UHGV-0062342 (vOTU-074449)

Viral Genome: UHGV-0062342

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0062342
vOTU ID	vOTU-074449
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_104532
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.13 (High-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-6.95
Jumbo phage	No

Genome content
Genome length (bp)	36,230
GC content	57.16%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	87%
Average CDS length (bps)	628.86
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0062342_1	phrog_422	120.7	1.3e-35	major head protein	head and packaging
UniRef90	UHGV-0062342_1	UniRef90_K1S1E0	360.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-0062342_1	693746.OBV_01700	222.0	0	N/A	N/A
Pfam	UHGV-0062342_1	PF13287	N/A	N/A	Fn3 associated	Fn3_assoc
structural_annotation	UHGV-0062342_1	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062342_2	1519439.JPJG01000011_gene57	90.5	3.61e-21	N/A	N/A
structural_annotation	UHGV-0062342_2	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062342_3	UniRef90_A0A4D7ASB8	441.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062342_3	693746.OBV_01680	480.0	0	N/A	N/A
structural_annotation	UHGV-0062342_3	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_4	phrog_13518	49.5	0.000000000000029	N/A	unknown function
structural_annotation	UHGV-0062342_4	PF04582	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062342_5	PF10651,NF038186	N/A	N/A	N/A	N/A
KOfam	UHGV-0062342_6	K10804	56.6	3.3e-16	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0062342_6	phrog_11541	101.1	5.2e-30	N/A	unknown function
Pfam	UHGV-0062342_6	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0062342_6	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0062342_7	K01447	77.6	2.3e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0062342_7	phrog_1794	144.6	9.30462e-43	amidase	lysis
UniRef90	UHGV-0062342_7	UniRef90_R5AZE6	273.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0062342_7	1235793.C809_04312	204.0	0	Ami_2	N/A
Pfam	UHGV-0062342_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0062342_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0062342_7	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_8	phrog_962	78.3	1.1e-22	holin	lysis
UniRef90	UHGV-0062342_8	UniRef90_A0A3R5XPP7	104.0	1.44e-27	Phage holin	N/A
eggNOG-mapper	UHGV-0062342_8	553973.CLOHYLEM_04415	102.0	1.13e-27	Bacteriophage holin	N/A
Pfam	UHGV-0062342_8	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0062342_8	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0062342_8	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062342_8	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062342_10	693746.OBV_01600	91.7	2.04e-17	N/A	N/A
UniRef90	UHGV-0062342_11	UniRef90_A0A2U1CD16	612.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0062342_11	1519439.JPJG01000011_gene53	306.0	0	N/A	N/A
PHROG	UHGV-0062342_12	phrog_474	54.4	0.0000000000000038	phosphofructokinase	other
UniRef90	UHGV-0062342_12	UniRef90_K1TIM3	132.0	2.12e-37	N/A	N/A
eggNOG-mapper	UHGV-0062342_12	1203606.HMPREF1526_00237	60.1	0.000000000548	N/A	N/A
Pfam	UHGV-0062342_12	PF19905	N/A	N/A	N/A	DUF6378
KOfam	UHGV-0062342_14	K03091	47.8	0.00000000000028	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0062342_14	UniRef90_A0A5C7QA78	56.6	0.00000219	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-0062342_14	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0062342_14	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
NCBIFam	UHGV-0062342_14	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0062342_14	PF04542,MF_00961,TIGR02835,COG1191	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062342_18	UniRef90_UPI001A9B9FB4	265.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0062342_18	1410632.JHWW01000006_gene695	205.0	0	N/A	N/A
Pfam	UHGV-0062342_18	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0062342_18	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_20	phrog_1770	52.6	0.0000000000000089	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0062342_20	536233.CLO_1822	124.0	4.94e-34	N/A	N/A
structural_annotation	UHGV-0062342_20	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_21	phrog_8489	204.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062342_21	UniRef90_UPI0013778123	211.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0062342_21	1139219.I569_00860	193.0	0	DnaD domain protein	N/A
COG	UHGV-0062342_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0062342_21	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0062342_22	K03111	74.0	3.8e-21	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0062342_22	phrog_44	66.6	6.2e-19	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062342_22	UniRef90_A0A4Z0CEI8	60.8	0.0000000176	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0062342_22	1121382.JQKG01000033_gene3153	60.8	0.00000000735	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0062342_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0062342_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0062342_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_23	phrog_14970	251.6	0	N/A	unknown function
