UHGV-0070065 (vOTU-007590)

Viral Genome: UHGV-0070065

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0070065
vOTU ID	vOTU-007590
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_126748
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.94
Jumbo phage	No

Genome content
Genome length (bp)	51,345
GC content	45.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	89%
Average CDS length (bps)	628.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0070065_3	UniRef90_R6WL32	127.0	4.52e-37	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0070065_3	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
PHROG	UHGV-0070065_6	phrog_16490	90.0	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0070065_6	445972.ANACOL_01880	82.4	4.68e-16	N/A	N/A
structural_annotation	UHGV-0070065_7	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0070065_8	1378168.N510_03079	57.0	0.000000137	N/A	N/A
KOfam	UHGV-0070065_9	K14059	126.9	2.9e-37	int; integrase	N/A
PHROG	UHGV-0070065_9	phrog_1	140.9	1.29998e-41	integrase	integration and excision
UniRef90	UHGV-0070065_9	UniRef90_R6X1Y3	681.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0070065_9	1123250.KB908381_gene1631	327.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0070065_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0070065_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0070065_9	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0070065_11	K18830	62.0	1.5e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0070065_11	phrog_8	48.4	0.00000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0070065_11	UniRef90_R6X1Y8	218.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0070065_11	1151292.QEW_0725	93.6	4.92e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0070065_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0070065_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0070065_11	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_13	phrog_6058	77.5	1.1e-22	N/A	unknown function
UniRef90	UHGV-0070065_13	UniRef90_A0A0U9H7T0	58.9	0.000000000566	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0070065_13	1280689.AUJC01000011_gene1497	68.2	0.000000000000024	N/A	N/A
structural_annotation	UHGV-0070065_13	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0070065_14	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_15	phrog_14367	52.9	0.0000000000000026	N/A	unknown function
UniRef90	UHGV-0070065_15	UniRef90_R6WTN1	170.0	0	Peptidoglycan-binding LysM	N/A
Pfam	UHGV-0070065_15	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0070065_15	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0070065_15	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_17	phrog_434	328.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0070065_17	UniRef90_R6WGP6	615.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0070065_17	706434.HMPREF9429_00551	362.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0070065_17	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0070065_17	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0070065_17	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0070065_17	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0070065_18	UniRef90_R6WLK2	129.0	2.04e-37	Conserved domain protein	N/A
Pfam	UHGV-0070065_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0070065_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0070065_18	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0070065_19	K07455	203.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0070065_19	phrog_148	211.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0070065_19	UniRef90_R6XVK6	353.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0070065_19	525257.HMPREF0204_11404	204.0	0	RecT family	N/A
Pfam	UHGV-0070065_19	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0070065_19	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0070065_19	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0070065_19	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_21	phrog_5968	151.4	4.2039e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0070065_21	UniRef90_R6WTP4	196.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0070065_21	1033737.CAEV01000029_gene310	126.0	1.11e-31	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0070065_21	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0070065_21	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0070065_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0070065_21	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0070065_24	K00558	258.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0070065_24	phrog_116	297.6	0	DNA methyltransferase	other
UniRef90	UHGV-0070065_24	UniRef90_A0A1Q6RAH0	769.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0070065_24	203119.Cthe_1728	395.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0070065_24	MTase_II_00058	213.5	0	Type II methyltransferase	RM
Pfam	UHGV-0070065_24	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0070065_24	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0070065_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0070065_24	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_25	phrog_12728	153.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0070065_25	742765.HMPREF9457_02125	70.9	0.0000000000000307	N/A	N/A
PHROG	UHGV-0070065_27	phrog_10714	44.3	0.0000000000028	N/A	unknown function
structural_annotation	UHGV-0070065_27	PF21173	N/A	N/A	N/A	N/A
KOfam	UHGV-0070065_31	K01160	60.7	4.3e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0070065_31	phrog_140	132.7	2e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0070065_31	UniRef90_A0A316S9J1	146.0	2.14959e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0070065_31	743719.PaelaDRAFT_5642	126.0	2.2e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0070065_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0070065_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0070065_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0070065_32	K03111	55.4	0.0000000000000018	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0070065_32	phrog_44	60.0	7.4e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0070065_32	UniRef90_A0A1Q6RQK6	271.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0070065_32	904314.SEVCU012_1220	50.1	0.00000725	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0070065_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0070065_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0070065_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0070065_32	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_37	phrog_35696	54.8	0.0000000000000022	N/A	unknown function
