UHGV-0063432 (vOTU-031301)

Viral Genome: UHGV-0063432

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0063432
vOTU ID	vOTU-031301
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_100852
Associated BioSample	SAMEA2466968
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.45 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9748
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.64
Jumbo phage	No

Genome content
Genome length (bp)	31,407
GC content	43.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	92%
Average CDS length (bps)	615.77
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0063432_1	K01448	97.8	1.4e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0063432_1	phrog_435	125.4	6.5e-37	endolysin	lysis
UniRef90	UHGV-0063432_1	UniRef90_A0A1I6LPA9	174.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0063432_1	946235.CAER01000065_gene2429	158.0	3.36312e-44	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0063432_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0063432_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0063432_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0063432_1	PF01520,PF08239,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_2	phrog_962	65.0	1.2e-18	holin	lysis
UniRef90	UHGV-0063432_2	UniRef90_A0A134AEP1	91.3	3.77e-22	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-0063432_2	1120998.AUFC01000030_gene2252	79.0	3.93e-18	Bacteriophage holin	N/A
Pfam	UHGV-0063432_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0063432_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0063432_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0063432_2	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_3	phrog_1863	65.1	7.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0063432_3	718252.FP2_04900	90.9	5.84e-23	N/A	N/A
PHROG	UHGV-0063432_5	phrog_16573	46.4	0.0000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0063432_5	1160721.RBI_I01572	79.7	0.0000000000000119	N/A	N/A
PHROG	UHGV-0063432_6	phrog_1067	227.2	0	minor head protein	head and packaging
UniRef90	UHGV-0063432_6	UniRef90_A0A1M6KY09	196.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0063432_6	929506.CbC4_1228	183.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0063432_6	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0063432_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0063432_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0063432_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_7	phrog_33	51.3	0.000000000000012	distal tail protein Dit	tail
UniRef90	UHGV-0063432_7	UniRef90_UPI001623B610	63.2	0.0000000352	phage tail protein	N/A
eggNOG-mapper	UHGV-0063432_7	1032362.F6K8S1_9CAUD	60.5	0.0000000595	Phage tail protein	N/A
structural_annotation	UHGV-0063432_7	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0063432_8	K20478	57.9	3.1e-17	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0063432_8	phrog_13339	389.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0063432_8	UniRef90_A0A3G4YYJ9	308.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0063432_8	764299.STRIC_0111	310.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0063432_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0063432_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0063432_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0063432_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_10	phrog_88	120.9	9.3e-36	major tail protein	tail
UniRef90	UHGV-0063432_10	UniRef90_A0A897H1J0	98.6	4.5e-22	Phage tail protein	N/A
eggNOG-mapper	UHGV-0063432_10	545697.HMPREF0216_00917	100.0	1.22e-23	phage major tail protein	N/A
Pfam	UHGV-0063432_10	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0063432_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0063432_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0063432_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0063432_12	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
PHROG	UHGV-0063432_13	phrog_19734	52.6	0.000000000000007	N/A	unknown function
eggNOG-mapper	UHGV-0063432_13	1211817.CCAT010000053_gene2134	60.8	0.000000000112	N/A	N/A
PHROG	UHGV-0063432_14	phrog_749	46.0	0.00000000000086	N/A	unknown function
eggNOG-mapper	UHGV-0063432_14	1158607.UAU_01033	50.8	0.000000644	N/A	N/A
PHROG	UHGV-0063432_15	phrog_10	105.1	7.8e-31	major head protein	head and packaging
UniRef90	UHGV-0063432_15	UniRef90_UPI0008304135	322.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0063432_15	349161.Dred_2604	303.0	0	Phage capsid family	N/A
Pfam	UHGV-0063432_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0063432_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0063432_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0063432_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_16	phrog_16951	247.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0063432_16	428125.CLOLEP_03662	188.0	0	N/A	N/A
structural_annotation	UHGV-0063432_16	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_17	phrog_12	94.0	1.3e-27	portal protein	head and packaging
