UHGV-0062477 (vOTU-035069)

Viral Genome: UHGV-0062477

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0062477
vOTU ID	vOTU-035069
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_90046
Associated BioSample	SAMEA2466974
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9732
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.44
Jumbo phage	No

Genome content
Genome length (bp)	33,044
GC content	39.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	91%
Average CDS length (bps)	511.53
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0062477_1	phrog_18190	99.2	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0062477_1	1449050.JNLE01000003_gene3879	91.3	3.97e-17	N/A	N/A
KOfam	UHGV-0062477_6	K22300	46.5	0.0000000000008	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0062477_6	phrog_2967	48.0	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0062477_6	UniRef90_UPI001D029144	191.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0062477_6	411470.RUMGNA_03230	113.0	4.46e-30	sequence-specific DNA binding	N/A
COG	UHGV-0062477_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0062477_6	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062477_7	UniRef90_UPI001D0090A6	130.0	2.19e-38	N/A	N/A
eggNOG-mapper	UHGV-0062477_7	411470.RUMGNA_03231	95.9	2.96e-25	N/A	N/A
Pfam	UHGV-0062477_7	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0062477_7	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0062477_7	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0062477_8	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
structural_annotation	UHGV-0062477_8	PF10544	N/A	N/A	N/A	N/A
KOfam	UHGV-0062477_10	K07741	69.9	8.4e-20	antB; anti-repressor protein	N/A
PHROG	UHGV-0062477_10	phrog_130	253.5	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0062477_10	UniRef90_A0A265Q752	284.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_10	1120978.KB894083_gene924	256.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0062477_10	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0062477_10	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0062477_10	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0062477_10	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0062477_11	K08309	41.7	0.000000000019	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0062477_11	phrog_19890	86.0	4.4e-25	N/A	unknown function
UniRef90	UHGV-0062477_11	UniRef90_A0A352SFF8	162.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_11	1410650.JHWL01000003_gene2854	136.0	2.28e-38	lytic transglycosylase activity	N/A
Pfam	UHGV-0062477_11	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0062477_11	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0062477_11	PF01464,MF_01381,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_15	phrog_10445	94.7	9.1e-28	N/A	unknown function
UniRef90	UHGV-0062477_15	UniRef90_A0A416G2C8	199.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_15	1298920.KI911353_gene2731	143.0	2.86e-36	nuclear chromosome segregation	N/A
Pfam	UHGV-0062477_15	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0062477_15	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0062477_15	PF13514,NF000823,COG3593	N/A	N/A	N/A	N/A
KOfam	UHGV-0062477_16	K19171	51.9	0.0000000000000096	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0062477_16	phrog_21084	109.8	2.5e-32	recombinase	other
UniRef90	UHGV-0062477_16	UniRef90_R9KL45	192.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_16	397290.C810_01461	192.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0062477_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0062477_17	PF02237,MF_00257,NF037951,COG4013	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062477_18	PF09629,PF08962,MF_01354,NF007106,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_20	phrog_2185	304.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062477_20	UniRef90_UPI001BC46C39	490.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0062477_20	658655.HMPREF0988_00886	384.0	0	N/A	N/A
Pfam	UHGV-0062477_20	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0062477_20	NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0062477_21	K06940	48.1	0.00000000000024	N/A	N/A
PHROG	UHGV-0062477_21	phrog_32498	154.0	0	N/A	unknown function
UniRef90	UHGV-0062477_21	UniRef90_A0A173SAY4	142.0	3.91999e-41	Flagellin N-methylase	N/A
eggNOG-mapper	UHGV-0062477_21	397290.C810_01479	131.0	1.25e-37	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-0062477_21	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
PHROG	UHGV-0062477_22	phrog_25456	75.5	9.1e-23	N/A	unknown function
KOfam	UHGV-0062477_23	K00953	40.0	0.000000000034	FLAD1; FAD synthetase [EC:2.7.7.2]	N/A
PHROG	UHGV-0062477_23	phrog_424	47.4	0.00000000000034	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0062477_23	UniRef90_A0A412RQP5	221.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_23	1151292.QEW_4547	121.0	6.84e-31	N/A	N/A
Pfam	UHGV-0062477_23	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0062477_23	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0062477_23	PF01507,NF002537,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_24	phrog_424	70.4	2.6e-20	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0062477_24	UniRef90_A0A412RQR2	318.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_24	1280696.ATVY01000096_gene1971	205.0	0	N/A	N/A
Pfam	UHGV-0062477_24	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0062477_24	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0062477_25	phrog_392	55.1	0.0000000000000018	metal-dependent hydrolase	other
UniRef90	UHGV-0062477_25	UniRef90_R7BIJ8	108.0	3.49e-30	Putative phage-related hydrolase	N/A
eggNOG-mapper	UHGV-0062477_25	1122985.HMPREF1991_02241	83.6	5.65e-19	N/A	N/A
Pfam	UHGV-0062477_25	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
COG	UHGV-0062477_25	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
PHROG	UHGV-0062477_26	phrog_392	110.1	1.2e-32	metal-dependent hydrolase	other
UniRef90	UHGV-0062477_26	UniRef90_A0A412RQX2	322.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0062477_26	1232453.BAIF02000057_gene1138	103.0	1.72e-25	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
