UHGV-0067003 (vOTU-129121)

Viral Genome: UHGV-0067003

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0067003
vOTU ID	vOTU-129121
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_87443
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.19 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.49
Jumbo phage	No

Genome content
Genome length (bp)	33,809
GC content	51.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	94%
Average CDS length (bps)	663.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0067003_1	phrog_27197	66.0	6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0067003_1	886882.PPSC2_p0363	94.7	5.25e-22	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0067003_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0067003_2	K01449	49.7	0.000000000000061	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0067003_2	phrog_30550	143.9	6.19374e-43	N/A	unknown function
UniRef90	UHGV-0067003_2	UniRef90_A0A6N9PX25	122.0	7.97e-32	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0067003_2	1519439.JPJG01000077_gene920	101.0	1.79e-25	Cell Wall Hydrolase	N/A
Pfam	UHGV-0067003_2	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
structural_annotation	UHGV-0067003_2	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_3	phrog_757	216.1	0	DNA methyltransferase	other
UniRef90	UHGV-0067003_3	UniRef90_UPI0006A41431	247.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0067003_3	1235790.C805_00032	222.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0067003_3	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0067003_3	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067003_4	UniRef90_A0A845MZZ9	80.5	3e-17	N/A	N/A
Pfam	UHGV-0067003_4	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0067003_5	UniRef90_R6QWY1	101.0	4.05e-26	28	N/A
Pfam	UHGV-0067003_5	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0067003_5	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0067003_9	phrog_10714	46.0	0.00000000000073	N/A	unknown function
structural_annotation	UHGV-0067003_9	PF15188	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_14	phrog_18716	138.7	1.6e-41	N/A	unknown function
UniRef90	UHGV-0067003_14	UniRef90_A0A1J0GJP7	141.0	3.53996e-41	N/A	N/A
eggNOG-mapper	UHGV-0067003_14	665959.HMPREF1013_00856	112.0	2.07e-30	N/A	N/A
Pfam	UHGV-0067003_14	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0067003_14	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_15	phrog_5781	88.2	9.5e-26	N/A	unknown function
UniRef90	UHGV-0067003_15	UniRef90_A0A413FXK8	103.0	6.59e-27	N/A	N/A
eggNOG-mapper	UHGV-0067003_15	573061.Clocel_3558	90.5	2.34e-22	N/A	N/A
Pfam	UHGV-0067003_15	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0067003_15	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0067003_15	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_17	phrog_4973	56.4	5.2e-16	N/A	unknown function
UniRef90	UHGV-0067003_17	UniRef90_UPI000E3485C3	62.0	0.0000000000116	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0067003_17	935261.JAGL01000009_gene1175	50.1	0.00000011	Helix-turn-helix domain	N/A
Pfam	UHGV-0067003_17	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
PHROG	UHGV-0067003_19	phrog_25567	40.0	0.000000000049	N/A	unknown function
UniRef90	UHGV-0067003_19	UniRef90_UPI00164AED9E	84.3	7.45e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0067003_19	1235802.C823_04625	52.0	0.00000233	N/A	N/A
structural_annotation	UHGV-0067003_19	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0067003_23	K06909	145.0	5.99756e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0067003_23	phrog_979	160.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0067003_23	UniRef90_A0A3C0NMI6	639.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0067003_23	1410650.JHWL01000003_gene2834	559.0	0	N/A	N/A
Pfam	UHGV-0067003_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0067003_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0067003_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_24	phrog_156	120.5	6.4e-36	portal protein	head and packaging
UniRef90	UHGV-0067003_24	UniRef90_A0A8D9UH10	275.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0067003_24	748224.HMPREF9436_01396	277.0	0	N/A	N/A
PHROG	UHGV-0067003_25	phrog_156	132.2	3.3e-39	portal protein	head and packaging
eggNOG-mapper	UHGV-0067003_25	1410650.JHWL01000003_gene2833	239.0	0	N/A	N/A
KOfam	UHGV-0067003_26	K07584	64.1	2.7e-18	N/A	N/A
PHROG	UHGV-0067003_26	phrog_4478	76.7	2.3e-22	peptidase	other