UniRef90	UHGV-0063432_17	UniRef90_UPI001A9A8447	182.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0063432_17	1235792.C808_00084	149.0	4.72e-38	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0063432_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0063432_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0063432_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0063432_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_18	phrog_9	241.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0063432_18	UniRef90_UPI001C46A542	519.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0063432_18	1211817.CCAT010000053_gene2129	512.0	0	Phage Terminase	N/A
Pfam	UHGV-0063432_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0063432_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0063432_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0063432_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_19	phrog_5110	87.3	1.1e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0063432_19	UniRef90_UPI00156D89BA	73.2	0.0000000000000205	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0063432_19	1235792.C808_00082	62.4	0.0000000000551	N/A	N/A
Pfam	UHGV-0063432_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0063432_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_20	phrog_119	72.9	4.6e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0063432_20	UniRef90_A0A139CWY3	87.4	2.53e-20	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0063432_20	1211817.CCAT010000008_gene937	80.1	2.46e-18	HNH endonuclease	N/A
Pfam	UHGV-0063432_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0063432_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0063432_22	phrog_24518	50.9	0.000000000000009	N/A	unknown function
PHROG	UHGV-0063432_25	phrog_3136	88.6	3.6e-26	N/A	unknown function
UniRef90	UHGV-0063432_25	UniRef90_UPI001C26B029	74.3	0.000000000000914	ASCH domain-containing protein	N/A
structural_annotation	UHGV-0063432_25	PF12961,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0063432_28	K03427	164.7	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0063432_28	phrog_6380	362.5	0	DNA methyltransferase	other
UniRef90	UHGV-0063432_28	UniRef90_UPI001B3C6DA9	559.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0063432_28	1444306.JFZC01000034_gene2643	306.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0063432_28	MTase_I_00002	90.1	9.9e-27	Type I methyltransferase	RM
Pfam	UHGV-0063432_28	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0063432_28	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0063432_28	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_29	phrog_15609	121.5	7.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-0063432_29	1514668.JOOA01000001_gene225	73.9	0.00000000000495	N/A	N/A
structural_annotation	UHGV-0063432_29	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_30	phrog_8470	244.4	0	N/A	unknown function
UniRef90	UHGV-0063432_30	UniRef90_UPI00164B8CC7	215.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0063432_30	693746.OBV_25400	184.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0063432_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0063432_30	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0063432_31	phrog_38338	85.3	7.9e-25	N/A	unknown function
UniRef90	UHGV-0063432_31	UniRef90_UPI00137B3A8C	81.3	7.68e-17	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0063432_31	1514668.JOOA01000001_gene227	65.9	0.00000000000603	N/A	N/A
PHROG	UHGV-0063432_32	phrog_3584	197.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0063432_32	UniRef90_I2E8X7	121.0	1.78e-29	Gp31	N/A
eggNOG-mapper	UHGV-0063432_32	1514668.JOOA01000001_gene223	151.0	6.16992e-42	N/A	N/A
COG	UHGV-0063432_33	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0063432_37	phrog_28990	47.1	0.00000000000037	N/A	unknown function
PHROG	UHGV-0063432_41	phrog_12732	40.7	0.000000000042	N/A	unknown function
UniRef90	UHGV-0063432_42	UniRef90_A0A3D4T7E0	65.5	0.00000000000151	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0063432_42	768486.EHR_02785	54.3	0.00000000678	N/A	N/A
structural_annotation	UHGV-0063432_42	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0063432_43	K22300	73.4	4e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0063432_43	phrog_8	62.8	8.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0063432_43	UniRef90_A0A173V842	82.8	3.62e-18	Transcriptional repressor DicA	N/A
eggNOG-mapper	UHGV-0063432_43	645991.Sgly_0310	80.5	2.58e-17	PFAM Peptidase S24 S26A S26B, conserved region	N/A
Pfam	UHGV-0063432_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0063432_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0063432_43	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0063432_45	PF12773	N/A	N/A	Double zinc ribbon	DZR
KOfam	UHGV-0063432_47	K06400	179.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0063432_47	phrog_95	165.6	0	integrase	integration and excision
UniRef90	UHGV-0063432_47	UniRef90_A0A843H3J5	209.0	0	Recombinase family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0063432_47	537013.CLOSTMETH_01697	215.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0063432_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0063432_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0063432_47	PF00239,NF033518,COG1961	N/A	N/A	N/A	N/A