UniRef90	UHGV-0062342_23	UniRef90_A0A3P6JH63	211.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0062342_23	411468.CLOSCI_00315	216.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0062342_23	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0062342_23	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0062342_23	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0062342_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0062342_27	PF13744,NF007481,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062342_29	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062342_31	1131462.DCF50_p2449	54.3	0.00000113	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0062342_31	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0062342_31	COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0062342_33	K22300	60.7	3.8e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0062342_33	phrog_4	51.4	0.000000000000027	transcriptional repressor	transcription regulation
UniRef90	UHGV-0062342_33	UniRef90_A0A174LY22	142.0	1.93996e-41	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0062342_33	445972.ANACOL_03315	141.0	9.30042e-42	N/A	N/A
Pfam	UHGV-0062342_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0062342_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0062342_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0062342_35	K07729	56.8	5.6e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0062342_35	phrog_3	44.8	0.000000000005	transcriptional repressor	transcription regulation
UniRef90	UHGV-0062342_35	UniRef90_R5AVU4	95.1	3.08e-24	CI-like repressor	N/A
eggNOG-mapper	UHGV-0062342_35	1869.MB27_26960	53.1	0.0000000244	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0062342_35	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0062342_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0062342_35	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0062342_37	K14059	119.7	4.8e-35	int; integrase	N/A
PHROG	UHGV-0062342_37	phrog_1	134.3	1.2e-39	integrase	integration and excision
UniRef90	UHGV-0062342_37	UniRef90_A0A2Z4QB94	297.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0062342_37	411468.CLOSCI_00325	87.4	2.08e-16	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0062342_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0062342_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0062342_37	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062342_39	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_41	phrog_15863	169.5	0	N/A	unknown function
UniRef90	UHGV-0062342_41	UniRef90_K1RTM4	223.0	0	DnaJ domain protein	N/A
eggNOG-mapper	UHGV-0062342_41	693746.OBV_01780	173.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0062342_41	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-0062342_41	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0062342_42	PF01402,NF040976,COG4710	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062342_43	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_44	phrog_7339	133.6	1.4e-39	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062342_44	UniRef90_A0A8F2F0X6	268.0	0	Metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0062342_44	443254.Marpi_0340	105.0	3.12e-24	metallophosphoesterase	N/A
Pfam	UHGV-0062342_44	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0062342_44	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0062342_44	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
KOfam	UHGV-0062342_46	K06909	132.6	4.2e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0062342_46	phrog_979	135.5	1.99993e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0062342_46	UniRef90_A0A1M5YHQ5	646.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0062342_46	693746.OBV_01690	522.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0062342_46	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0062342_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0062342_46	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0062342_48	phrog_156	140.3	3.89981e-42	portal protein	head and packaging
eggNOG-mapper	UHGV-0062342_48	693746.OBV_01670	560.0	0	N/A	N/A
structural_annotation	UHGV-0062342_48	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0062342_50	K07486	179.6	0	K07486; transposase	N/A
PHROG	UHGV-0062342_50	phrog_2199	217.4	0	transposase	integration and excision
UniRef90	UHGV-0062342_50	UniRef90_R5D3R3	738.0	0	Putative transposase	N/A
eggNOG-mapper	UHGV-0062342_50	1519439.JPJG01000063_gene1810	734.0	0	Transposase	N/A
Pfam	UHGV-0062342_50	PF01548	N/A	N/A	Transposase	DEDD_Tnp_IS110
Pfam	UHGV-0062342_50	PF02371	N/A	N/A	Transposase IS116/IS110/IS902 family	Transposase_20
NCBIFam	UHGV-0062342_50	NF033542.1	N/A	N/A	IS110 family transposase	N/A
COG	UHGV-0062342_50	COG3547	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0062342_50	PF01548,PF02371,MF_00651,NF033542,COG3547	N/A	N/A	N/A	N/A