UHGV-0067445 (vOTU-069446)

Viral Genome: UHGV-0067445

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0067445
vOTU ID	vOTU-069446
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_75483
Associated BioSample	SAMEA2338641
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.41
Jumbo phage	No

Genome content
Genome length (bp)	37,234
GC content	58.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	94%
Average CDS length (bps)	536.49
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0067445_2	UniRef90_R5III5	90.9	2.45e-23	N/A	N/A
eggNOG-mapper	UHGV-0067445_2	1235835.C814_02396	58.2	0.0000000000371	N/A	N/A
UniRef90	UHGV-0067445_3	UniRef90_A0A8F0WD75	77.0	0.0000000000000149	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0067445_3	1378168.N510_03079	65.5	0.000000000136	N/A	N/A
structural_annotation	UHGV-0067445_4	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_5	phrog_16490	53.7	0.0000000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0067445_5	641112.ACOK01000103_gene525	52.4	0.00001	N/A	N/A
PHROG	UHGV-0067445_8	phrog_14030	138.3	4.90006e-41	N/A	unknown function
UniRef90	UHGV-0067445_8	UniRef90_R6LL81	237.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0067445_8	1121866.AUGK01000003_gene1444	91.7	1.76e-18	amidase activity	N/A
COG	UHGV-0067445_8	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0067445_9	phrog_6918	95.2	4.3e-28	holin	lysis
UniRef90	UHGV-0067445_9	UniRef90_A0A316QCY7	102.0	3.48e-26	Holin	N/A
eggNOG-mapper	UHGV-0067445_9	1297617.JPJD01000020_gene301	100.0	2.43e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0067445_9	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0067445_9	PF09682,TIGR01673	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067445_12	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_14	phrog_29409	41.5	0.000000000013	N/A	unknown function
PHROG	UHGV-0067445_15	phrog_37900	321.9	0	N/A	unknown function
UniRef90	UHGV-0067445_15	UniRef90_UPI001C3EA4DF	414.0	0	N/A	N/A
eggNOG-mapper	UHGV-0067445_15	552398.HMPREF0866_03098	261.0	0	N/A	N/A
Pfam	UHGV-0067445_15	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0067445_15	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0067445_15	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067445_16	411471.SUBVAR_06929	302.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0067445_16	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0067445_17	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067445_18	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_19	phrog_26795	128.4	1.1e-38	N/A	unknown function
UniRef90	UHGV-0067445_19	UniRef90_A0A5J6T4K8	132.0	1.55e-31	Minor tail protein	N/A
eggNOG-mapper	UHGV-0067445_19	1382315.JPOI01000001_gene271	134.0	3.3e-33	N/A	N/A
structural_annotation	UHGV-0067445_19	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_20	phrog_37549	80.9	4e-27	virion structural protein	head and packaging
UniRef90	UHGV-0067445_20	UniRef90_A0A3D0W045	222.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0067445_20	1195236.CTER_5103	124.0	7.71e-27	N/A	N/A
structural_annotation	UHGV-0067445_20	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_21	phrog_8462	114.4	8.1e-34	tail length tape measure protein	tail
UniRef90	UHGV-0067445_21	UniRef90_A0A174XMM8	172.0	6.16571e-43	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0067445_21	1195236.CTER_5104	210.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0067445_21	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0067445_21	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_22	phrog_2115	40.3	0.000000000058	tail protein	tail
eggNOG-mapper	UHGV-0067445_22	1286171.EAL2_c05410	49.7	0.00000537	N/A	N/A
structural_annotation	UHGV-0067445_22	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_23	phrog_88	83.0	3.7e-24	major tail protein	tail
UniRef90	UHGV-0067445_23	UniRef90_S0FUN2	114.0	1.88e-28	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0067445_23	1195236.CTER_5106	114.0	3.15e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0067445_23	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0067445_23	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067445_23	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067445_24	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067445_25	1487921.DP68_11350	56.2	0.0000000088	N/A	N/A
structural_annotation	UHGV-0067445_25	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_26	phrog_1951	74.6	9.8e-22	head-tail adaptor	connector
UniRef90	UHGV-0067445_26	UniRef90_A0A1F8UNT5	65.9	0.00000000000615	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0067445_26	1094508.Tsac_2422	51.6	0.000000448	Phage head-tail joining protein	N/A
Pfam	UHGV-0067445_26	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0067445_26	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0067445_26	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0067445_26	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_27	phrog_5223	40.7	0.000000000032	neck protein	connector
UniRef90	UHGV-0067445_27	UniRef90_E6MGY0	56.2	0.0000000284	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0067445_27	887929.HMP0721_1264	56.2	0.00000000477	N/A	N/A
PHROG	UHGV-0067445_28	phrog_10	179.8	0	major head protein	head and packaging
UniRef90	UHGV-0067445_28	UniRef90_UPI00189AE5FE	397.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0067445_28	1280689.AUJC01000011_gene1521	384.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0067445_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0067445_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0067445_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0067445_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0067445_29	K01358	132.7	4.1e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0067445_29	phrog_94	203.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0067445_29	UniRef90_UPI0018979DC8	209.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0067445_29	1280689.AUJC01000011_gene1520	194.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0067445_29	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0067445_29	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0067445_29	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_30	phrog_12	177.8	0	portal protein	head and packaging