PHROG	UHGV-0070065_38	phrog_15863	283.1	0	N/A	unknown function
UniRef90	UHGV-0070065_38	UniRef90_R6WLL6	592.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-0070065_38	693746.OBV_01780	127.0	2.79e-33	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0070065_38	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0070065_40	PF13983	N/A	N/A	N/A	N/A
UniRef90	UHGV-0070065_41	UniRef90_UPI00103300F2	74.3	9.88e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0070065_41	1050201.KB913034_gene791	54.3	0.0000000162	N/A	N/A
structural_annotation	UHGV-0070065_41	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0070065_44	K06909	85.1	1e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0070065_44	phrog_2	159.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0070065_44	UniRef90_UPI001D00EC11	407.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0070065_44	568816.Acin_1836	420.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0070065_44	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0070065_44	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0070065_44	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_46	phrog_332	432.8	0	head-tail adaptor	connector
UniRef90	UHGV-0070065_46	UniRef90_UPI001F3F9DD9	547.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0070065_46	568816.Acin_1834	601.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0070065_46	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0070065_46	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_47	phrog_528	105.3	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0070065_47	1401067.HMPREF0872_06805	93.2	6.81e-23	N/A	N/A
PHROG	UHGV-0070065_48	phrog_458	150.8	1.12104e-44	protease	other
eggNOG-mapper	UHGV-0070065_48	568816.Acin_1832	97.8	2.6e-22	N/A	N/A
PHROG	UHGV-0070065_49	phrog_212	203.7	0	major head protein	head and packaging
UniRef90	UHGV-0070065_49	UniRef90_A0A6J5KPX9	212.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0070065_49	568816.Acin_1831	350.0	0	N/A	N/A
Pfam	UHGV-0070065_49	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0070065_49	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_50	phrog_427	65.5	8.5e-19	N/A	unknown function
structural_annotation	UHGV-0070065_50	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_51	phrog_394	156.4	0	tail protein	tail
UniRef90	UHGV-0070065_51	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0070065_51	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0070065_51	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_52	phrog_376	606.2	0	tail protein	tail
UniRef90	UHGV-0070065_52	UniRef90_A0A0U1KV93	363.0	0	N/A	N/A
eggNOG-mapper	UHGV-0070065_52	568816.Acin_1828	675.0	0	N/A	N/A
Pfam	UHGV-0070065_52	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0070065_52	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_53	phrog_308	106.5	2.2e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0070065_53	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_54	phrog_418	131.3	2.2e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0070065_54	568816.Acin_1826	105.0	3.85e-25	N/A	N/A
structural_annotation	UHGV-0070065_54	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_55	phrog_10475	40.5	0.000000000017	endolysin	lysis
UniRef90	UHGV-0070065_55	UniRef90_A0A1Q6RQM5	1359.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0070065_55	1123288.SOV_2c10740	147.0	3.14e-34	N/A	N/A
structural_annotation	UHGV-0070065_55	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_56	phrog_9880	519.5	0	N/A	unknown function
UniRef90	UHGV-0070065_56	UniRef90_A0A1Q6RQR6	4566.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0070065_56	1123288.SOV_1c10750	190.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0070065_56	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0070065_58	phrog_13893	53.2	0.0000000000000032	tail protein	tail
eggNOG-mapper	UHGV-0070065_58	1115515.EV102420_06_00490	67.0	0.0000000103	N/A	N/A
structural_annotation	UHGV-0070065_58	PF03906	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0070065_59	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_60	phrog_1141	63.1	4.4e-18	tail fiber protein	tail
UniRef90	UHGV-0070065_60	UniRef90_A0A1Q6R2G9	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0070065_60	1286631.X805_38770	54.3	0.00000127	N/A	N/A
Pfam	UHGV-0070065_60	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0070065_60	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_61	phrog_4105	77.1	2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0070065_61	1120998.AUFC01000030_gene2251	76.6	1.2e-16	N/A	N/A
PHROG	UHGV-0070065_63	phrog_918	96.5	1.4e-28	N/A	unknown function
UniRef90	UHGV-0070065_63	UniRef90_UPI000EC62F11	147.0	3.08286e-44	N/A	N/A
eggNOG-mapper	UHGV-0070065_63	537007.BLAHAN_05515	137.0	2.51996e-41	N/A	N/A
Pfam	UHGV-0070065_63	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0070065_63	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0070065_64	1392502.JNIO01000008_gene1280	229.0	0	N/A	N/A
structural_annotation	UHGV-0070065_64	PF21277	N/A	N/A	N/A	N/A
UniRef90	UHGV-0070065_67	UniRef90_A0A316S6W0	99.0	1.46e-25	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0070065_67	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0070065_67	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0070065_67	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0070065_68	phrog_21718	47.6	0.0000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0070065_69	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-0070065_70	phrog_16490	89.0	2.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0070065_70	445972.ANACOL_01880	82.8	3.37e-16	N/A	N/A
structural_annotation	UHGV-0070065_71	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0070065_72	1378168.N510_03079	57.0	0.000000137	N/A	N/A
eggNOG-mapper	UHGV-0070065_73	626939.HMPREF9443_00786	179.0	0	glutamate:sodium symporter activity	N/A
COG	UHGV-0070065_73	COG0786	N/A	N/A	Na+/glutamate symporter	N/A