COG	UHGV-0062477_26	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0062477_26	PF02112,MF_00457,NF041851,COG2220	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062477_29	1235790.C805_00035	75.1	0.0000000000000026	N/A	N/A
COG	UHGV-0062477_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0062477_33	phrog_874	170.0	0	N/A	unknown function
UniRef90	UHGV-0062477_33	UniRef90_A0A4P6LRJ9	191.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_33	411468.CLOSCI_00298	187.0	0	N/A	N/A
structural_annotation	UHGV-0062477_33	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_34	phrog_10714	46.7	0.00000000000023	N/A	unknown function
UniRef90	UHGV-0062477_34	UniRef90_R6RDV7	52.0	0.0000013	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0062477_34	537007.BLAHAN_05460	47.8	0.00000985	N/A	N/A
PHROG	UHGV-0062477_36	phrog_19106	187.2	0	N/A	unknown function
UniRef90	UHGV-0062477_36	UniRef90_A0A1C5S1S5	253.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-0062477_36	397290.C810_01509	253.0	0	N/A	N/A
structural_annotation	UHGV-0062477_36	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_37	phrog_59	145.6	1.09301e-43	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062477_37	UniRef90_A0A173Z8S3	156.0	2.8026e-43	NUMOD4 motif	N/A
eggNOG-mapper	UHGV-0062477_37	679190.HMPREF0650_0103	139.0	1.45e-37	NUMOD4 motif	N/A
PADLOC	UHGV-0062477_37	HEase_00016	79.9	9.1e-25	homing endonuclease	RM
Pfam	UHGV-0062477_37	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0062477_37	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0062477_37	PF08220	N/A	N/A	DeoR-like helix-turn-helix domain	HTH_DeoR
KOfam	UHGV-0062477_39	K00558	183.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0062477_39	phrog_29443	219.0	0	N/A	unknown function
UniRef90	UHGV-0062477_39	UniRef90_A0A1C5S2H5	605.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0062477_39	1235800.C819_02255	506.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0062477_39	MTase_II_00020	116.9	3.4e-34	Type II methyltransferase	RM
Pfam	UHGV-0062477_39	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0062477_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0062477_39	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0062477_40	K00558	48.5	0.000000000000093	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0062477_40	phrog_23072	163.2	0	DNA methyltransferase	other
UniRef90	UHGV-0062477_40	UniRef90_A0A1Q6UYZ8	240.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0062477_40	665956.HMPREF1032_00142	174.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0062477_40	DrmMII_00008	54.3	0.0000000000000037	DrmMII	DISARM
Pfam	UHGV-0062477_40	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0062477_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0062477_41	phrog_5708	233.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062477_41	UniRef90_UPI001BB8B78A	218.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0062477_41	1415774.U728_867	186.0	0	DnaD domain protein	N/A
COG	UHGV-0062477_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0062477_41	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_42	phrog_9804	166.6	0	N/A	unknown function
UniRef90	UHGV-0062477_42	UniRef90_A0A412RQW3	228.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_42	1121344.JHZO01000003_gene981	147.0	3.54949e-42	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0062477_42	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0062477_42	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_45	phrog_16129	76.8	1e-22	excisionase	integration and excision
UniRef90	UHGV-0062477_45	UniRef90_R6C2W3	160.0	0	DNA binding domain excisionase family	N/A
eggNOG-mapper	UHGV-0062477_45	411489.CLOL250_01459	91.7	1.19e-22	Excisionase from transposon Tn916	N/A
Pfam	UHGV-0062477_45	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-0062477_45	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0062477_45	PF09035,TIGR01764,COG2771,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0062477_46	K14059	258.5	0	int; integrase	N/A
PHROG	UHGV-0062477_46	phrog_1	239.7	0	integrase	integration and excision
UniRef90	UHGV-0062477_46	UniRef90_R6CA87	567.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0062477_46	658088.HMPREF0987_01414	525.0	0	Phage integrase family	N/A
Pfam	UHGV-0062477_46	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0062477_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0062477_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0062477_46	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_48	phrog_21718	44.9	0.0000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0062477_48	658655.HMPREF0988_00919	106.0	6.94e-27	N/A	N/A
structural_annotation	UHGV-0062477_48	NF033819	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062477_49	658655.HMPREF0988_00918	85.5	3.86e-21	N/A	N/A
PHROG	UHGV-0062477_50	phrog_16490	199.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0062477_50	397290.C810_01328	212.0	0	N/A	N/A
UniRef90	UHGV-0062477_51	UniRef90_R7B8I7	84.3	1.99e-20	Ribbon-helix-helix protein CopG family	N/A
eggNOG-mapper	UHGV-0062477_51	663952.SDD27957_09060	50.1	0.000000134	N/A	N/A
Pfam	UHGV-0062477_51	PF12651	N/A	N/A	Ribbon-helix-helix domain	RHH_3
structural_annotation	UHGV-0062477_51	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062477_52	PF07875	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_53	phrog_373	121.5	8.2e-36	anti-repressor	transcription regulation
UniRef90	UHGV-0062477_53	UniRef90_R7BII5	229.0	0	AntA domain-containing protein	N/A
eggNOG-mapper	UHGV-0062477_53	1460640.JCM19046_3538	199.0	0	ORF6N domain	N/A
Pfam	UHGV-0062477_53	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-0062477_53	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0062477_54	phrog_20016	238.4	0	N/A	unknown function
UniRef90	UHGV-0062477_54	UniRef90_A0A285PT46	167.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0062477_54	397290.C810_05214	237.0	0	N/A	N/A
structural_annotation	UHGV-0062477_54	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062477_55	658655.HMPREF0988_00915	67.8	0.0000000000616	N/A	N/A
PHROG	UHGV-0062477_56	phrog_1233	42.8	0.0000000000079	N/A	unknown function
eggNOG-mapper	UHGV-0062477_56	397290.C810_01336	87.0	1.13e-20	N/A	N/A
structural_annotation	UHGV-0062477_57	PF10944	N/A	N/A	N/A	N/A