genome: UHGV-0061655

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0061655
vOTU ID	vOTU-067333
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_71973
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.6 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.94
Jumbo phage	No

Genome content
Genome length (bp)	42,199
GC content	55.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	92%
Average CDS length (bps)	549.25
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0061655_1	phrog_36	70.3	3.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0061655_1	UniRef90_A0A6N7TNN9	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-0061655_1	748224.HMPREF9436_01463	79.3	8.02e-17	N/A	N/A
Pfam	UHGV-0061655_1	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0061655_1	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
COG	UHGV-0061655_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0061655_3	K01160	59.1	1.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0061655_3	phrog_34	57.2	3.8e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061655_3	UniRef90_A0A6N7TND6	220.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0061655_3	875454.BAEW01000002_gene491	131.0	7.85e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0061655_3	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0061655_3	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0061655_3	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_4	phrog_3136	142.9	9.30462e-43	N/A	unknown function
UniRef90	UHGV-0061655_4	UniRef90_UPI001C02A61B	201.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0061655_4	97139.C824_00742	75.9	0.00000000000000545	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0061655_4	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0061655_4	PF04266,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_6	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0061655_7	K02086	64.2	2.1e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0061655_7	phrog_186	73.8	2.1e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061655_7	UniRef90_A0A844D5V0	225.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0061655_7	748224.HMPREF9436_03357	65.9	0.000000000651	N/A	N/A
Pfam	UHGV-0061655_7	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0061655_7	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0061655_7	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0061655_7	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-0061655_8	UniRef90_UPI001CBB85F6	114.0	8.43e-29	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0061655_8	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_9	phrog_2760	186.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061655_9	UniRef90_A0A3A6EAW6	497.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0061655_9	1235794.C811_01355	157.0	1.44334e-43	RecT family	N/A
Pfam	UHGV-0061655_9	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0061655_9	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0061655_9	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0061655_9	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_10	phrog_674	144.9	5.99756e-43	N/A	unknown function
UniRef90	UHGV-0061655_10	UniRef90_A0A3A6E846	472.0	0	N/A	N/A
eggNOG-mapper	UHGV-0061655_10	556268.OFAG_00840	85.9	1.35e-16	N/A	N/A
Pfam	UHGV-0061655_10	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0061655_10	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_13	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_14	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_16	phrog_4433	154.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0061655_16	33035.JPJF01000122_gene2458	99.8	9.1e-22	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0061655_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0061655_16	PF12120,NF007410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0061655_19	1121865.OMW_01950	73.6	3.24e-16	N/A	N/A
structural_annotation	UHGV-0061655_19	PF17516,NF007197	N/A	N/A	N/A	N/A
KOfam	UHGV-0061655_20	K07741	147.4	2.00386e-43	antB; anti-repressor protein	N/A
PHROG	UHGV-0061655_20	phrog_63	118.5	6.6e-35	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0061655_20	UniRef90_A0A6N7TLD1	289.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0061655_20	1230342.CTM_16892	209.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0061655_20	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0061655_20	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0061655_20	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0061655_20	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_21	phrog_8	43.0	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0061655_21	UniRef90_UPI001C009F10	121.0	7.64e-35	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0061655_21	699218.HMPREF0889_0208	49.7	0.00000109	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0061655_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0061655_21	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0061655_21	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_22	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_24	phrog_888	63.7	2.2e-34	N/A	unknown function
UniRef90	UHGV-0061655_24	UniRef90_A0A6N7TMA2	411.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0061655_24	1415774.U728_165	81.3	0.00000000000000157	Short C-terminal domain	N/A
Pfam	UHGV-0061655_24	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0061655_24	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0061655_24	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-0061655_27	UniRef90_A0A6N7TLT0	303.0	0	Helix-turn-helix domain-containing protein	N/A
KOfam	UHGV-0061655_28	K14059	144.2	1.60028e-42	int; integrase	N/A
PHROG	UHGV-0061655_28	phrog_1	165.5	0	integrase	integration and excision
UniRef90	UHGV-0061655_28	UniRef90_A0A6N7TNQ4	740.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0061655_28	411471.SUBVAR_05137	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0061655_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0061655_28	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0061655_28	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_30	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_31	phrog_20016	199.3	0	N/A	unknown function
UniRef90	UHGV-0061655_31	UniRef90_A0A285PT46	211.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0061655_31	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-0061655_31	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_32	phrog_16490	148.4	3.92364e-44	N/A	unknown function
eggNOG-mapper	UHGV-0061655_32	1408437.JNJN01000043_gene803	143.0	3.03e-39	N/A	N/A
PHROG	UHGV-0061655_33	phrog_22984	75.5	3.8e-22	N/A	unknown function
PHROG	UHGV-0061655_34	phrog_21718	124.5	7e-37	N/A	unknown function
eggNOG-mapper	UHGV-0061655_34	397290.C810_05210	101.0	5.31e-25	N/A	N/A
PHROG	UHGV-0061655_35	phrog_3754	93.7	1.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0061655_35	1235790.C805_00054	109.0	2.61e-29	N/A	N/A
