UHGV-0062644 (vOTU-083681)

Viral Genome: UHGV-0062644

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0062644
vOTU ID	vOTU-083681
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_91734
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9181
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.59
Jumbo phage	No

Genome content
Genome length (bp)	33,266
GC content	27.39%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	94%
Average CDS length (bps)	567.16
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0062644_1	K06400	350.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0062644_1	phrog_95	357.4	0	integrase	integration and excision
UniRef90	UHGV-0062644_1	UniRef90_UPI0004041467	907.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0062644_1	935948.KE386495_gene1360	347.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0062644_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0062644_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0062644_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0062644_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0062644_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_2	phrog_17572	148.2	1.26117e-44	N/A	unknown function
UniRef90	UHGV-0062644_2	UniRef90_A0A0H4LIJ8	122.0	1.98e-34	Prophage ps2 protein 03	N/A
eggNOG-mapper	UHGV-0062644_2	1499683.CCFF01000017_gene3026	127.0	6.41e-37	N/A	N/A
AcrCatalog	UHGV-0062644_2	cluster_25152	147.0	0	NA	N/A
structural_annotation	UHGV-0062644_2	PF13783,MF_01122	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_3	phrog_87	46.7	0.0000000000004	metallo-protease	other
UniRef90	UHGV-0062644_3	UniRef90_UPI00124C33E6	52.8	0.00000937	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0062644_3	411465.PEPMIC_00707	204.0	0	Zn peptidase	N/A
COG	UHGV-0062644_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0062644_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0062644_4	K22300	47.5	0.00000000000043	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0062644_4	phrog_2967	63.9	2.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0062644_4	UniRef90_UPI00040DE91B	242.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0062644_4	411465.PEPMIC_00709	142.0	2.04029e-42	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0062644_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0062644_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0062644_4	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062644_5	UniRef90_UPI00041C5CBE	145.0	2.8026e-44	N/A	N/A
eggNOG-mapper	UHGV-0062644_5	562981.HMPREF0428_01421	65.9	0.000000000000215	N/A	N/A
Pfam	UHGV-0062644_5	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0062644_5	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0062644_5	PF05339,NF041575,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0062644_13	K03111	108.2	1.3e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0062644_13	phrog_44	104.8	1.1e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062644_13	UniRef90_A8SKL9	265.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0062644_13	411465.PEPMIC_00719	265.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0062644_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0062644_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0062644_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0062644_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0062644_13	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_15	phrog_98	94.3	1.1e-27	N/A	unknown function
UniRef90	UHGV-0062644_15	UniRef90_UPI0004299263	244.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0062644_15	649747.HMPREF0083_01040	75.1	9.84e-16	YopX protein	N/A
Pfam	UHGV-0062644_15	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0062644_15	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0062644_15	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_17	phrog_3584	259.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0062644_17	411465.PEPMIC_00724	377.0	0	N/A	N/A
structural_annotation	UHGV-0062644_17	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_18	phrog_14085	51.0	0.000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0062644_18	397290.C810_00855	62.0	0.00000000000962	N/A	N/A
PHROG	UHGV-0062644_22	phrog_98	102.5	3.2e-30	N/A	unknown function
UniRef90	UHGV-0062644_22	UniRef90_UPI0003FA1FFB	257.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0062644_22	565664.EFXG_03933	80.5	1.09e-17	YopX protein	N/A
Pfam	UHGV-0062644_22	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0062644_22	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0062644_22	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_23	phrog_25754	51.5	0.000000000000011	N/A	unknown function
structural_annotation	UHGV-0062644_23	PF18195,MF_01077,NF000936,COG4568	N/A	N/A	N/A	N/A
KOfam	UHGV-0062644_24	K03700	93.4	3.6e-27	recU; recombination protein U	N/A
PHROG	UHGV-0062644_24	phrog_843	142.2	2.10055e-42	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062644_24	UniRef90_UPI00040412AF	358.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0062644_24	411465.PEPMIC_00727	223.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0062644_24	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0062644_24	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0062644_24	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_25	phrog_355	77.8	1.2e-22	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062644_25	UniRef90_UPI00042076A1	233.0	0	N/A	N/A
Pfam	UHGV-0062644_25	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0062644_25	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0062644_27	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0062644_28	K07451	51.0	0.000000000000031	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0062644_28	phrog_119	92.6	4.4e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062644_28	UniRef90_UPI00041CBED2	184.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0062644_28	1121423.JONT01000065_gene1369	111.0	1.66e-30	HNH nucleases	N/A
Pfam	UHGV-0062644_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0062644_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0062644_28	TIGR02646	N/A	N/A	N/A	N/A
KOfam	UHGV-0062644_29	K00571	142.6	3.59994e-42	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0062644_29	phrog_498	445.2	0	DNA methyltransferase	other
UniRef90	UHGV-0062644_29	UniRef90_UPI0003F655FC	800.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0062644_29	572544.Ilyop_1048	381.0	0	DNA methylase	N/A
PADLOC	UHGV-0062644_29	MTase_II_00015	379.9	0	Type II methyltransferase	RM
Pfam	UHGV-0062644_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0062644_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0062644_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0062644_29	PF01555,PF02195,NF010253,TIGR00180,COG0863,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_30	phrog_361	96.8	2e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0062644_30	UniRef90_UPI0004135207	239.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0062644_30	1033744.CAEL01000029_gene1286	107.0	1.44e-28	Phage terminase, small subunit	N/A
