UHGV-0069516 (vOTU-029857)

Viral Genome: UHGV-0069516

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0069516
vOTU ID	vOTU-029857
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_109478
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.6 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.09
Jumbo phage	No

Genome content
Genome length (bp)	32,979
GC content	55.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	90%
Average CDS length (bps)	584.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0069516_1	PF01345,NF041894	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0069516_2	1508644.SFBmNL_00103	129.0	4.06e-36	N/A	N/A
KOfam	UHGV-0069516_3	K01447	94.0	2.3e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0069516_3	phrog_1794	99.4	5e-29	amidase	lysis
UniRef90	UHGV-0069516_3	UniRef90_A0A374VU40	267.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0069516_3	411473.RUMCAL_00096	269.0	0	Ami_2	N/A
Pfam	UHGV-0069516_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0069516_3	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0069516_3	PF01510,PF20780,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_4	phrog_443	63.6	5.5e-18	holin	lysis
UniRef90	UHGV-0069516_4	UniRef90_R6R2Q3	92.4	2.59e-23	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0069516_4	1235800.C819_01425	85.1	5.86e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0069516_4	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0069516_4	PF16945	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0069516_6	641112.ACOK01000107_gene766	55.8	0.000000867	Putative cell wall binding repeat	N/A
Pfam	UHGV-0069516_6	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0069516_6	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0069516_7	phrog_1160	51.0	0.000000000000023	baseplate protein	tail
COG	UHGV-0069516_8	COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_9	phrog_5218	218.5	0	N/A	unknown function
UniRef90	UHGV-0069516_9	UniRef90_UPI0018C25D3A	257.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0069516_9	1235792.C808_03050	291.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0069516_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0069516_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0069516_11	phrog_1778	40.9	0.000000000029	N/A	unknown function
structural_annotation	UHGV-0069516_11	PF16462	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_12	phrog_280	57.8	2e-16	virion structural protein	head and packaging
UniRef90	UHGV-0069516_12	UniRef90_R7H535	189.0	0	Phage structure protein	N/A
eggNOG-mapper	UHGV-0069516_12	1121091.AUMP01000032_gene3106	54.7	0.000000127	N/A	N/A
structural_annotation	UHGV-0069516_12	PF11681,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_13	phrog_205	107.9	8.6e-32	virion structural protein	head and packaging
UniRef90	UHGV-0069516_13	UniRef90_UPI000836ABD3	129.0	1.16e-30	N/A	N/A
eggNOG-mapper	UHGV-0069516_13	1236976.JCM16418_800	108.0	4.35e-24	N/A	N/A
structural_annotation	UHGV-0069516_13	PF11863,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_14	phrog_1232	90.4	1.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0069516_14	1484479.DI14_04745	55.5	0.00000021	N/A	N/A
structural_annotation	UHGV-0069516_14	PF08873	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0069516_15	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_16	phrog_222	113.5	1.7e-33	tail protein	tail
UniRef90	UHGV-0069516_16	UniRef90_A0A6G9L6L4	118.0	8.55e-30	Tail completion protein	N/A
eggNOG-mapper	UHGV-0069516_16	1121091.AUMP01000032_gene3102	117.0	2.5e-30	N/A	N/A
PHROG	UHGV-0069516_18	phrog_29	181.0	0	major head protein	head and packaging
UniRef90	UHGV-0069516_18	UniRef90_R7H6N6	538.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0069516_18	1298920.KI911353_gene2660	277.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0069516_18	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0069516_18	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_19	phrog_909	64.8	1e-19	major head protein	head and packaging
UniRef90	UHGV-0069516_19	UniRef90_A0A0R1VNK8	59.7	0.0000000304	N/A	N/A
eggNOG-mapper	UHGV-0069516_19	1078085.HMPREF1210_01145	63.2	0.000000000153	N/A	N/A
Pfam	UHGV-0069516_19	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
Pfam	UHGV-0069516_20	PF14265	N/A	N/A	N/A	DUF4355
PHROG	UHGV-0069516_21	phrog_1048	106.0	5.6e-31	N/A	unknown function
UniRef90	UHGV-0069516_21	UniRef90_R7H3B3	163.0	0	Phage related protein	N/A
eggNOG-mapper	UHGV-0069516_21	1445809.A0A0A7AQX0_9CAUD	127.0	1.42e-37	N/A	N/A
Pfam	UHGV-0069516_21	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0069516_21	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0069516_21	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_23	phrog_115	92.3	1.6e-27	minor head protein	head and packaging
UniRef90	UHGV-0069516_23	UniRef90_A0A2K2TW69	153.0	3.45e-37	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0069516_23	1121091.AUMP01000032_gene3100	114.0	2.42e-25	Phage Mu protein F like protein	N/A
Pfam	UHGV-0069516_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0069516_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0069516_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_24	phrog_64	287.6	0	portal protein	head and packaging
UniRef90	UHGV-0069516_24	UniRef90_UPI00083154D8	436.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0069516_24	887325.HMPREF0381_0085	382.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0069516_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0069516_24	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0069516_24	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_25	K06909	390.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0069516_25	phrog_3717	238.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0069516_25	UniRef90_R7GTI0	689.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0069516_25	1235796.C815_00926	468.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0069516_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0069516_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0069516_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0069516_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0069516_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_26	K07474	93.0	7.4e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0069516_26	phrog_51	117.8	9.7e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0069516_26	UniRef90_R7GUG8	195.0	0	Prophage LambdaCh01 terminase small subunit	N/A
