UHGV-0062652 (vOTU-170134)

Viral Genome: UHGV-0062652

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0062652
vOTU ID	vOTU-170134
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_87455
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.65 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9751
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.56
Jumbo phage	No

Genome content
Genome length (bp)	24,288
GC content	42.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	92%
Average CDS length (bps)	466.38
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0062652_1	phrog_37898	161.2	0	N/A	unknown function
UniRef90	UHGV-0062652_1	UniRef90_UPI000E434E8B	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062652_1	877414.ATWA01000082_gene1189	108.0	1.93e-29	N/A	N/A
Pfam	UHGV-0062652_1	PF10387	N/A	N/A	N/A	DUF2442
structural_annotation	UHGV-0062652_1	PF10387	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_2	phrog_14333	111.7	3.7e-33	N/A	unknown function
UniRef90	UHGV-0062652_2	UniRef90_UPI000E4481CD	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062652_2	521003.COLINT_03302	134.0	4.00001e-40	N/A	N/A
Pfam	UHGV-0062652_2	PF13711	N/A	N/A	N/A	DUF4160
structural_annotation	UHGV-0062652_2	PF13711	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_3	phrog_15412	72.2	6.9e-21	N/A	unknown function
UniRef90	UHGV-0062652_3	UniRef90_UPI00157065F8	625.0	0	YbjQ family protein	N/A
eggNOG-mapper	UHGV-0062652_3	1408323.JQKK01000036_gene3079	103.0	6.63e-25	Putative heavy-metal-binding	N/A
Pfam	UHGV-0062652_3	PF01906	N/A	N/A	Putative heavy-metal-binding	YbjQ_1
COG	UHGV-0062652_3	COG0393	N/A	N/A	N/A	N/A
KOfam	UHGV-0062652_5	K22300	55.6	0.0000000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0062652_5	phrog_8	65.4	1.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0062652_5	UniRef90_UPI0015D46463	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0062652_5	1235790.C805_01005	105.0	1.58e-25	Helix-turn-helix domain protein	N/A
Pfam	UHGV-0062652_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0062652_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0062652_6	UniRef90_UPI00156E942D	140.0	4.13944e-42	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0062652_6	887325.HMPREF0381_0113	75.5	2.85e-17	N/A	N/A
Pfam	UHGV-0062652_6	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-0062652_6	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_11	phrog_750	89.3	3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0062652_11	97139.C824_00051	103.0	2.71e-27	N/A	N/A
structural_annotation	UHGV-0062652_11	PF13835,NF040858	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_16	phrog_3777	80.9	9.2e-24	N/A	unknown function
UniRef90	UHGV-0062652_16	UniRef90_UPI00142FF24A	65.9	0.000000000035	N/A	N/A
eggNOG-mapper	UHGV-0062652_16	411462.DORLON_00813	63.5	0.0000000000552	N/A	N/A
structural_annotation	UHGV-0062652_16	PF18441	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062652_17	PF19128	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_19	phrog_434	341.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062652_19	UniRef90_UPI0015715373	586.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0062652_19	411902.CLOBOL_00693	358.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0062652_19	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0062652_19	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0062652_19	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0062652_19	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0062652_20	K07455	287.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0062652_20	phrog_148	280.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062652_20	UniRef90_UPI00156E3AA2	534.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0062652_20	658088.HMPREF0987_00529	355.0	0	RecT family	N/A
Pfam	UHGV-0062652_20	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0062652_20	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0062652_20	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0062652_20	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0062652_21	K01160	43.0	0.000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0062652_21	phrog_140	114.0	1.2e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062652_21	UniRef90_UPI001C01AEC7	286.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0062652_21	411461.DORFOR_00015	134.0	2.69e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0062652_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0062652_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0062652_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_22	phrog_2562	156.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062652_22	UniRef90_UPI001C030B8A	545.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062652_22	411461.DORFOR_00014	231.0	0	N/A	N/A
Pfam	UHGV-0062652_22	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0062652_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0062652_22	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_23	phrog_463	221.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-0062652_23	UniRef90_UPI00156FBCEE	459.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0062652_23	411490.ANACAC_00813	275.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0062652_23	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0062652_23	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0062652_23	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0062652_23	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_24	phrog_29887	54.0	0.0000000000000038	N/A	unknown function
UniRef90	UHGV-0062652_24	UniRef90_UPI001379B79E	76.3	4.9e-17	N/A	N/A
PHROG	UHGV-0062652_25	phrog_9300	89.7	3.7e-26	N/A	unknown function