Pfam	UHGV-0062644_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0062644_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_31	phrog_9	315.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0062644_31	UniRef90_UPI001F456348	1131.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0062644_31	1121871.AUAT01000030_gene1023	675.0	0	Phage Terminase	N/A
Pfam	UHGV-0062644_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0062644_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0062644_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0062644_31	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_32	phrog_12	147.8	6.86636e-44	portal protein	head and packaging
UniRef90	UHGV-0062644_32	UniRef90_UPI0003F6B99E	706.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0062644_32	1497679.EP56_05720	402.0	0	Phage portal protein	N/A
Pfam	UHGV-0062644_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0062644_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0062644_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0062644_32	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0062644_33	K06904	140.8	1.40004e-41	N/A	N/A
PHROG	UHGV-0062644_33	phrog_80	169.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0062644_33	UniRef90_UPI0003F76F78	354.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0062644_33	1121423.JONT01000041_gene945	192.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0062644_33	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0062644_33	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0062644_33	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0062644_33	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_34	phrog_10	158.0	0	major head protein	head and packaging
UniRef90	UHGV-0062644_34	UniRef90_UPI000413E728	635.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0062644_34	386043.lwe1225	253.0	0	Phage capsid family	N/A
Pfam	UHGV-0062644_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0062644_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0062644_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0062644_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_35	phrog_3673	48.0	0.00000000000011	Arc-like repressor	transcription regulation
PHROG	UHGV-0062644_36	phrog_2550	67.8	9.9e-20	N/A	unknown function
UniRef90	UHGV-0062644_36	UniRef90_UPI000421CD39	181.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0062644_36	202752.JL53_03760	61.6	0.0000000000332	N/A	N/A
Pfam	UHGV-0062644_36	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0062644_36	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_37	phrog_1951	86.6	2e-25	head-tail adaptor	connector
UniRef90	UHGV-0062644_37	UniRef90_UPI00040ABCFE	192.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0062644_37	1121428.DESHY_20140___1	68.9	0.000000000000075	head-tail adaptor	N/A
Pfam	UHGV-0062644_37	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0062644_37	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0062644_37	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0062644_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_38	phrog_5	43.0	0.000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0062644_38	UniRef90_UPI0004026F50	232.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0062644_38	1111134.HMPREF1253_0379	78.2	5.66e-17	N/A	N/A
Pfam	UHGV-0062644_38	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0062644_38	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062644_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_40	phrog_88	131.2	7.1e-39	major tail protein	tail
UniRef90	UHGV-0062644_40	UniRef90_A0A134AER6	258.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0062644_40	411473.RUMCAL_01618	95.9	5.16e-22	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0062644_40	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0062644_40	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_43	phrog_58	330.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0062644_43	UniRef90_UPI000403B375	1478.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0062644_43	665956.HMPREF1032_00108	410.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0062644_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0062644_43	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0062644_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0062644_43	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_45	phrog_18110	175.9	0	N/A	unknown function
UniRef90	UHGV-0062644_45	UniRef90_UPI0003FF0D5B	1435.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0062644_45	1280689.AUJC01000007_gene3306	114.0	6.4e-23	Phage minor structural protein	N/A
Pfam	UHGV-0062644_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0062644_45	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0062644_46	phrog_372	267.1	0	tail protein	tail
UniRef90	UHGV-0062644_46	UniRef90_UPI0008FE8894	173.0	1.01034e-42	N/A	N/A
eggNOG-mapper	UHGV-0062644_46	411465.PEPMIC_00747	650.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0062644_46	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0062644_46	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_48	phrog_4105	43.2	0.0000000000072	N/A	unknown function
PHROG	UHGV-0062644_49	phrog_443	46.4	0.0000000000011	holin	lysis
UniRef90	UHGV-0062644_49	UniRef90_UPI00123B6218	121.0	7.96e-35	holin	N/A
eggNOG-mapper	UHGV-0062644_49	1469948.JPNB01000002_gene3855	80.9	1.82e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0062644_49	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0062644_49	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_50	phrog_998	134.5	1e-39	endolysin	lysis
UniRef90	UHGV-0062644_50	UniRef90_UPI0012389E27	576.0	0	GW dipeptide domain-containing protein	N/A
eggNOG-mapper	UHGV-0062644_50	411465.PEPMIC_00519	190.0	0	domain protein	N/A
Pfam	UHGV-0062644_50	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
Pfam	UHGV-0062644_50	PF13457	N/A	N/A	GW (Gly-Tryp) dipeptide domain	GW
COG	UHGV-0062644_50	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
KOfam	UHGV-0062644_52	K04763	89.2	6.5e-26	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0062644_52	phrog_1	108.9	6.7e-32	integrase	integration and excision
UniRef90	UHGV-0062644_52	UniRef90_UPI000427E133	556.0	0	site-specific integrase	N/A
Pfam	UHGV-0062644_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0062644_52	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0062644_52	PF00589,PF02899,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0062644_54	phrog_2277	46.2	0.0000000000007	N/A	unknown function
eggNOG-mapper	UHGV-0062644_54	469604.HMPREF0946_00817	57.4	0.000000000415	N/A	N/A