eggNOG-mapper	UHGV-0069516_26	1203606.HMPREF1526_00319	160.0	0	Terminase small subunit	N/A
Pfam	UHGV-0069516_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0069516_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0069516_26	PF03592	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0069516_27	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_28	phrog_478	110.7	9.4e-33	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0069516_28	UniRef90_R6R5K5	172.0	0	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0069516_28	1111121.HMPREF1247_0834	142.0	6.14049e-42	N/A	N/A
PHROG	UHGV-0069516_32	phrog_824	131.1	4.8e-39	N/A	unknown function
UniRef90	UHGV-0069516_32	UniRef90_R7GUQ9	169.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0069516_32	742738.HMPREF9460_02501	129.0	5.54e-37	VRR_NUC	N/A
Pfam	UHGV-0069516_32	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0069516_32	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_33	K17677	404.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0069516_33	phrog_16	240.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069516_33	UniRef90_R7GSU9	836.0	0	DNA or RNA helicases of superfamily II	N/A
eggNOG-mapper	UHGV-0069516_33	742738.HMPREF9460_02499	631.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0069516_33	mREase_IV_00005	108.1	5e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0069516_33	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0069516_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0069516_33	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0069516_33	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_34	phrog_8841	461.0	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069516_34	UniRef90_A0A1C6ER71	734.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0069516_34	1007096.BAGW01000023_gene149	606.0	0	N/A	N/A
Pfam	UHGV-0069516_34	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0069516_34	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0069516_34	COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_35	K03111	51.0	0.000000000000041	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0069516_35	phrog_44	49.1	0.00000000000016	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069516_35	UniRef90_R7GSV4	167.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0069516_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0069516_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0069516_35	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0069516_36	phrog_3657	364.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0069516_36	1071073.KI530540_gene3354	223.0	0	N/A	N/A
structural_annotation	UHGV-0069516_36	PF04404	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_37	K10906	77.8	1.1e-32	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0069516_37	phrog_412	291.5	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069516_37	UniRef90_R7GUS0	361.0	0	N/A	N/A
eggNOG-mapper	UHGV-0069516_37	909297.G8CLD3_9CAUD	187.0	0	N/A	N/A
Pfam	UHGV-0069516_37	PF12684	N/A	N/A	N/A	DUF3799
structural_annotation	UHGV-0069516_37	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_45	K07741	59.0	1.7e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-0069516_45	phrog_63	141.0	1.10002e-41	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0069516_45	UniRef90_UPI001C0D97C0	283.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0069516_45	1280706.AUJE01000003_gene2202	191.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0069516_45	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0069516_45	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0069516_45	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0069516_45	PF09669,PF03374,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_49	K22300	51.8	0.000000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0069516_49	phrog_8	70.9	2.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0069516_49	UniRef90_R7F9Y3	71.2	0.000000000000149	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0069516_49	1094508.Tsac_0840	62.8	0.0000000000579	transcriptional regulator, XRE family	N/A
Pfam	UHGV-0069516_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0069516_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0069516_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0069516_50	K11641	86.2	4e-25	natR; two-component system, LytTR family, response regulator NatR	N/A
PHROG	UHGV-0069516_50	phrog_8810	73.3	3.5e-21	N/A	unknown function
UniRef90	UHGV-0069516_50	UniRef90_A0A352TI42	292.0	0	Stage 0 sporulation protein A homolog	N/A
eggNOG-mapper	UHGV-0069516_50	657322.FPR_13310	58.9	0.000000154	cheY-homologous receiver domain	N/A
Pfam	UHGV-0069516_50	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0069516_50	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0069516_50	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
KOfam	UHGV-0069516_51	K07473	73.4	5.5e-21	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-0069516_51	phrog_2737	52.2	0.0000000000000086	N/A	unknown function
UniRef90	UHGV-0069516_51	UniRef90_R7GTR4	169.0	0	Addiction module antitoxin RelB/DinJ family	N/A
eggNOG-mapper	UHGV-0069516_51	718252.FP2_06500	131.0	3.95e-39	Addiction module antitoxin, RelB DinJ family	N/A
Pfam	UHGV-0069516_51	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-0069516_51	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-0069516_51	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0069516_51	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A