UHGV-0068985 (vOTU-130341)

Viral Genome: UHGV-0068985

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0068985
vOTU ID	vOTU-130341
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_111226
Associated BioSample	SAMEA2580110
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.65 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9755
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.4
Jumbo phage	No

Genome content
Genome length (bp)	36,113
GC content	40.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	91%
Average CDS length (bps)	645.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0068985_1	K22300	58.6	1.7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0068985_1	phrog_8	67.5	3.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0068985_1	UniRef90_A0A373KL01	203.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0068985_1	1235797.C816_03924	88.6	1.99e-21	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0068985_1	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0068985_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0068985_1	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_2	phrog_11900	83.1	2.4e-24	N/A	unknown function
UniRef90	UHGV-0068985_2	UniRef90_A0A2N0UW35	618.0	0	Fido domain-containing protein	N/A
eggNOG-mapper	UHGV-0068985_2	1235799.C818_03247	570.0	0	Fic/DOC family	N/A
Pfam	UHGV-0068985_2	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-0068985_2	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0068985_2	PF02661,PF20586,TIGR02613,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-0068985_3	K14059	209.0	0	int; integrase	N/A
PHROG	UHGV-0068985_3	phrog_1	183.9	0	integrase	integration and excision
UniRef90	UHGV-0068985_3	UniRef90_A0A2N0ULT2	743.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0068985_3	428125.CLOLEP_02743	318.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0068985_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0068985_3	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0068985_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068985_4	UniRef90_A0A374DTF3	100.0	4.58e-24	N/A	N/A
KOfam	UHGV-0068985_5	K21463	41.7	0.000000000015	tcaA; membrane-associated protein TcaA	N/A
UniRef90	UHGV-0068985_5	UniRef90_A0A412DWX4	610.0	0	Tetratricopeptide repeat protein	N/A
Pfam	UHGV-0068985_5	PF13428	N/A	N/A	Tetratricopeptide repeat	TPR_14
KOfam	UHGV-0068985_6	K01356	112.3	7.8e-33	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0068985_6	phrog_4	127.4	1.5e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0068985_6	UniRef90_A0A2N0UXR0	413.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0068985_6	246199.CUS_5911	139.0	1.75e-38	N/A	N/A
Pfam	UHGV-0068985_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0068985_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0068985_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0068985_6	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068985_7	UniRef90_A0A2N0UXQ7	127.0	3.61e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0068985_7	78346.BRUM_0420	47.0	0.00000696	N/A	N/A
Pfam	UHGV-0068985_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0068985_7	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068985_9	UniRef90_A0A2N0ULT9	137.0	4.22001e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0068985_9	1283300.ATXB01000001_gene1737	45.8	0.0000097	DNA excision	N/A
Pfam	UHGV-0068985_9	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0068985_9	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0068985_9	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0068985_9	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0068985_12	PF04570,COG2075	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_13	phrog_674	154.5	0	N/A	unknown function
UniRef90	UHGV-0068985_13	UniRef90_A0A374N9T8	564.0	0	N/A	N/A
eggNOG-mapper	UHGV-0068985_13	1408437.JNJN01000039_gene373	186.0	0	N/A	N/A
Pfam	UHGV-0068985_13	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0068985_13	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0068985_14	K07455	198.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0068985_14	phrog_148	213.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0068985_14	UniRef90_A0A374N9W0	519.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0068985_14	428127.EUBDOL_01509	275.0	0	RecT family	N/A
Pfam	UHGV-0068985_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0068985_14	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0068985_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0068985_14	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0068985_15	K06167	50.2	0.000000000000038	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0068985_15	phrog_392	122.2	5.6e-36	metal-dependent hydrolase	other
UniRef90	UHGV-0068985_15	UniRef90_A0A373XYI8	462.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0068985_15	665956.HMPREF1032_03101	163.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0068985_15	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0068985_15	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0068985_15	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_16	phrog_398	204.1	0	N/A	unknown function
UniRef90	UHGV-0068985_16	UniRef90_UPI000C7B20DA	191.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0068985_16	293826.Amet_2584	182.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0068985_16	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0068985_16	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_17	phrog_2562	133.1	3e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0068985_17	UniRef90_A0A374NA85	564.0	0	N/A	N/A
eggNOG-mapper	UHGV-0068985_17	1235790.C805_00030	155.0	1.39009e-42	N/A	N/A
Pfam	UHGV-0068985_17	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0068985_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0068985_17	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0068985_18	K02315	141.6	6.89999e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0068985_18	phrog_50	138.4	5.60001e-41	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0068985_18	UniRef90_A0A374MYR7	559.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0068985_18	1507.HMPREF0262_00302	199.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-0068985_18	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0068985_18	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0068985_18	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_19	phrog_824	137.2	6.09999e-41	N/A	unknown function
UniRef90	UHGV-0068985_19	UniRef90_A0A374MXE9	251.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0068985_19	1235792.C808_00622	130.0	4.6e-36	VRR_NUC	N/A
Pfam	UHGV-0068985_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0068985_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_20	phrog_323	78.8	4.4e-29	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0068985_20	UniRef90_UPI001C01CFF8	314.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0068985_20	756499.Desde_1065	346.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-0068985_20	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-0068985_20	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0068985_20	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_22	phrog_8684	93.2	1.2e-27	N/A	unknown function