UniRef90	UHGV-0067003_26	UniRef90_UPI0005504E05	57.4	0.0000000166	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0067003_26	944564.HMPREF9200_1505	48.1	0.00000981	Cysteine protease Prp	N/A
Pfam	UHGV-0067003_26	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0067003_26	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067003_26	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_27	phrog_13908	165.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0067003_27	1410650.JHWL01000003_gene2831	82.0	0.00000000000000789	N/A	N/A
PHROG	UHGV-0067003_28	phrog_1357	199.8	0	major head protein	head and packaging
UniRef90	UHGV-0067003_28	UniRef90_A0A2V2CFL5	535.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0067003_28	1410650.JHWL01000003_gene2830	263.0	0	N/A	N/A
NCBIFam	UHGV-0067003_28	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0067003_28	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_30	phrog_12105	101.2	8.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-0067003_30	1519439.JPJG01000060_gene1891	62.8	0.000000000066	N/A	N/A
PHROG	UHGV-0067003_31	phrog_511	218.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0067003_31	1226322.HMPREF1545_00785	238.0	0	N/A	N/A
structural_annotation	UHGV-0067003_31	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067003_33	1410650.JHWL01000003_gene2815	96.7	1.46e-18	N/A	N/A
eggNOG-mapper	UHGV-0067003_34	693746.OBV_01590	479.0	0	N/A	N/A
Pfam	UHGV-0067003_34	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0067003_34	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0067003_35	1007096.BAGW01000031_gene143	57.4	0.00000199	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0067003_35	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0067003_36	phrog_10993	94.1	1.5e-27	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0067003_36	UniRef90_UPI00082CBED4	112.0	1.77e-25	N/A	N/A
eggNOG-mapper	UHGV-0067003_36	718252.FP2_16970	107.0	4.09e-24	N/A	N/A
Pfam	UHGV-0067003_36	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0067003_36	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067003_37	1519439.JPJG01000060_gene1895	131.0	9.23e-36	N/A	N/A
structural_annotation	UHGV-0067003_37	PF10618	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067003_38	UniRef90_R6I1X1	194.0	0	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	N/A
eggNOG-mapper	UHGV-0067003_38	1203606.HMPREF1526_01926	79.0	9.74e-16	N/A	N/A
KOfam	UHGV-0067003_39	K01447	55.0	0.0000000000000016	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0067003_39	phrog_20388	167.1	0	endolysin	lysis
UniRef90	UHGV-0067003_39	UniRef90_D6QWN4	258.0	0	PlyM20	N/A
eggNOG-mapper	UHGV-0067003_39	1203606.HMPREF1526_01931	240.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0067003_39	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0067003_39	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0067003_39	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_40	phrog_1863	74.3	8.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0067003_40	748224.HMPREF9436_00408	98.2	6.72e-26	N/A	N/A
PHROG	UHGV-0067003_41	phrog_10091	110.9	8.4e-33	holin	lysis
UniRef90	UHGV-0067003_41	UniRef90_A0A1Y4RHF4	130.0	5.3e-38	Phage holin	N/A
eggNOG-mapper	UHGV-0067003_41	445975.COLSTE_02144	115.0	1.58e-32	Bacteriophage holin	N/A
Pfam	UHGV-0067003_41	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0067003_41	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0067003_41	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067003_41	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067003_42	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0067003_43	phrog_3754	100.8	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0067003_43	476272.RUMHYD_01764	146.0	7.9874e-44	N/A	N/A
PHROG	UHGV-0067003_44	phrog_21718	98.7	4.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0067003_44	397290.C810_05210	94.7	7.16e-23	N/A	N/A
PHROG	UHGV-0067003_45	phrog_22984	76.3	3.5e-22	N/A	unknown function
PHROG	UHGV-0067003_46	phrog_16490	150.0	1.96182e-44	N/A	unknown function
eggNOG-mapper	UHGV-0067003_46	1408437.JNJN01000043_gene803	145.0	2.21999e-40	N/A	N/A
PHROG	UHGV-0067003_47	phrog_20016	186.3	0	N/A	unknown function
UniRef90	UHGV-0067003_47	UniRef90_A0A285PT46	196.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0067003_47	1226322.HMPREF1545_00077	164.0	0	N/A	N/A
structural_annotation	UHGV-0067003_47	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067003_48	PF12510	N/A	N/A	N/A	N/A