eggNOG-mapper	UHGV-0061655_37	1235798.C817_04600	61.6	0.0000000000704	N/A	N/A
structural_annotation	UHGV-0061655_37	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_38	phrog_99	51.4	0.000000000000018	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061655_38	UniRef90_UPI001C11ECC0	90.5	3.64e-18	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0061655_38	742740.HMPREF9474_00071	90.1	5.15e-19	N/A	N/A
Pfam	UHGV-0061655_38	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0061655_38	PF18337,PF00847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_39	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0061655_42	411483.FAEPRAA2165_00757	174.0	0	N/A	N/A
PHROG	UHGV-0061655_43	phrog_15303	115.2	3.2e-34	N/A	unknown function
Pfam	UHGV-0061655_43	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0061655_45	K07273	166.1	0	acm; lysozyme	N/A
PHROG	UHGV-0061655_45	phrog_291	140.5	1.49995e-41	endolysin	lysis
UniRef90	UHGV-0061655_45	UniRef90_E2ZES5	341.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0061655_45	748224.HMPREF9436_00154	341.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0061655_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0061655_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0061655_45	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_46	phrog_1382	40.7	0.000000000016	N/A	unknown function
PHROG	UHGV-0061655_48	phrog_10993	217.1	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0061655_48	UniRef90_A0A350TI55	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-0061655_48	718252.FP2_16970	235.0	0	N/A	N/A
Pfam	UHGV-0061655_48	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0061655_48	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_50	phrog_3558	208.8	0	tail protein	tail
UniRef90	UHGV-0061655_50	UniRef90_UPI001C01D15B	159.0	2.78e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-0061655_50	1235799.C818_04233	100.0	9.69e-20	Prophage endopeptidase tail	N/A
Pfam	UHGV-0061655_50	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0061655_50	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0061655_50	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0061655_51	1235792.C808_00094	116.0	7.36e-29	phage tail	N/A
COG	UHGV-0061655_51	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0061655_51	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_52	phrog_28775	128.3	1.2e-39	tail length tape measure protein	tail
UniRef90	UHGV-0061655_52	UniRef90_A0A6N7TLD3	1159.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0061655_52	411470.RUMGNA_02228	128.0	1.01e-27	tape measure	N/A
Pfam	UHGV-0061655_52	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0061655_52	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0061655_52	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0061655_52	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_55	phrog_885	66.7	3e-19	major tail protein	tail
eggNOG-mapper	UHGV-0061655_55	1111121.HMPREF1247_0789	150.0	3.22299e-43	N/A	N/A
structural_annotation	UHGV-0061655_55	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_56	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_57	phrog_17977	44.8	0.0000000000019	N/A	unknown function
UniRef90	UHGV-0061655_57	UniRef90_A0A844DHJ8	125.0	1.22e-34	Phage head closure protein	N/A
structural_annotation	UHGV-0061655_57	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_59	phrog_544	155.5	0	major head protein	head and packaging
UniRef90	UHGV-0061655_59	UniRef90_R0BKA1	458.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0061655_59	476272.RUMHYD_01776	339.0	0	N/A	N/A
structural_annotation	UHGV-0061655_59	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_62	phrog_5	48.9	0.00000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-0061655_62	UniRef90_A0A6N7TNP6	298.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0061655_62	1123309.AQYB01000018_gene814	88.2	2.69e-20	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0061655_62	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0061655_62	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_65	phrog_2468	80.3	1.4e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0061655_65	UniRef90_A0A6N7TLR7	627.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0061655_65	1504822.CCNO01000013_gene286	112.0	2.52e-24	cell adhesion	N/A
Pfam	UHGV-0061655_65	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0061655_65	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0061655_65	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_67	phrog_64	125.0	2.8e-37	portal protein	head and packaging
UniRef90	UHGV-0061655_67	UniRef90_A0A6N7TNT3	884.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0061655_67	642492.Clole_2764	85.5	0.00000000000000552	phage portal protein, SPP1	N/A
Pfam	UHGV-0061655_67	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0061655_67	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0061655_68	K06909	144.0	1.3999e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0061655_68	phrog_10250	172.2	0	N/A	unknown function
UniRef90	UHGV-0061655_68	UniRef90_A0A844D8I4	838.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0061655_68	411490.ANACAC_00783	488.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0061655_68	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0061655_68	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0061655_68	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0061655_68	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0061655_68	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_69	phrog_309	102.5	3.6e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0061655_69	UniRef90_UPI000AC737F1	89.7	6.85e-20	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0061655_69	748224.HMPREF9436_03342	166.0	0	transposase activity	N/A
COG	UHGV-0061655_69	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0061655_70	K07319	107.2	2.7e-32	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0061655_70	phrog_498	262.1	0	DNA methyltransferase	other
UniRef90	UHGV-0061655_70	UniRef90_A0A1H0YNW6	338.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0061655_70	742823.HMPREF9465_00225	299.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-0061655_70	MTase_II_00015	258.1	0	Type II methyltransferase	RM
Pfam	UHGV-0061655_70	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0061655_70	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0061655_70	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0061655_71	phrog_498	139.9	2.20004e-41	DNA methyltransferase	other
UniRef90	UHGV-0061655_71	UniRef90_A0A3F3JUE2	237.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0061655_71	748224.HMPREF9436_03344	235.0	0	ParB-like nuclease domain	N/A
PADLOC	UHGV-0061655_71	MTase_II_00015	88.7	1e-25	Type II methyltransferase	RM
Pfam	UHGV-0061655_71	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0061655_71	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0061655_71	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A