UHGV-0062528 (vOTU-003650)

Viral Genome: UHGV-0062528

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0062528
vOTU ID	vOTU-003650
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_78882
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.5
Jumbo phage	No

Genome content
Genome length (bp)	38,118
GC content	41.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	90%
Average CDS length (bps)	505.41
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0062528_3	K18830	63.4	3.5e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0062528_3	phrog_8	54.9	7.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0062528_3	UniRef90_R5GZQ0	133.0	5.56e-38	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0062528_3	748224.HMPREF9436_01444	129.0	6.52e-37	N/A	N/A
PADLOC	UHGV-0062528_3	retron_type_VI_hth_cluster2_1	49.9	0.000000000000015	N/A	Retron
Pfam	UHGV-0062528_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0062528_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0062528_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062528_4	1235790.C805_00014	45.4	0.00000877	N/A	N/A
structural_annotation	UHGV-0062528_6	PF13601,MF_01819,NF038251,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_7	phrog_7964	184.3	0	N/A	unknown function
UniRef90	UHGV-0062528_7	UniRef90_A0A285PUH1	116.0	1.13e-28	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-0062528_7	411470.RUMGNA_02189	88.2	7.8e-19	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0062528_7	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0062528_7	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0062528_7	NF040481	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062528_9	UniRef90_A0A395X9S5	149.0	1.4013e-45	Toxin HipA	N/A
eggNOG-mapper	UHGV-0062528_9	478749.BRYFOR_05417	85.5	5.17e-21	N/A	N/A
structural_annotation	UHGV-0062528_11	PF10922,TIGR03741	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_13	phrog_253	116.2	2.7e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062528_13	UniRef90_UPI001030DCF8	170.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0062528_13	411470.RUMGNA_02192	158.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0062528_13	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0062528_13	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_14	phrog_7838	144.7	6.89439e-43	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0062528_14	742767.HMPREF9456_02052	180.0	0	N/A	N/A
structural_annotation	UHGV-0062528_14	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_15	phrog_72	46.2	0.00000000000041	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0062528_15	411468.CLOSCI_00314	120.0	7.74e-32	N/A	N/A
structural_annotation	UHGV-0062528_15	PF05772,NF007281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062528_16	UniRef90_UPI00164A90AD	128.0	4.29e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0062528_16	1235800.C819_02254	141.0	7.39045e-42	HNH nucleases	N/A
PHROG	UHGV-0062528_17	phrog_244	70.3	3.8e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0062528_17	33035.JPJF01000122_gene2460	161.0	0	N/A	N/A
structural_annotation	UHGV-0062528_17	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_18	phrog_10469	110.3	1.1e-34	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062528_18	UniRef90_A0A174WT25	274.0	0	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-0062528_18	97138.C820_00775	184.0	0	DnaD domain protein	N/A
COG	UHGV-0062528_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0062528_18	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0062528_19	K02315	140.1	1.99993e-41	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0062528_19	phrog_50	136.7	2.1e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062528_19	UniRef90_UPI001D06D025	520.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0062528_19	397291.C804_01604	244.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-0062528_19	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0062528_19	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0062528_19	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062528_21	PF18350,TIGR00739,COG1862	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062528_22	NF041070	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062528_23	UniRef90_UPI001C0F2DCC	85.5	4.95e-21	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0062528_24	COG4446	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062528_26	457412.RSAG_01159	247.0	0	N/A	N/A
structural_annotation	UHGV-0062528_26	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0062528_28	cluster_11670	42.7	0.0000000431	NA	N/A
eggNOG-mapper	UHGV-0062528_29	397291.C804_00971	74.7	0.00000000000000179	N/A	N/A
structural_annotation	UHGV-0062528_29	PF02701,TIGR03655,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_30	phrog_20593	72.0	6.2e-21	N/A	unknown function
PHROG	UHGV-0062528_31	phrog_8684	113.5	1e-33	N/A	unknown function
UniRef90	UHGV-0062528_31	UniRef90_A0A3A6GQT2	182.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0062528_31	457412.RSAG_01162	104.0	1.53e-26	YopX protein	N/A
Pfam	UHGV-0062528_31	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0062528_31	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0062528_31	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0062528_34	397288.C806_00098	60.5	0.00000000167	N/A	N/A
PHROG	UHGV-0062528_37	phrog_10714	49.5	0.000000000000077	N/A	unknown function
PHROG	UHGV-0062528_40	phrog_33130	106.1	1.3e-31	N/A	unknown function
structural_annotation	UHGV-0062528_40	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0062528_42	K06909	404.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0062528_42	phrog_3717	175.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0062528_42	UniRef90_UPI001C0ECFC2	781.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0062528_42	33035.JPJF01000106_gene3136	652.0	0	Terminase small subunit	N/A
Pfam	UHGV-0062528_42	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0062528_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0062528_42	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0062528_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0062528_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0062528_42	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_44	phrog_533	288.3	0	portal protein	head and packaging