KOfam	UHGV-0062652_26	K03111	131.6	1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0062652_26	phrog_44	135.2	4.6e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062652_26	UniRef90_UPI001C026824	274.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0062652_26	658088.HMPREF0987_02000	207.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0062652_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0062652_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0062652_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0062652_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0062652_26	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_28	phrog_15077	139.2	5.29999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0062652_28	742765.HMPREF9457_02110	139.0	8.38e-37	N/A	N/A
PHROG	UHGV-0062652_31	phrog_11237	89.5	4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0062652_31	610130.Closa_0738	157.0	0	N/A	N/A
PHROG	UHGV-0062652_32	phrog_8680	254.5	0	N/A	unknown function
UniRef90	UHGV-0062652_32	UniRef90_UPI0015711ED3	337.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062652_32	411470.RUMGNA_02208	298.0	0	N/A	N/A
Pfam	UHGV-0062652_32	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0062652_32	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_34	phrog_9479	190.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0062652_34	511680.BUTYVIB_01226	61.2	0.000000000449	N/A	N/A
structural_annotation	UHGV-0062652_34	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_36	phrog_606	102.4	3.8e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0062652_36	UniRef90_UPI0004BAB6EB	168.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0062652_36	397290.C810_05185	192.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0062652_36	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0062652_36	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0062652_37	K06909	145.8	4.40008e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0062652_37	phrog_10250	220.5	0	N/A	unknown function
UniRef90	UHGV-0062652_37	UniRef90_A0A2V2D9F3	896.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0062652_37	903814.ELI_3215	644.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0062652_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0062652_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0062652_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0062652_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_38	phrog_64	397.2	0	portal protein	head and packaging
UniRef90	UHGV-0062652_38	UniRef90_A0A2V2D7F4	926.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0062652_38	742733.HMPREF9469_01826	654.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0062652_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0062652_38	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0062652_38	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_39	phrog_2841	352.2	0	minor head protein	head and packaging
UniRef90	UHGV-0062652_39	UniRef90_UPI00157127C3	984.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0062652_39	742733.HMPREF9469_01825	436.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0062652_39	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0062652_39	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0062652_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062652_39	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062652_40	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_41	phrog_3675	115.5	2e-34	N/A	unknown function
UniRef90	UHGV-0062652_41	UniRef90_A0A1M7JY59	183.0	0	YjcQ protein	N/A
eggNOG-mapper	UHGV-0062652_41	1235802.C823_04879	112.0	7.3e-31	YjcQ protein	N/A
Pfam	UHGV-0062652_41	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0062652_41	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062652_42	UniRef90_A0A0A8WED4	63.9	0.00000000000361	Ribbon-helix-helix protein, copG family	N/A
eggNOG-mapper	UHGV-0062652_42	1235800.C819_00492	63.9	0.000000000000605	N/A	N/A
structural_annotation	UHGV-0062652_42	PF01402,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0062652_43	K07741	82.2	1.5e-23	antB; anti-repressor protein	N/A
PHROG	UHGV-0062652_43	phrog_373	137.2	1.3e-40	anti-repressor	transcription regulation
UniRef90	UHGV-0062652_43	UniRef90_UPI00156F56E8	503.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0062652_43	658655.HMPREF0988_02543	316.0	0	Phage regulatory protein	N/A
Pfam	UHGV-0062652_43	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0062652_43	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0062652_43	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0062652_43	PF10552,PF08346,NF008573,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_45	phrog_1048	177.6	0	N/A	unknown function
UniRef90	UHGV-0062652_45	UniRef90_A0A2V2D8W4	337.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062652_45	457412.RSAG_01107	259.0	0	N/A	N/A
Pfam	UHGV-0062652_45	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0062652_45	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0062652_45	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_46	phrog_13199	82.1	3.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0062652_46	476272.RUMHYD_02851	99.0	1.2e-26	N/A	N/A
PHROG	UHGV-0062652_47	phrog_172	170.0	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0062652_47	UniRef90_UPI00156EF0C7	375.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062652_47	742733.HMPREF9469_01824	206.0	0	N/A	N/A
Pfam	UHGV-0062652_47	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0062652_47	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0062652_48	phrog_247	50.5	0.000000000000036	major head protein	head and packaging
UniRef90	UHGV-0062652_48	UniRef90_A0A3D0XTQ9	104.0	9.4e-27	Coat protein (Fragment)	N/A
eggNOG-mapper	UHGV-0062652_48	1304866.K413DRAFT_3038	144.0	7.39003e-41	N/A	N/A