UniRef90	UHGV-0068985_22	UniRef90_A0A374DV44	170.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0068985_22	411473.RUMCAL_00283	74.7	0.0000000000000162	YopX protein	N/A
Pfam	UHGV-0068985_22	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0068985_22	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0068985_22	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0068985_24	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0068985_25	K06909	398.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0068985_25	phrog_3717	145.9	8.40779e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0068985_25	UniRef90_A0A2N0ULW5	1033.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0068985_25	411461.DORFOR_01162	620.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0068985_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0068985_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0068985_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0068985_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0068985_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_26	phrog_533	323.8	0	portal protein	head and packaging
UniRef90	UHGV-0068985_26	UniRef90_A0A2N0ULU9	855.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0068985_26	1304866.K413DRAFT_3035	471.0	0	N/A	N/A
structural_annotation	UHGV-0068985_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_27	phrog_581	318.2	0	minor head protein	head and packaging
UniRef90	UHGV-0068985_27	UniRef90_A0A2N0ULU5	745.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0068985_27	658655.HMPREF0988_02563	366.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0068985_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0068985_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0068985_27	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_29	phrog_478	129.0	1.9e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0068985_29	UniRef90_A0A285PT53	146.0	7.31478e-43	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0068985_29	478749.BRYFOR_08526	147.0	4.62428e-44	N/A	N/A
PHROG	UHGV-0068985_30	phrog_2616	50.1	0.000000000000064	N/A	unknown function
structural_annotation	UHGV-0068985_30	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_31	phrog_194	101.0	1.5e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0068985_31	UniRef90_A0A2N0ULW9	338.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0068985_31	742765.HMPREF9457_02126	174.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0068985_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0068985_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_32	phrog_422	227.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0068985_32	693746.OBV_18090	397.0	0	N/A	N/A
structural_annotation	UHGV-0068985_32	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_33	phrog_541	80.4	2.1e-23	head-tail adaptor	connector
UniRef90	UHGV-0068985_33	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-0068985_33	1449050.JNLE01000003_gene3888	82.0	1.7e-18	N/A	N/A
PHROG	UHGV-0068985_34	phrog_3366	73.9	2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0068985_34	1449050.JNLE01000003_gene3887	89.0	6.3e-21	N/A	N/A
Pfam	UHGV-0068985_34	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0068985_34	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_35	phrog_556	118.8	1.7e-35	minor head protein	head and packaging
UniRef90	UHGV-0068985_35	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0068985_35	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0068985_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0068985_35	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_36	phrog_3266	105.3	4.3e-31	tail completion	connector
eggNOG-mapper	UHGV-0068985_36	1449050.JNLE01000003_gene3885	142.0	1.51999e-41	N/A	N/A
structural_annotation	UHGV-0068985_36	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_37	phrog_3099	147.7	5.60519e-44	N/A	unknown function
eggNOG-mapper	UHGV-0068985_37	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-0068985_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_38	phrog_11299	138.1	4.60004e-41	N/A	unknown function
eggNOG-mapper	UHGV-0068985_38	1449050.JNLE01000003_gene3883	97.8	4.31e-24	N/A	N/A
structural_annotation	UHGV-0068985_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_39	phrog_706	140.9	7.79963e-42	N/A	unknown function
UniRef90	UHGV-0068985_39	UniRef90_A0A2N0ULW2	369.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0068985_39	1160721.RBI_II00530	212.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0068985_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0068985_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_41	phrog_1535	483.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0068985_41	UniRef90_A0A2N0ULX3	2169.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0068985_41	33035.JPJF01000093_gene2243	348.0	0	phage tail tape measure protein	N/A
COG	UHGV-0068985_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0068985_41	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_42	phrog_1194	62.9	5.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0068985_42	397290.C810_05238	94.4	7.23e-23	N/A	N/A
Pfam	UHGV-0068985_42	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0068985_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0068985_43	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068985_44	UniRef90_A0A374N9Y2	158.0	3.97969e-43	N/A	N/A
structural_annotation	UHGV-0068985_44	PF01664	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_46	phrog_1863	72.2	6.2e-22	N/A	unknown function
UniRef90	UHGV-0068985_46	UniRef90_UPI001F223E8B	105.0	6.23e-28	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0068985_46	1226322.HMPREF1545_04027	75.9	3.8e-17	N/A	N/A
PHROG	UHGV-0068985_47	phrog_443	65.0	2.1e-18	holin	lysis
UniRef90	UHGV-0068985_47	UniRef90_R6R2Q3	91.3	7.14e-23	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0068985_47	1235797.C816_04172	83.2	1.96e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0068985_47	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0068985_47	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0068985_48	phrog_18591	130.6	7.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-0068985_48	1230343.CANP01000040_gene3044	186.0	0	N/A	N/A
KOfam	UHGV-0068985_49	K01448	56.9	3.7e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0068985_49	phrog_1794	84.2	2.4e-24	amidase	lysis
UniRef90	UHGV-0068985_49	UniRef90_A0A373KFY8	430.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0068985_49	1226322.HMPREF1545_03576	88.2	2.66e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0068985_49	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0068985_49	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0068985_49	PF01520,PF18342,NF038140,COG0860,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068985_50	UniRef90_UPI001B3C704F	82.8	9.43e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0068985_50	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A