UniRef90	UHGV-0062528_44	UniRef90_A0A1C6CDM8	714.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0062528_44	33035.JPJF01000106_gene3135	547.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0062528_44	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062528_45	UniRef90_UPI0018835F0C	75.1	0.0000000000619	collagen-like protein	N/A
structural_annotation	UHGV-0062528_45	PF15432	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_46	phrog_2310	41.1	0.000000000019	N/A	unknown function
PHROG	UHGV-0062528_47	phrog_581	255.4	0	minor head protein	head and packaging
UniRef90	UHGV-0062528_47	UniRef90_A0A395X791	717.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0062528_47	476272.RUMHYD_01761	387.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0062528_47	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0062528_47	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062528_47	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_48	phrog_3754	112.5	3e-33	N/A	unknown function
eggNOG-mapper	UHGV-0062528_48	476272.RUMHYD_01764	185.0	0	N/A	N/A
UniRef90	UHGV-0062528_49	UniRef90_A0A395X7A4	181.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0062528_49	476272.RUMHYD_01766	122.0	3.74e-35	N/A	N/A
PHROG	UHGV-0062528_50	phrog_21718	132.4	2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0062528_50	476272.RUMHYD_01768	129.0	4.55e-36	N/A	N/A
PHROG	UHGV-0062528_51	phrog_22984	92.6	2.7e-27	N/A	unknown function
PHROG	UHGV-0062528_52	phrog_16490	191.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0062528_52	397290.C810_01328	181.0	0	N/A	N/A
PHROG	UHGV-0062528_53	phrog_20016	208.3	0	N/A	unknown function
UniRef90	UHGV-0062528_53	UniRef90_A0A285PT46	171.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0062528_53	397290.C810_05214	193.0	0	N/A	N/A
structural_annotation	UHGV-0062528_53	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_54	phrog_28802	224.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0062528_54	476272.RUMHYD_01772	199.0	0	N/A	N/A
PHROG	UHGV-0062528_55	phrog_194	67.0	3.9e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0062528_55	UniRef90_UPI001D14C9C8	182.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0062528_55	476272.RUMHYD_01775	197.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0062528_55	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0062528_55	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_56	phrog_544	164.2	0	major head protein	head and packaging
UniRef90	UHGV-0062528_56	UniRef90_A0A395X7A1	661.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0062528_56	1232453.BAIF02000011_gene3359	385.0	0	N/A	N/A
Pfam	UHGV-0062528_56	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0062528_56	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_57	phrog_541	97.4	8.1e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0062528_57	476272.RUMHYD_01778	115.0	1.61e-30	N/A	N/A
PHROG	UHGV-0062528_58	phrog_1233	78.5	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0062528_58	1256908.HMPREF0373_00487	79.0	1.47e-17	N/A	N/A
structural_annotation	UHGV-0062528_58	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_59	phrog_1129	77.4	1.3e-22	holin	lysis
UniRef90	UHGV-0062528_59	UniRef90_A0A395X7B2	173.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0062528_59	411461.DORFOR_00721	114.0	3.57e-32	N/A	N/A
Pfam	UHGV-0062528_59	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0062528_59	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_60	phrog_3366	100.1	2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0062528_60	476272.RUMHYD_01779	152.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0062528_60	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_61	phrog_556	64.1	1.2e-18	minor head protein	head and packaging
UniRef90	UHGV-0062528_61	UniRef90_UPI000E4989EB	291.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0062528_61	476272.RUMHYD_01780	162.0	0	N/A	N/A
Pfam	UHGV-0062528_61	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0062528_61	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_62	phrog_3266	91.2	9.4e-27	tail completion	connector
eggNOG-mapper	UHGV-0062528_62	476272.RUMHYD_01781	149.0	1.26117e-43	N/A	N/A
structural_annotation	UHGV-0062528_62	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_63	phrog_3099	133.2	1.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0062528_63	411902.CLOBOL_00129	169.0	0	N/A	N/A
structural_annotation	UHGV-0062528_63	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_64	phrog_11299	70.0	3.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0062528_64	33035.JPJF01000106_gene3125	61.6	0.000000000414	N/A	N/A
structural_annotation	UHGV-0062528_64	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_65	phrog_706	123.8	1.4e-36	N/A	unknown function
UniRef90	UHGV-0062528_65	UniRef90_UPI001BAD00AD	205.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0062528_65	411459.RUMOBE_01383	326.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0062528_65	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0062528_65	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_66	phrog_1535	478.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0062528_66	UniRef90_A0A173R880	514.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0062528_66	476272.RUMHYD_01785	507.0	0	phage tail tape measure protein	N/A
COG	UHGV-0062528_66	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062528_66	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_67	phrog_1194	41.8	0.000000000016	N/A	unknown function
structural_annotation	UHGV-0062528_67	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0062528_68	phrog_6616	545.4	0	tail protein	tail
UniRef90	UHGV-0062528_68	UniRef90_A0A395X7B3	1420.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0062528_68	33035.JPJF01000043_gene1002	255.0	0	N/A	N/A
structural_annotation	UHGV-0062528_68	PF05113,PF02010,NF033848,NF007392,COG3500	N/A	N/A	N/A	N/A