UniRef90	UHGV-0067445_30	UniRef90_UPI001898FCCE	504.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0067445_30	626523.GCWU000342_01027	501.0	0	Portal protein	N/A
Pfam	UHGV-0067445_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0067445_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0067445_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_31	phrog_9	383.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0067445_31	UniRef90_UPI001D07C789	790.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0067445_31	1203606.HMPREF1526_00981	739.0	0	Terminase	N/A
Pfam	UHGV-0067445_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0067445_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0067445_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0067445_31	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_32	phrog_1066	128.4	2.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-0067445_32	1341151.ASZU01000004_gene265	125.0	1.14e-35	N/A	N/A
structural_annotation	UHGV-0067445_32	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_33	phrog_119	49.1	0.000000000000075	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067445_33	UniRef90_A0A174XSZ8	126.0	1.45e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0067445_33	1235793.C809_01915	122.0	3.02e-34	HNH endonuclease	N/A
Pfam	UHGV-0067445_33	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0067445_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0067445_34	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-0067445_34	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_35	phrog_3584	114.2	1.1e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0067445_35	537013.CLOSTMETH_02141	76.3	0.0000000000000352	N/A	N/A
structural_annotation	UHGV-0067445_35	PF21578,MF_00360	N/A	N/A	N/A	N/A
KOfam	UHGV-0067445_36	K00571	99.6	3.4e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0067445_36	phrog_23224	178.6	0	DNA methyltransferase	other
UniRef90	UHGV-0067445_36	UniRef90_D4K450	352.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0067445_36	718252.FP2_06750	352.0	0	DNA methylase	N/A
PADLOC	UHGV-0067445_36	MTase_II_00172	91.5	2.4e-28	Type II methyltransferase	RM
Pfam	UHGV-0067445_36	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0067445_36	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0067445_36	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_42	phrog_374	56.6	5.4e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0067445_42	1423807.BACO01000037_gene1103	66.6	0.00000000000647	N/A	N/A
PHROG	UHGV-0067445_43	phrog_190	100.3	2e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067445_43	UniRef90_UPI0006C2AC63	126.0	3.51e-34	N/A	N/A
eggNOG-mapper	UHGV-0067445_43	693746.OBV_25250	120.0	1.15e-32	N/A	N/A
Pfam	UHGV-0067445_43	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0067445_43	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_45	phrog_38832	82.8	2.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0067445_45	1232443.BAIA02000078_gene48	104.0	5.71e-26	N/A	N/A
PHROG	UHGV-0067445_46	phrog_3136	131.6	2.9e-39	N/A	unknown function
UniRef90	UHGV-0067445_46	UniRef90_A0A3D0HBD2	115.0	5.86e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0067445_46	479431.Namu_2706	57.0	0.0000000348	ASCH	N/A
Pfam	UHGV-0067445_46	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0067445_46	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0067445_46	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0067445_47	K00558	161.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0067445_47	phrog_363	246.5	0	DNA methyltransferase	other
UniRef90	UHGV-0067445_47	UniRef90_G4KRB8	339.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0067445_47	693746.OBV_01900	339.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0067445_47	MTase_II_00058	121.6	2.9e-36	Type II methyltransferase	RM
Pfam	UHGV-0067445_47	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0067445_47	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0067445_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0067445_47	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067445_51	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067445_52	NF041247	N/A	N/A	N/A	N/A
PHROG	UHGV-0067445_55	phrog_1468	54.6	8.1e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0067445_55	UniRef90_A0A1Y3RFS1	58.2	0.00000000122	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0067445_56	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-0067445_61	K22300	60.4	4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0067445_61	phrog_8	57.6	2.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0067445_61	UniRef90_A0A1Y4H5B2	116.0	3.15e-31	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0067445_61	748224.HMPREF9436_01444	115.0	2.46e-31	N/A	N/A
PADLOC	UHGV-0067445_61	retron_type_VI_hth_cluster2_1	45.0	0.0000000000023	N/A	Retron
Pfam	UHGV-0067445_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0067445_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0067445_61	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0067445_63	UniRef90_UPI001CB7843A	79.0	0.00000000000132	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0067445_63	1348338.ADILRU_1828	72.8	0.0000000000297	TM2 domain	N/A
COG	UHGV-0067445_63	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-0067445_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0067445_64	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0067445_64	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0067445_65	K06400	248.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0067445_65	phrog_95	264.7	0	integrase	integration and excision
UniRef90	UHGV-0067445_65	UniRef90_G9YSD9	412.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0067445_65	1121344.JHZO01000001_gene439	405.0	0	resolvase	N/A
Pfam	UHGV-0067445_65	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0067445_65	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0067445_65	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0067445_65	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0067445_65	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A